ID AY070218; SV 1; linear; genomic RNA; STD; VRL; 8640 BP. XX AC AY070218; XX DT 02-JAN-2003 (Rel. 74, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus RNA-dependent RNA polymerase (L) gene, complete DE cds. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-8640 RA Eyestone E.J., Hilson P., German T.L.; RT "Association of L protein and in vitro tomato spotted wilt virus RT RNA-dependent RNA polymerase activity"; RL Unpublished. XX RN [2] RP 1-8640 RA Eyestone E.J., Hilson P., German T.L.; RT ; RL Submitted (17-DEC-2001) to the INSDC. RL URGV, INRA, 2, rue Gustave Cremieux, Evry 91057, France XX DR MD5; f19061ccfb8b005483fb89008e9f1d30. XX FH Key Location/Qualifiers FH FT source 1..8640 FT /organism="Orthotospovirus tomatomaculae" FT /isolate="Hawaii" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052585" FT CDS 1..8640 FT /codon_start=1 FT /gene="L" FT /product="RNA-dependent RNA polymerase" FT /note="L protein" FT /db_xref="GOA:Q8B546" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR015841" FT /db_xref="UniProtKB/TrEMBL:Q8B546" FT /protein_id="AAL55403.1" FT /translation="MNIQKIQKLIENGTTLLLSIEDCVGSNHDLALDLHKRNSDEIPED FT VIINNNAKNYETMRELIVKITADGEGLNKGMATVDVKKLSEMVSLFEQKYLETELARHD FT IFGELISRHLRIKPKQRSEVEIEHALREYLDELNKKSCINKLSDDEFERINKEYVATNA FT TPDNYVIYKESKNSELCLIIYDWKISVDARTETKTMEKYYKNIWKSFKDIKVNGKPFLE FT DHPVFVSIVILKPIAGMPITVTSSRVLEKFEDSPSALHGERIKHAKNAKLLNISYVGKI FT VGTTPTVVRNYYANTQKIKNEVGGILGDDFGSKDVFFSHWTSKYKERNPTEIAYSEDIE FT RIIDSLVTDEIPKEEIIHFLFGNFCFHIETMNDQHIADKFKGYQNSCINLKIEPKTDLA FT DLKDHLIQKQQIWDSLYGKHLEKIMLRIREKKKKEKEIPDITTAFNQNAAEYEEKYPNC FT FTNDLSETKNNFSMTWSPSFEKVELSSEVDYNNAIINKFRESFKSSSRIVYNSPYSSIN FT NQTNKARDITNLVRLCLTELSCDTTKMEKQELEDEMDINTGSVKVERTKKSKEWNKQGS FT CLTRNKNEFCMKETGRENKTTYFKGLAVMNIGMSSKKRILKKEEIKERISKGLEYDTSE FT RQADPNDDYSSIDMSSLTHMKKLIRHDNEDSLSWCERIKDSLFVLHNGDIREEGKITSV FT YNNYAKNPECLYIQDSVLKAELETCKKINKLCNDLAIYHYSEDMMQFSKGLMVADRYMT FT KESFKILTTANTSMMLLAFKGDGMNTGGSGVPYIALHIVDEDMSGQFNICYTKEIYSYF FT RSGSNYIYIMRPQRLNQVRLLSLFKTPSKVPVCFAQFSKKASEMEKWLKNKDIEKVNVF FT SMTMTVKQILINIVFSSVMIGTVTKLSRMGIFDFMRYAGFLPLSDYSNIKEYIRDKFDP FT DITNVADIYFVNGIKKLLFRMEDLNLSTNAKPVVVDHENDIIGGITDLNIKCPITGSTL FT LTLEDLYNNVYLAIYMMPKSLHNHVHNLTSLLNVPAEWELKFRKELGFNIFEDIYPKKA FT MFDDKDLFSINGALNVKALSDYYLGNTENVGLMRSEIENKEDFLSPCYKISTLKSSKKC FT SQSNIISTDEIIECLQNAKIQDIENWKGNNLAIIKGLMRTYNEEKGRLMEFFEDNCVNS FT LYLVEKLKEIINSGSITVGKSVTSKFIRNNHPLTVETYLKTKLYYKNNVTVLKSKKVSE FT ELYDLVKQFHNMMEIDLDSVMNLGKGTEGKKHTFLQMLEFVMSKAKNVTGSVDFLVSVF FT EKMQRTKTDREIYLMSMKVKMMLYFIEHTFKHVAQSDPSEAISISGDNKIRALSTLSLD FT TITSYNDILNKNSKKSRLAFLSADQSKWSASDLTYKYVLAIILNPILTTGEASLMIECI FT LMYVKLKKVCIPTDIFLNLRKAQGTFGQNETAIGLLTKGLTTNTYPVSMNWLQGNLNYL FT SSVYHSCAMKAYHKTLECYKDCDFQTRWIVHSDDNATSLIASGGVDKMLTDFSSSSLPE FT MLFRSIEAHFKSFCITLNPKKSYASSSEVEFISERIVNGAIIPLYCRHLANCCTESSHI FT SYFDDLMSLSIHVTMLLRKGCPNEVIPFAYGAVQVQALSIYSMLPGEVNDSIRIFNKLG FT VSLKSNEIPTNMGGWLTSPIEPLSILGPSSNDQIIYYNVIRDFLNKKSLDEVKDSVSSS FT SYLQMRFRELKEKYERGTLEEKDKKMIFLINLFEKASVSEDSDVLTIGMKFQTMLTQII FT KLPNFINENALNKMSSYKDFSKLYPNLKKNEDLYKSTKNIKIDEDAILEEDELYEKIAS FT SLEMESVHDIMIKNPETILIAPLNDRDFLLSQLFMYTSPSKRNQLSNQSTEKLALDRLL FT RSKAKTFVDISSTVKMTYEENMEKKILEMLKFDLDSYCSFKTCVNLVIKDVNFSMLIPI FT LDSAYPCESRKRDNYNFRWLQTEKWIPVVEGSPGLVVMHAVYGSNYIENLGLKNIPLTD FT DSINVLTSTFGTGLIMEDVKSLVNGKDSFETEAFSNSNECQRLVKACNYMIAAQNRLLA FT INTCFTRKSFPFYSKFNLGRGFISNTLALLSTIYSKEESYHFVSTASYKLDKTIRTVIS FT AQQDMNLEKILDTAVYISDKLQSLFPTITREDIVLILQNVCLDSKPIWQSLEDKMKKIN FT NSTASGFTVSNVILSHNSELNTIQKQIVWMWNMGLCSHRTLDFVIRYIRRSDVRYVKTE FT EQDESGNYVSGTMYKIGIMTRSCYVQLIASDQDVAVSLRTPFEILNEREYLFDTYRESI FT EKLLQKFMFDKVNIIKSKQPQIVFLEPGDACIRMTTDNKMIVKVNATPRQIRLENVKLI FT VKIKYENVNSDVWDIIESQKSLVLRLPEVGECFSDMYKTADSETETIKTIKNRLMTSLT FT FIEAFGNLSQQIKEIVDDDIREAMDEFLMNIRDTCLEGLENCKSVEEYDSYLDENGFND FT TVELFENLLRTHDNFENEYSPLFSEIVDKAKQYTRDLEGFKEILLMLKYSLINDASGFK FT SYRATGTHAVELMAKKHIEIGEFNLLGMIQLIKACETCHNNDSILNLASLRNVLSRTYA FT TFGRRIKLDHDLDLQNNLMEKSYDFKTLVLPEIKLSELSREILKENGFIISGENLKIDR FT SDEEFEGLASFNVLRLDEEEMYEGLIKEMKIKRKKRGFLFPANTLLLSELIKFLIGGIK FT GTSFDIETLLRNSFRPDIFSTDRLGRLSSSVPALKVYATVYMEYKNVNCPLNEIADSLE FT GYLKLTKSKSKEHFLSGRVKKALIQLRDEQSRTKKLEVYKDIANFLSRHPLCLSEKTLY FT GRYTYYDINDYIMQTREIILSKISELDEVVETDEDNFLLSYLRGEEDAFDEDEFDEEED FT TD" FT gene 1..8640 FT /gene="L" XX SQ Sequence 8640 BP; 3252 A; 1275 C; 1679 G; 2434 T; 0 other; atgaacatcc agaaaataca aaaattaata gaaaatggaa ccactttact gttgtctatt 60 gaggattgtg taggttctaa ccacgatcta gctttggatt tacataagag aaatagtgat 120 gagatcccag aagatgtgat tataaataat aatgcaaaaa attatgagac aatgagagag 180 ttaattgtta aaatcactgc tgatggtgaa gggctaaaca aagggatggc aactgtggat 240 gtcaaaaagc taagtgagat ggtctctctg tttgagcaaa aatacctaga aacagagtta 300 gcaaggcatg acatttttgg agagctgata tccaggcacc tgagaataaa gcccaaacaa 360 agaagtgaag tggagataga gcatgcacta agagaatatc tggatgaact caacaaaaag 420 tcctgcatta ataagctctc tgacgatgag tttgagagaa taaataaaga atatgtagca 480 actaatgcca cccctgataa ctatgtgata tacaaagaat caaaaaatag tgagctttgc 540 ttaatcattt atgattggaa aatatctgtc gatgccagga ctgaaaccaa aacgatggaa 600 aaatactaca aaaatatctg gaaatctttc aaagatataa aagtgaatgg aaagccattc 660 ctggaagatc atcctgtttt cgtttctata gttatattga aacctattgc tgggatgcca 720 atcactgtta ctagcagcag ggttttggag aaatttgaag attctccatc agcattgcat 780 ggagaaagaa taaagcatgc taaaaatgcc aaattgctaa atatttctta tgttgggaaa 840 atagttggaa ccacacccac agtggtgaga aactattatg caaacactca aaaaatcaaa 900 aatgaagtcg gaggaatctt aggtgatgat tttggatcta aagatgtatt ttttagtcac 960 tggaccagca agtacaaaga gagaaatcct actgaaatag cctattctga agatattgaa 1020 agaataattg attcacttgt cacagatgaa atccctaaag aggaaataat acattttttg 1080 tttggaaatt tctgtttcca tattgaaaca atgaatgacc agcatattgc tgacaaattt 1140 aaagggtacc aaaactcttg tatcaattta aaaatagagc caaaaactga tttagctgat 1200 ttgaaagacc acttaatcca aaaacagcaa atatgggatt ccttgtatgg gaaacacctt 1260 gagaagatta tgcttagaat tagagaaaaa aagaaaaaag aaaaagaaat acctgacata 1320 accactgctt ttaaccagaa tgctgctgaa tatgaagaaa agtaccctaa ctgttttaca 1380 aatgatcttt ctgaaaccaa aaataacttt tccatgactt ggtccccaag ttttgaaaaa 1440 gttgaattga gctcagaggt agattacaac aacgcaatta taaacaagtt tcgggaaagc 1500 ttcaaaagtt catcaaggat tgtttataat agcccatata gtagcataaa taaccaaaca 1560 aataaagcaa gagatataac aaacttggtt agactgtgct taacagagct aagctgtgat 1620 acaacaaaaa tggaaaagca ggagcttgag gatgaaatgg atataaacac tggaagtgtt 1680 aaagttgaga gaacaaaaaa atctaaagaa tggaataagc agggttcgtg tttaaccagg 1740 aacaaaaacg aattttgcat gaaagagaca ggcagggaga acaaaactac ctatttcaaa 1800 ggcttagcag taatgaatat aggaatgagt tctaagaaaa gaattctaaa aaaagaagaa 1860 ataaaagaaa ggatttctaa aggcctggaa tatgacacct ctgaaaggca ggctgaccca 1920 aatgatgatt attcaagtat agacatgtct tctctgactc atatgaaaaa actaatcagg 1980 cacgataatg aggacagttt gagctggtgt gaaagaatca aggattcttt gtttgtcctt 2040 cataatggtg atataagaga ggaaggcaag atcacatctg tttacaataa ttatgctaaa 2100 aatcctgaat gcttgtacat tcaagattca gtactgaagg ctgaattaga gacttgcaaa 2160 aagataaaca aattatgcaa tgacttagcc atttaccatt actctgaaga catgatgcaa 2220 ttctccaaag gtttaatggt ggctgacagg tatatgacta aagaaagttt caagatacta 2280 acaacggcaa atacaagcat gatgctattg gcattcaaag gagatggaat gaacactggt 2340 ggatcaggag taccttacat agcattgcat atagtggatg aagacatgtc aggtcaattt 2400 aacatatgtt atactaaaga aatttatagc tatttccgaa gtggtagtaa ttacatttat 2460 ataatgagac cacagagact caaccaggtg aggctgctga gccttttcaa aacgcctagt 2520 aaagttcctg tgtgttttgc acaattttca aagaaagcta gtgaaatgga aaaatggctg 2580 aaaaacaaag atatagaaaa ggtaaatgtc ttttctatga caatgactgt aaaacagata 2640 ttaataaata ttgtgttttc atctgtcatg ataggaactg tgacaaagct cagcaggatg 2700 ggaatttttg atttcatgcg atatgcaggg tttttgccac tgtccgatta ttctaatata 2760 aaagaataca ttagagacaa atttgatcct gatataacta atgtggcaga tatctatttt 2820 gttaatggaa tcaaaaaact actgttcaga atggaagatc tcaatttaag cacaaatgcc 2880 aagcctgttg ttgtggacca cgaaaatgat attataggag ggataacaga cctgaatata 2940 aaatgcccaa taacaggatc aactctgctg acacttgaag atctgtacaa taatgtttat 3000 ttggctattt atatgatgcc taaatcattg cacaatcatg ttcacaatct aacaagcttg 3060 ttaaatgtcc ctgctgagtg ggaactaaag tttagaaaag agttaggttt caacatattt 3120 gaagacatat accctaagaa agcgatgttt gatgacaaag acctgttctc tataaatgga 3180 gctttgaatg tgaaagcatt atctgattac tatctaggaa atacagaaaa tgttggtttg 3240 atgagatcag aaatagaaaa taaagaagat ttcctgagcc cttgttataa aatatctact 3300 ttaaaatctt caaaaaaatg ctcacaatca aacattataa gtaccgatga aataatagag 3360 tgtcttcaga atgcaaagat ccaagatata gaaaattgga aaggaaataa cctggccatt 3420 ataaaagggc ttatgagaac ctacaatgag gagaaagggc gattgatgga attttttgag 3480 gataattgtg tcaattcatt atatcttgta gaaaagctta aagagataat taatagtgga 3540 tcaataactg tagggaaatc tgtaacatct aaattcatac gaaataatca tcctttaaca 3600 gtagaaacat atctcaaaac aaaactatat tataagaata atgtgacagt tttaaagtct 3660 aaaaaagtgt cagaggagct ttatgacctt gtaaaacagt ttcacaacat gatggagata 3720 gacctagatt ctgttatgaa ccttgggaaa ggcacagaag ggaaaaaaca cacattcttg 3780 cagatgcttg aatttgtcat gtccaaagct aaaaatgtca ccgggtctgt agatttccta 3840 gtttctgttt ttgagaaaat gcagagaacc aaaacagaca gagaaatata cttgatgagc 3900 atgaaagtga aaatgatgct ttattttata gagcacacat tcaaacatgt ggcacaaagt 3960 gatccatcgg aagccatatc tataagtgga gacaataaaa taagagcact ttctacatta 4020 tctttggaca caatcacgtc ttacaatgat attttaaaca aaaattcaaa gaagtcaaga 4080 ttggctttcc tatctgctga tcagtcgaaa tggtcggcat cagatcttac ctataaatat 4140 gttttagcta tcatattaaa cccaatttta actactggtg aagctagttt aatgatagaa 4200 tgcattttaa tgtatgttaa attgaagaaa gtttgcatac caacggatat ttttttgaat 4260 ctaaggaaag ctcaaggaac ttttgggcaa aatgaaactg ccataggact tttgactaaa 4320 gggttgacga caaacacata ccctgttagc atgaactggt tgcaaggcaa tttaaattat 4380 ctgtcttctg tttatcactc ttgtgcaatg aaagcttacc acaaaacttt agaatgttac 4440 aaagactgtg atttccaaac tagatggatt gtgcactctg atgacaatgc aacatcatta 4500 atagccagtg gaggggtcga taaaatgcta acagactttt caagctcatc tctgcctgaa 4560 atgttgttta gaagcattga agctcatttc aaaagctttt gcataacttt gaacccaaaa 4620 aagagttatg cctcttcatc agaagtagag ttcatatctg aaagaatcgt gaacggagcg 4680 attattcctc tctattgcag gcatttagca aactgttgca cagaatcttc acatataagt 4740 tattttgatg atctaatgtc actcagtata catgttacaa tgcttctgag aaaaggctgt 4800 cctaatgaag ttataccttt tgcttatggg gctgtgcagg ttcaagcatt aagcatctat 4860 tcaatgcttc ctggtgaagt gaatgatagc atcagaattt ttaacaagct tggagtaagt 4920 ttaaaatcga atgagattcc tacaaacatg gggggatggt tgacttctcc tatagagccg 4980 ttgtctatat taggcccgtc atcaaatgat caaatcatct attacaatgt gataagagat 5040 tttttgaaca aaaaaagttt agatgaagtt aaagatagtg tctcttcttc cagctatcta 5100 cagatgagat tcagagagct aaaggaaaag tatgaaagag gaactctaga agaaaaggat 5160 aaaaagatga tatttcttat caatctgttc gagaaagcat cagtgtctga agattcagac 5220 gttctaacaa ttgggatgaa attccaaacc atgttaactc agattataaa attacctaat 5280 tttataaatg agaatgcttt aaacaagatg tcaagttata aagatttttc aaaactttac 5340 cctaatttga aaaagaatga agatttatat aaaagtacta agaacataaa gatagacgag 5400 gatgctattt tagaggaaga tgaattatac gagaagattg catctagctt agaaatggaa 5460 tctgttcatg acataatgat aaaaaatccc gaaactattt tgatagcacc attgaatgat 5520 agagattttt tacttagcca gctgttcatg tacacaagcc cttctaagag gaaccagtta 5580 tcgaaccaat ccacagagaa acttgcttta gatagattgc taagatcaaa agctaaaaca 5640 tttgtagaca tttcttctac tgtgaagatg acttatgaag aaaacatgga aaagaaaatc 5700 ttagaaatgc taaaatttga tttagattca tattgttcat ttaaaacatg tgtgaatcta 5760 gtgatcaagg atgttaattt cagcatgcta attccaatat tggattctgc atacccttgt 5820 gaatctagga aaagagataa ctacaatttc aggtggttgc agactgagaa atggatacct 5880 gttgttgaag gctctccggg actagtagtg atgcatgctg tatatggatc aaattatata 5940 gaaaatttag gtctaaaaaa catcccccta acagacgata gcattaatgt tttaacaagc 6000 acgtttggaa caggtttaat catggaggat gtaaaatccc tagttaatgg caaagacagc 6060 ttcgaaacag aggctttcag caattctaat gaatgtcaaa gattggtgaa agcatgcaat 6120 tatatgatag cagcacaaaa caggctttta gcaattaaca catgctttac taggaaaagc 6180 ttccccttct attctaagtt taatctaggg agagggttta tctcaaacac gttagctctc 6240 ttatccacca tctacagtaa agaagaatca tatcattttg tttctacagc tagttataaa 6300 ttagacaaaa ctatcagaac tgtgataagt gctcagcaag atatgaactt agagaaaata 6360 ctggacactg ctgtatacat atcagataaa ttgcagtcac ttttcccaac aattacaaga 6420 gaagatatag ttttgatatt gcaaaatgtg tgccttgaca gcaaacctat atggcagagt 6480 ctagaagaca aaatgaaaaa gattaacaat tcgacagcaa gtggcttcac agtctcaaat 6540 gtgattctat cacataacag tgaattgaac acaatccaga aacaaattgt ttggatgtgg 6600 aacatgggtt tgtgttctca tagaacatta gattttgtta tcagatatat tagaagaagt 6660 gatgtgagat atgtgaaaac tgaagaacaa gacgaatcgg gaaattatgt ctctggaact 6720 atgtacaaaa tagggatcat gacaagaagc tgctatgttc aattgatagc atctgatcaa 6780 gatgtagcag tttctttgag aacaccgttt gagatattga atgagagaga gtatcttttt 6840 gacacataca gagaaagtat agagaaatta ctgcagaaat ttatgtttga taaagtgaac 6900 ataataaaat caaaacaacc acagattgtt ttcttagaac caggagatgc ctgcataaga 6960 atgaccacag acaacaaaat gattgtaaag gttaatgcca caccaaggca aataagacta 7020 gagaatgtaa aattaatcgt aaagataaaa tatgaaaacg tgaactctga tgtgtgggat 7080 attattgaaa gccaaaaatc tctagttttg aggctccctg aagtagggga atgtttctct 7140 gatatgtaca aaactgcaga ttctgaaact gaaacaataa aaaccataaa aaacaggctc 7200 atgacctctt taactttcat agaagccttt ggaaacttat cacagcagat caaagagatt 7260 gtagatgatg atatcagaga agcgatggat gaattcttaa tgaacatccg ggatacctgc 7320 ttagaaggtt tggaaaactg caaaagtgtg gaggaatatg atagctatct tgatgaaaat 7380 ggttttaatg acacagtaga actattcgaa aacttgctaa gaacacatga caactttgaa 7440 aatgagtata gtcctctgtt ttcagagatt gttgacaaag caaaacagta tactagagat 7500 ttagaaggtt tcaaagaaat actgcttatg cttaaatatt ctctgataaa tgatgcatca 7560 ggatttaaaa gctatagagc cactggaacg cacgctgttg aactaatggc aaaaaagcac 7620 atagagatag gggaattcaa cttattggga atgatccagt tgattaaagc ttgcgaaaca 7680 tgccacaaca atgactctat attaaactta gcaagtttaa ggaatgttct tagcaggaca 7740 tatgccacat ttgggaggag aataaaattg gatcatgatc tggacttgca aaacaactta 7800 atggaaaaaa gttatgattt caagacactg gttttaccag aaattaaatt atcagaacta 7860 tctagggaaa tactgaaaga aaatgggttt attatatctg gggagaacct aaaaatagat 7920 aggtctgatg aagaatttga gggtcttgct agctttaatg tgttgaggct agatgaggaa 7980 gaaatgtatg aaggtttgat caaagagatg aaaattaaaa ggaaaaagag agggttttta 8040 tttccggcga atacacttct gctaagtgag ttgataaagt tcttgattgg tggaataaag 8100 ggaaccagtt ttgatataga aacattgttg cggaacagtt ttagaccaga catattttca 8160 accgacagat tgggcagatt aagttccagt gtacctgcac tcaaagttta tgcaactgtt 8220 tatatggaat ataagaatgt caattgccct ttaaatgaaa tagctgacag cttagaaggt 8280 tatctaaaac tgacaaaaag caaatctaag gagcatttct tgtctggaag agttaagaaa 8340 gccttgatac agttaagaga tgaacaatcg cgaactaaaa aactagaggt ctataaagat 8400 atcgcaaatt tcctttctag gcacccgcta tgtttatctg aaaaaacatt atatggaaga 8460 tacacctact atgacatcaa tgattatatc atgcaaacaa gagagattat tttgagtaaa 8520 ataagtgagt tggatgaggt tgttgaaaca gatgaagaca atttcttgct tagttatcta 8580 agaggggaag aagatgcctt tgatgaagat gagtttgatg aagaagaaga cacagattaa 8640 //