ID AY082891; SV 1; linear; genomic RNA; STD; VRL; 7453 BP. XX AC AY082891; XX DT 02-JUL-2002 (Rel. 72, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Nebraska virus strain NB, complete genome. XX KW . XX OS Nebraska virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Caliciviridae; Nebovirus; Newbury 1 virus. XX RN [1] RP 1-7453 RX DOI; 10.1128/JVI.76.20.10089-10098.2002. RX PUBMED; 12239283. RA Smiley J.R., Chang K.O., Hayes J., Vinje J., Saif L.J.; RT "Characterization of an enteropathogenic bovine calicivirus representing a RT potentially new calicivirus genus"; RL J. Virol. 76(20):10089-10098(2002). XX RN [2] RP 1-7453 RA Smiley J.R., Saif L.J.; RT ; RL Submitted (07-MAR-2002) to the INSDC. RL Food Animal Health, The Ohio State University-Ohio Agricultural Research RL and Development Center, 1680 Madison Ave., Wooster, OH 44691, USA XX DR MD5; 1f93fdbdd5204d0ca448866d69c7c1ed. DR EuropePMC; PMC1317165; 16333083. DR EuropePMC; PMC136553; 12239283. DR EuropePMC; PMC2395209; 18385231. DR EuropePMC; PMC2815582; 19940055. DR EuropePMC; PMC3358183; 21749786. DR EuropePMC; PMC4143647; 24662519. DR EuropePMC; PMC4609679; 26292294. DR EuropePMC; PMC4928471; 27375966. DR EuropePMC; PMC6200295; 30364905. XX FH Key Location/Qualifiers FH FT source 1..7453 FT /organism="Nebraska virus" FT /strain="NB" FT /mol_type="genomic RNA" FT /db_xref="taxon:2847999" FT 5'UTR 1..74 FT CDS 75..6707 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1; contains helicase/ATPase, VPg, 3C-protease, FT 3D-RdRp, and VP1 major capsid protein" FT /db_xref="GOA:Q8JN60" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q8JN60" FT /protein_id="AAL99277.1" FT /translation="MAPVVSRDQCKPKTPKPHRPAPPHRCTTRCPEDCGWYVGRCSCPN FT VCQREGWDDFFVADKVKPPSYVASKTSVADVVDWLLEEDPATDGPSEFDLTQFFQAYTD FT KSHQIHRDYAPDQLAQALDMAYILSVDPPDIKLPEYEATRFTHDTSYKGKLPKWLRVYG FT IKSRELAKKAVTNIRGGAHWAKGLFKQMWDSLPGWSEVEAYFKAFFAGIITGVEDALSK FT SPSSVWTSLKLTPLLYIWRNINECSDIAVILGAFWATLELYNIPSKVYDLVSTALGPMV FT QELARKVINVVKGDGSGPKQEGGRPSFSIPGVLLATFLSAIILGSMPSDGLIKKILRGC FT ATAAGLVGGFNAVKSIITTVQGASACKDVKKLASQLMCVTTMAATVSTRGERQVLASML FT NDLNESVRERLVDPAYASLVPQLSAMSNKIVELSTMNASALSAARKRTPAKIIVLCGPP FT GHGKSVAAHKLAKMLNPNEPSIWNPFSDHHDEYTAEEVMVIDETPAEPGQWIEDLIAMG FT SNSPFVPNYDRVENKTRCFDSKYVIITTNHNPLINPTHTRAAALARRLTLVYVNSPDVA FT DFLRQHPGVPPPATLFKADCSHLHFDIHPYNSIGTTAIVGHNGTTPVPRAKRVSLEGLC FT KHVKEMPDREGPPDGVPERMVLVAPDKGTARFVEAVINTYHNSGLVAQPAAWDTTPQPY FT QLAVTWQGSNSTVTGQRWDCNPQTPFVAPHFTRNMFKRVLGTEVPEYHLLAYACRITSS FT SLGDKSLPVPNPTVVINDPSPTRLALALMRHLKNPIASGLRVVWDLFRGCATGPKRLFT FT WALSQEWNPMPVTTAFTFPAGTVILHTAGGVRVVVLPPGPQFGLTEVARLADHSGQDDP FT VVPDMFGATWTELLWRLLKVIGTFLANYGVAIAGLTLSIAAFKTANKSAKNDRQGWLSG FT SGVALSDEEYDEWMKYSKKKGKKINADEFLQLRHRAAMGNDDDDARDYRSFYTAYQLGR FT EGNNCDDIPLHPAVGPTTGGGYYVHIGNGVGVTLKHVASGEDVIKELGNDLVKIRTKHH FT KVGDPAMVVGDGMPVKFVTGHLVVDTRSESVVFDQTRLNVIRVKVPGLETRRGYCGLPY FT VNSAGQVVGLHQGSYGVGDKVITPITPEPTAPPDTIMWRGLECARSDIVTHLPHGTKYS FT VSPGMKEEATKCSHQPAPLGRNDPRCGQTQVAMVVKALSPYTGSPAVEKLDGCLVAAIS FT EVRTAIQSLTPKGGFRPLTFAAAWQSLDLSTSAGALAPGKTKRDLCDPDTGMPTGKYKE FT ELLRAWSRAGTGTALDHTYIVALKDELRPVEKVAEGKRRLIWGADARVALIASAALSPI FT ANALKTVTNLLPVQVGVDPSSASCVSAWVNRLNRHDHCLELDYSKWDSTMSPVLINIAI FT DILCNTCASDGLRVAVCQTLKTRPTALVEGVAVPTKSGLPSGMPFTSQINSIVHWILWS FT ATVRKCSLPLNIGSVNELAPFLTYGDDGLYTIPSHLTKSIDEIVSTLKGYGLSPTAPDK FT GMNIEIKKTSFTYMSGPVFLKRRIVLTPGGHRALLDLTSLARQPVWVNGPRRSVWDHEA FT QPIEIDSEVRTIQLQNVLIESAWHQPQDFNQVAALVYKSAEASGITIPRYSLEEARAIY FT DGRFYGIQHVSMPCNSDLIREGNMSDNKSIPEQQHESSRAMDAGATGAAAAAPAPPVAA FT APASGLVGALVAEPQSGPSTEQWRTAYTLFGTVSWNANAGPGTILTVGRLGPGMNPYTQ FT HIAAMYGGWAGGMDIRITIAGSGFIGGTLAVAAIPPGVDPESVNVLRMPHVLIDARGGV FT PLEVTLEDIRTSLYHPMGDANTASLVIAVMTGLINPLGTDTLSVTVQLETRPGRDWVFF FT SLLPPTAGVASADPSQLLTRVALATSPEVRFGTGVLGILGLPSNPSVNRVYDVQSRTRG FT WSFPIPSSSVFMGDARNVEHTRRVMVQSSAPNNPLSDVFPDGFPDFIPQSDTEPDGGAV FT IAGQVLPHPGDNDNFWRLTPVVRGNTTAAINTIPERFNQVYFINLADEEAVSAATEELR FT FNGIQGIFGQRTTARAVQVMQGYVPRAEHIIRPAGFAGVGPQGPNVPIGFAGTMPNFNA FT TASGADDLVPVWGPTLVHTASLLAGTTYELAENSMYVFSVSTSTSTFELGMLANGTWLG FT PAQLAGTGITWTEVLSVTYMGMRFAYNPLSGQGIGGESRRL" FT CDS 6709..7386 FT /codon_start=1 FT /product="VP2 minor capsid protein" FT /note="ORF2; small basic protein" FT /db_xref="GOA:Q8JN59" FT /db_xref="UniProtKB/Swiss-Prot:Q8JN59" FT /protein_id="AAL99278.1" FT /translation="MASAATAGLTLLSGGAGIAADIASIVTEQQRLALQKEQIRNNYEL FT GKQTLSLQQQAMENSRDRIRLSAAQIKELGLDPKSELSMIMGLTAGAQPSISAPISSEQ FT LFLNSSNLARSVRWDARNFGEAINTFAGLRAKHQANPSRPDMMLGSDNPNWGARVTGDA FT LSVSGLSVRSNHFGSGSSSLGSLSSVRTNPFSSVSSGSVGGISLRTVGSRPSIRSVFST FT TSV" FT 3'UTR 7387..7453 XX SQ Sequence 7453 BP; 1611 A; 2197 C; 2018 G; 1627 T; 0 other; gtgatttaat tatagagaga tagtgacttt cacttttctt tctttgcatt tcgctggact 60 caaactgttc cataatggct ccagttgttt ccagagatca atgtaaacct aaaacaccaa 120 agccccaccg accagcccct ccccacaggt gcactaccag gtgccctgag gattgtgggt 180 ggtacgtggg tcgctgctcc tgccccaacg tctgccaacg cgagggttgg gacgacttct 240 tcgtagctga caaggtgaag cctcctagct acgtcgcctc aaagacctcg gtcgcagatg 300 ttgtcgactg gctacttgaa gaagaccctg ctacggacgg cccctcggaa tttgacctca 360 cgcaattttt ccaggcttac acggacaagt cccaccagat ccaccgtgac tatgccccgg 420 accagcttgc tcaggccctt gacatggctt acatactatc ggtggacccc ccggacatca 480 agctcccaga gtatgaggca actaggttca cccatgacac ctcctacaag ggcaaactgc 540 ctaagtggct gcgtgtgtat ggcatcaagt cccgagagct agcgaagaag gctgtaacca 600 acattcgggg tggagcccat tgggccaagg ggctgttcaa gcaaatgtgg gactcgttgc 660 ctggttggag tgaggtggag gcgtacttca aagctttctt cgctggcatc atcaccggtg 720 ttgaggacgc gctgtcgaag tctccgtcat cggtgtggac ctcactcaag ctcacgccgt 780 tgctatacat atggcgcaac atcaacgagt gctctgatat tgctgtgata ctaggagcct 840 tctgggcgac actggaactt tacaacatcc catccaaagt gtacgacctg gtgtcaactg 900 cacttggccc catggttcaa gagctcgccc gcaaggtgat taatgtggtc aagggcgacg 960 gcagcggccc taagcaggag gggggccgcc cgagtttctc catccctggt gtgctcctgg 1020 ccaccttcct gtctgcaatc atactggggt caatgccctc agatggcctc attaagaaga 1080 tcttgcgcgg gtgcgccacg gctgcgggct tggttggggg cttcaatgcc gtgaagagta 1140 taataaccac agtgcagggc gccagcgctt gcaaggacgt taagaaactt gccagccagc 1200 taatgtgtgt tacaacaatg gctgccacag tttccacacg tggcgaacgc caagtgttag 1260 ctagcatgct caatgaccta aatgagagtg tgcgcgagag gttggtggac ccagcctacg 1320 catcactggt gccccagcta tccgccatgt ccaacaagat cgtggagctc tccacaatga 1380 atgcctcagc actgtcggcg gcccgcaagc gcacccccgc caaaatcata gtgttgtgtg 1440 gaccccccgg tcacggcaaa tctgtcgcgg cccataagct tgctaagatg ctgaatccaa 1500 atgaaccgtc catttggaat ccattttcag accaccatga tgagtacacc gcagaggaag 1560 ttatggtcat cgacgagacg cccgcagaac cagggcagtg gattgaggat ctcatagcca 1620 tggggtccaa cagcccattt gtacccaatt atgacagggt ggagaacaag accagatgtt 1680 ttgattccaa atatgtcatc atcacaacca accataaccc acttattaac ccaacccaca 1740 ctcgtgccgc cgcactggct cgcaggctca cgttggttta cgtgaattcc cctgacgttg 1800 ccgacttcct gcgccagcat cctggagtgc caccacctgc aacgctgttt aaggctgatt 1860 gttcccatct gcattttgac atccacccgt ataattcaat tggcacaacg gccatcgtcg 1920 ggcacaatgg aacaacaccc gtgccacgag ccaagcgcgt atccttggag gggttgtgca 1980 agcatgtgaa agagatgcct gaccgggaag gccctccaga tggggtgcct gaaaggatgg 2040 tgctggtagc ccctgacaaa ggtaccgcac ggtttgtcga ggccgtgatt aacacttacc 2100 acaactccgg cctggttgcc caacccgcag cgtgggatac aaccccgcaa ccgtaccagc 2160 ttgccgtgac ttggcagggt tcaaactcga ccgtaacggg ccagcgctgg gactgtaacc 2220 cgcaaacgcc cttcgtggca ccccacttca cgcggaatat gttcaagcgt gtccttggaa 2280 cagaagtccc tgagtaccac cttctggcct acgcgtgccg gatcacttcc agctcgcttg 2340 gtgacaagag cctgccggtc cctaatccca ccgttgttat caatgaccct tcacccaccc 2400 gccttgccct tgccctcatg cggcacctca aaaatccaat tgcctcaggc ctgcgcgtcg 2460 tttgggacct gttccgcggc tgtgccactg gccctaagcg gctgtttacg tgggcgcttt 2520 cccaggagtg gaaccccatg cccgtcacca cagccttcac ctttccagcc ggcactgtca 2580 tcttgcacac ggctggtggg gtccgtgtgg ttgtccttcc acctggcccc cagtttgggt 2640 tgactgaagt ggcgcgcctt gcggatcaca gcggacagga tgaccccgtc gtgccagaca 2700 tgtttggggc gacgtggacg gaactcctgt ggcggcttct caaggttatt ggcaccttcc 2760 tagccaacta tggggtggcc atagccgggt tgactctttc catagctgca ttcaagacag 2820 ccaacaagtc cgctaagaat gaccgccagg gctggctatc tggcagcggg gtcgcgctgt 2880 ctgatgagga gtacgacgag tggatgaaat attccaagaa gaagggcaag aagatcaatg 2940 cagatgagtt cctccagctg cgacacaggg ccgcgatggg caatgatgat gatgacgccc 3000 gtgattaccg ctcgttttac acagcttacc aacttgggcg cgagggcaac aactgtgatg 3060 acatcccact gcacccggcg gtcgggccaa ccactggcgg cgggtattat gtccacattg 3120 gcaacggcgt tggggtcaca ctcaagcacg tcgcctcagg tgaagatgtc atcaaagaac 3180 ttggcaatga cctagtgaag attaggacca agcaccataa ggtgggcgat cccgccatgg 3240 ttgttggcga tggcatgcca gtgaagtttg taacaggcca ccttgttgtt gacactcgca 3300 gtgagtcagt ggtgtttgac caaactcggt tgaatgtgat aagggtcaag gttcctgggc 3360 ttgagacgcg gcgcgggtac tgcggcctcc catatgtcaa cagcgccggg caagtggttg 3420 ggctccacca gggctcatac ggcgtgggtg acaaggtgat cacgcccatc acccctgagc 3480 caacggcccc gcccgatacc atcatgtggc gtgggcttga gtgcgcccgc tccgacattg 3540 taacgcacct gccccacggc accaagtact cggtgtcccc gggcatgaag gaggaggcga 3600 ccaagtgctc ccaccaacca gcgcctctcg ggcgcaatga cccaaggtgc ggccagacgc 3660 aggtcgcgat ggtagtcaag gccctttccc cgtacacggg cagccctgct gttgagaaat 3720 tggacgggtg tctagttgcg gccatctcgg aggttcgcac agctatacaa tcattgacac 3780 ccaagggggg cttccgaccg ctcaccttcg ccgcggcatg gcaaagcttg gatctgtcaa 3840 cctcggccgg tgccctcgct cctgggaaga ccaaaagaga tctgtgtgat cccgacacgg 3900 gaatgccaac cgggaaatat aaagaagagc tgctaagagc atggtcgcgg gcgggcacag 3960 ggacggcctt ggaccatacc tacatcgtgg cactgaagga tgagctacgc ccagttgaaa 4020 aagttgctga aggcaagcgc aggctcattt ggggcgccga cgcgcgcgtc gcgctaattg 4080 catctgcggc cctctcaccc attgcaaatg ccctaaaaac tgttacaaac ctcctcccag 4140 tgcaggtggg tgtcgaccca tccagcgcca gctgtgtgtc cgcctgggtc aatcggctga 4200 accgccatga ccattgcctt gagttggact attccaaatg ggactccaca atgtccccgg 4260 tgctgataaa tattgcaata gacatcctgt gcaacacttg cgccagtgac ggtttgcgag 4320 ttgcggtgtg ccaaacactc aagactcgtc ccacagcttt ggtcgagggc gttgcagtac 4380 ccacaaagtc tggcctccca tctggaatgc ccttcactag tcagatcaat tcaattgtcc 4440 attggatact gtggtccgca accgtgcgca agtgctccct tcccttgaac attgggtctg 4500 ttaatgagct tgccccattc ctgacctatg gggacgatgg gctttacaca atcccctccc 4560 atctcaccaa aagcattgat gaaattgtgt caacattgaa gggctatggg ttgtccccaa 4620 cagctccaga caaagggatg aacattgaaa ttaagaaaac ctccttcacc tacatgtcag 4680 gccccgtgtt cttgaagcgc cgcatcgtcc tcacgcctgg cgggcatcgc gccctgcttg 4740 atctaacatc gcttgcgcga cagcccgtgt gggtgaatgg ccctcggcgc tccgtgtggg 4800 atcacgaagc tcagccgatc gagattgatt ctgaggtcag aactatccaa cttcaaaatg 4860 tcttgattga gtcggcgtgg catcagcccc aagatttcaa ccaggttgca gccctagttt 4920 acaagtctgc tgaggcttct gggatcacca tccccagata ttctctagaa gaagcccgtg 4980 ctatttacga cgggcgcttt tatggcatcc aacatgtgag tatgccatgc aatagtgatt 5040 taattagaga aggaaacatg agtgacaaca aaagtatccc agagcaacag catgagtcat 5100 cgcgtgcgat ggacgctggc gccaccggcg ccgccgcagc tgcacctgcc ccacccgttg 5160 cggccgcacc agctagtggc ttggtgggcg cgcttgttgc tgaaccccag tcaggcccga 5220 gcactgaaca gtggcggact gcctacaccc ttttcggcac tgtctcctgg aacgctaatg 5280 ccggccccgg gacgatcctc acagtggggc ggctcgggcc gggcatgaac ccctacaccc 5340 agcacatcgc tgcaatgtac gggggttggg ccggcggcat ggacattagg atcaccatcg 5400 ctgggtctgg gttcatcggc ggcacacttg ccgtcgccgc cattccacca ggcgtggacc 5460 cggagagtgt caacgtgctg cgcatgcccc acgtgctcat tgacgctcgc ggcggcgtcc 5520 cacttgaggt gacgttagag gacatccgaa catccctcta ccacccgatg ggggatgcca 5580 acaccgcgtc actggtgatc gccgtcatga ctgggcttat caaccccctg ggcactgaca 5640 ccctgtcggt cacagtgcag ctcgagacca ggcccggccg cgactgggtc ttcttttcac 5700 tgctgccccc cactgcaggc gtggcctcgg ccgacccgtc acaactcctc accagggtgg 5760 ccctcgccac ctcgccagag gtgcgcttcg gcacgggagt gcttggcatc cttgggttac 5820 catcaaaccc atctgtcaac cgagtctatg acgtgcagtc ccgcacacgc gggtggagct 5880 tccccatccc tagctctagc gtgttcatgg gggacgccag gaatgtcgaa cacacccggc 5940 gggtcatggt ccaatcatca gccccaaaca accccctgtc agatgttttc cccgatggct 6000 ttccagactt cataccccaa tcagacactg aaccggatgg cggtgccgtc attgccggtc 6060 aggtgctccc acatccaggt gataatgaca atttctggag actcaccccg gtcgtccgcg 6120 gtaataccac ggcggccatc aacaccatcc cagaacggtt caaccaagtg tatttcatca 6180 acctcgccga tgaggaagcc gtgagtgcgg cgactgagga gctgaggttt aatggtatcc 6240 agggcatatt tggccagcgc accaccgcac gtgctgtgca agtcatgcaa gggtacgtcc 6300 cgcgggctga acacatcatc cggcctgctg ggtttgccgg cgtgggccca caagggccca 6360 acgtgcccat tggctttgcc gggaccatgc caaatttcaa tgcaacggcc agcggggcag 6420 acgacctggt gcctgtctgg ggacccaccc tggtgcacac tgcctcccta ctggcgggca 6480 ccacgtacga gcttgccgag aattcaatgt acgtgttctc cgtgagcacg tccacttcca 6540 cctttgaact cggcatgctt gccaatggta cctggcttgg ccctgcacag ctcgctggca 6600 cgggcatcac ctggactgaa gttctttctg tcacctacat gggaatgcgc tttgcctaca 6660 accctttgag tgggcagggc ataggtggtg aatctaggag attgtaatat ggctagtgct 6720 gctacggctg ggttgacatt gttgtctggc ggtgcaggca ttgccgccga cattgcatca 6780 atagtcactg agcagcaaag attggcactg caaaaggagc aaattcggaa taattatgag 6840 cttggcaagc aaaccttgtc cctgcaacaa caagccatgg aaaattccag ggataggatt 6900 aggttgtctg ccgcccaaat taaagaatta ggccttgacc caaagtctga gttgagtatg 6960 atcatggggt tgacagctgg tgcccaaccc tccattagtg cccccatctc cagtgagcag 7020 ctgtttttga attcatccaa tttggcgcgt tccgtccgtt gggatgcgcg aaattttggt 7080 gaggccatca acaccttcgc tggcctccgt gctaagcatc aggcaaatcc tagtcgcccg 7140 gacatgatgc tgggcagtga taaccccaat tggggcgctc gtgtcacagg tgatgcccta 7200 tcagtgagcg gcctgtccgt cagatccaac cactttgggt caggctcctc ctcattgggc 7260 tcactgagct ccgtgcgcac caaccccttt tcctccgtta gctcggggtc cgtgggaggc 7320 atttccctcc gcacggtggg ttcacggccg tcaatcaggt cagtgttctc gaccacgagt 7380 gtttgaaatt tgttttcctc tttaattaat caaatgcatt gtgagttttg tttttggttt 7440 tgttttaatt tgc 7453 //