ID AY055762; SV 1; linear; genomic RNA; STD; VRL; 6966 BP. XX AC AY055762; XX DT 08-OCT-2003 (Rel. 77, Created) DT 08-MAR-2006 (Rel. 87, Last updated, Version 2) XX DE Botrytis virus X, complete genome. XX KW . XX OS Botrytis virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Botrexvirus. XX RN [1] RP 1-6966 RX DOI; 10.1007/s00705-005-0621-y. RX PUBMED; 16172841. RA Howitt R.L., Beever R.E., Pearson M.N., Forster R.L.; RT "Genome characterization of a flexuous rod-shaped mycovirus, Botrytis virus RT X, reveals high amino acid identity to genes from plant 'potex-like' RT viruses"; RL Arch. Virol. 151(3):563-579(2006). XX RN [2] RP 1-6966 RA Howitt R.L., Beever R.E., Pearson M.N., Forster R.L.; RT ; RL Submitted (12-SEP-2001) to the INSDC. RL HortResearch, 120 Mt Albert Rd, Mt Albert, Auckland, New Zealand XX DR MD5; 8b8c627fae2ec7a4181af5e7a7d0c9d4. DR EuropePMC; PMC4357927; 25595766. XX FH Key Location/Qualifiers FH FT source 1..6966 FT /organism="Botrytis virus X" FT /host="Botrytis cinerea" FT /mol_type="genomic RNA" FT /db_xref="taxon:174142" FT CDS 96..4337 FT /codon_start=1 FT /product="158kDa replicase" FT /db_xref="GOA:Q6YNQ7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q6YNQ7" FT /protein_id="AAL17722.1" FT /translation="MSALRSLASDLSDPTTKAAANEIAFKHFSDGIKSTKLSFPYKVDE FT STAILLEKEGVLTNPFSTTLHTHAAEKMLENRTLNEVGKKLKVHTGPFTFIQFKTGKLG FT HVGRGHNQGDQIINYAREAKDLSRFETLDTAVVPPVHNRVALLHDTLHFLSPRQLAQLF FT HHNPNLHLLYATLVLPVEALHNLPSLNPHAYTLEYFSNGDFAYMPGGHAGSGYYHSAET FT LHWLRAGQIKLGHFSLSLNKEDSFGAHHIFTVTRQFIPPAPRYLYAETELVTLHDIFYP FT ADSNVQRPYPATLINRMELYCRSVKAVSLRDIFAKFRQVTETAQLRHMRISDVIRLANY FT FLFSASLSGTNDYPSLVGHGLFKKMRVSFQERVKEVLAPLVGHTQYRTLMSFVQPKPFT FT FSLTPVTFHAAQGRKWSNPLGPMDPPPPGPAGPDEPSDPLIGPTLSLLALGIPDDDLDA FT DLDKIAKRNTRKDELLAELTQTPTKVEVPPAPEDAAGPQNPTTTTPTAADPPTTPADEP FT TPEAPKHHPTLTAVDIQLLNDLRFTDLDIQHGIDGPILPLHRNPAELTPTLIADINCAP FT FVEMLSARHIPIISRPVNNARAHALASDVKNAKIGKLLTKQPQDWLKSWDARCSTSELQ FT LNVAVIHGAGGSGKSYSIQETLRNKRETLEHTTIVTPTVELRNDWSGKIPRMAPDRIKT FT YEKAMLQPGTATVILDDYGKLPPGYLDSYAVLHPNVELFILTGDHRQTTYHVSDPEANT FT FHLTSEIQEFRPLCAYYINATHRQPRRLANVLGTHSSKTSGGAVLEADMIPDDATVLVP FT SRVEQAKLIDLNRRAMTYAGCQGLTAKNVTIVLDRDTPLCTDETMYTALSRASESITFV FT NTYSKEPGFLAKLDCAPYLKTMLTGVHEEEYQPDDTPANDNPTEPELTKTHLPVENDNV FT FFEPLVEQCTDKDTRELFTAEHGKTNLAQTSSLEVQLFPHQQAKDDALMTETMKARITT FT STRDANLRELHDTNALSGLLFEFYADFMKVPKDPMPFNPTLWAESRARAERTYLSKTAA FT QILNGANRQDPDFPDNFVALFLKSQWVKKLEKVGMQFKAGQTISSFKQQVVLLTTTLAL FT YLRACRNSHQPDNVFIMCEKTSNQFNDFVKDWNFERDNYTSDYTQYDKSQDGLFLNFEL FT RKARHFGVPQAVLDAYTAIKTDAKVFADTLKIMRLSGEGPTFDANTECNIAYDAARFQL FT SDVKACYAGDDLARDRNCPERASWKYISHQFTLQAKPLVTRKPDFCGWSLTKHGIVKNP FT KQLWQSMQLGLKLDKLKDIVPSYSLDFHHAYALGDKVYDIFTEEEMAYHQATVRLMHKM FT GVHPKIAGDHLPVFHITSDRLLKETKPIPALVPTISITPPATPPPEAEVELTTFTTHIP FT DSRPIRNVHFD" FT CDS 4355..5191 FT /codon_start=1 FT /product="30kDa protein" FT /db_xref="UniProtKB/Swiss-Prot:Q6YNQ6" FT /protein_id="AAL17723.1" FT /translation="MSVTPDPTVGQALHPFSVPPTPAELDHIAAFYNVHPTPPLIGFSL FT IGSVNIRPGGTSQRLTGIFDATPNSLPDAVASLSAHNFHHLLDWHHSIDPAHIAAAPHP FT HTPAIKAALQRLTLIPNVIIYAPPTPSPPPPPAPTQPTRPTPGPAFFPQPFKVELHHPT FT PKTSSLPAPSLPTSLPPIITNQYLRLQISTPTGARQTYLRALIPKSPDLTDFILRIDLT FT EYHAHLIFTAELTRDHSITLARGPYVWPTFLPPSINNLIKLTHAAAEPSLQLTEIS" FT CDS 5198..6400 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q6YNQ5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/Swiss-Prot:Q6YNQ5" FT /protein_id="AAL17724.1" FT /translation="MDPNLDQDTLPTHEEIDNDVDSAEEEPPEPPLLPDDIDDDDSHGS FT RTRRQVKPPPELLRAVGACLISGHYDGGNYFRWQQSIAALYAKAGYAGDIRFHQAAIQE FT YALDPVLPAPRVSYDLLVAHAGLRYQALLNEQLRTGKTPPADEALKDAVRKAAQAAYDN FT AVKTGDYTPLIDIAFKGVDINKHASDVAQLAKMSVTMDGTHIKFTAGEMPKDKVITSNS FT MASPNTVMNILNLITTSANVTAVTCGIEFAIACAHQGSSRYTRHTGTSTGGSTFELIAA FT HVKEHCTIRQFCSYFAKVVWNHLLTHATPPVNWAKHGFTLDSRYAAFDFFDAVTNAAAL FT PPKNGLIRAPTSEEIRAHNLNAHLLINASRQDDQVSSSAQYTAAIAQAGGFKRPQIGWG FT E" FT misc_feature 5831..6400 FT /note="alternative start codon; contains shortened coat FT protein" FT CDS 6279..6677 FT /codon_start=1 FT /product="14kDa protein" FT /db_xref="UniProtKB/Swiss-Prot:Q6YNQ4" FT /protein_id="AAL17725.1" FT /translation="MPTYSSMLHAKMIKSPAALNTPQPSPKQAVSNAHRLDGGSSYVVS FT LSEISSCPTSTTNSLFAAATPSTLLLSALYCTPPSQLRMKSSCTLTLFIPPLNTAASPT FT LPDTSCHGEWNTTTRPCLAASTALMYSL" FT CDS 6431..6817 FT /codon_start=1 FT /product="14kDa protein" FT /db_xref="UniProtKB/Swiss-Prot:Q6YNQ3" FT /protein_id="AAL17726.1" FT /translation="MSDFNDELVIRCGDTVYSPIVCSVLHPTISAKDEIVMHVDVIHSP FT PKYRGFANSTRHIMPWRMEHNHKTMSSGLHCTDVLAVEKEALPGAIATFFSSLKTPINI FT TFPDKVHVTREPLKPNDNAHIDEA" XX SQ Sequence 6966 BP; 1813 A; 2517 C; 1288 G; 1348 T; 0 other; gaaaaccaca tcgcaaatcc ccgcaccagc catagccaca agccagtatt ctgccacgcc 60 ccaccccacg gaggctgtcc ttttaccttg tcgctatgtc tgcactccgc tctctcgcct 120 ctgacttgtc agaccccaca acaaaagccg ctgccaacga aatagctttc aaacacttct 180 ccgacggtat caaatccact aaattatcct tcccctacaa agtcgacgaa tccactgcca 240 tcctcctgga gaaagaaggc gtactcacca acccattctc caccaccctt catacgcatg 300 ccgctgagaa gatgctggaa aatcgcaccc tcaatgaagt tggaaagaaa ctgaaagtgc 360 acacgggacc cttcacgttc atccagttca aaacgggcaa gctcggacac gtcggcagag 420 gccacaacca aggagaccaa atcattaact acgcacgcga ggccaaggac ctctcccgat 480 ttgaaaccct tgacacagcc gtcgtccccc ccgttcataa cagagtggcg ctccttcacg 540 acacccttca ctttctcagc ccaaggcaac tcgctcaact cttccaccac aacccaaacc 600 tccacctact ctatgcgacc ctggttctcc ccgtggaagc cctccacaat ctcccttccc 660 ttaaccccca cgcctacacg ctcgaatact tcagcaatgg cgacttcgct tacatgcccg 720 gaggtcacgc tggctcagga tactaccaca gcgctgaaac cctccattgg cttcgggcag 780 gccagatcaa gttaggccac ttctcccttt ctctcaacaa ggaagacagc ttcggagccc 840 accatatatt cactgtcaca agacagttca ttccccccgc cccccgctac ctctacgctg 900 aaaccgaact ggtcaccctg cacgacatct tttaccccgc cgactctaac gttcagcggc 960 cctaccctgc aacgttgatc aatcgcatgg aactctactg ccgctcagtc aaagccgtct 1020 cacttaggga catattcgca aaatttcgcc aggtcaccga aaccgcccaa ttaagacata 1080 tgcgcatctc tgacgtcata cgactagcca actatttcct tttcagcgcc tccctctccg 1140 gcaccaacga ctacccctca cttgttggcc acggactctt caagaagatg agggtctcct 1200 ttcaagaacg agtcaaggaa gtcctcgccc ccctcgtagg acatacacaa tatcgaaccc 1260 tcatgtcctt cgttcagccc aaacccttca ccttcagcct cacccctgtc actttccacg 1320 cagctcaagg gaggaaatgg agcaacccac tgggcccaat ggacccacca ccaccaggac 1380 ccgcaggccc tgatgaacct tccgaccctt tgatcggccc caccctctct ctccttgctc 1440 ttggaatacc cgacgacgac ctcgacgcag atctcgacaa aatcgccaaa cgcaacaccc 1500 ggaaagacga actcctcgct gagctcactc agacacccac caaggtggaa gtcccacccg 1560 cacccgagga cgccgctggg ccccagaacc ccaccaccac cacaccgacg gccgccgacc 1620 ctcctaccac acctgcggac gaacccacgc cggaggcgcc caaacaccac cccacactca 1680 ccgccgtcga catacaactt ctcaacgatc tccgcttcac ggatctcgac atccagcacg 1740 gcatagatgg acccatcctt cccttgcatc gcaaccccgc cgaactaaca ccgacgctca 1800 tcgccgacat taactgcgcc cccttcgtcg agatgctctc tgcgcgccat atcccaatca 1860 tctcaagacc ggtcaacaac gcacgagccc acgcactcgc ttcggacgtc aagaacgcaa 1920 agataggcaa actcctcact aagcaacccc aggactggct caaatcttgg gatgcccgtt 1980 gctccacctc agaactacaa ctcaacgtcg ccgtcatcca cggtgccggc ggcagcggca 2040 agtcctactc tattcaggag acgctacgca ataaaagaga aacgcttgag cacaccacca 2100 tcgtaacacc caccgtcgag ttgcgaaacg actggtctgg caagatcccc cgcatggctc 2160 cagaccgcat caagacctat gaaaaagcta tgctccaacc aggcaccgcc actgtcatac 2220 tggacgacta tggcaaactg ccacctggat acctcgactc ctacgccgtt ctccacccga 2280 acgtcgagct attcatactc acaggagacc acagacaaac cacctaccac gtctccgacc 2340 cagaagccaa cacattccat ctcacttccg agatccagga attccgaccc ctctgcgcct 2400 actatattaa cgccactcac cgacaacccc gtcgcctcgc caatgtactt ggtactcact 2460 catccaaaac ctcaggtgga gccgtgctag aggcagacat gattccagac gacgccaccg 2520 tccttgtgcc ttcaagagta gagcaggcca agcttataga cctcaacaga cgcgccatga 2580 catacgcagg gtgtcaagga ctaacagcca agaacgtcac catcgtccta gaccgagaca 2640 cccccctctg cacggatgaa accatgtaca ccgctctctc tcgggcgtct gaaagcatca 2700 ccttcgtcaa cacctactcc aaggaaccag gattcctcgc caagctggac tgcgccccat 2760 acctcaaaac tatgctcact ggagtgcacg aagaagagta ccaaccagac gacactcccg 2820 ccaacgacaa ccccacagag ccagagctca cgaaaactca ccttcccgtt gagaacgaca 2880 acgtcttctt cgaacccttg gtcgaacaat gcactgataa agacacccgt gagctcttca 2940 ccgccgaaca cggcaaaact aacctcgcgc aaaccagctc acttgaggta caactctttc 3000 cccaccaaca agccaaggat gacgccctca tgacggagac gatgaaggcc cgcatcacga 3060 ccagcacccg cgacgccaac ctacgcgagt tgcacgacac caacgcactt tccggtctgc 3120 tcttcgaatt ctacgctgat ttcatgaaag tcccaaaaga ccccatgccc tttaacccca 3180 ccctctgggc tgaaagtcgc gcccgcgctg aacgcaccta cctcagcaag acagccgctc 3240 aaatcctcaa cggtgccaat agacaggacc ccgacttccc tgacaacttc gtggccctct 3300 tcctcaagag tcaatgggtt aagaaacttg aaaaagtggg tatgcaattc aaagccgggc 3360 agacaatatc gtccttcaaa cagcaagtcg tgctgctcac cactacgctc gccttgtacc 3420 tcagagcctg ccgcaactcg catcaaccag acaacgtctt cataatgtgc gagaaaactt 3480 ccaaccaatt caatgatttc gtcaaggact ggaactttga acgcgacaat tacacgagcg 3540 attacacaca atacgacaaa tctcaagacg gacttttcct caactttgag ctgcgcaaag 3600 ccagacactt cggcgtccca caagctgtcc tagacgccta cacagccatc aaaacggacg 3660 ccaaagtctt tgccgacacc ctcaaaataa tgcgactaag cggggaagga cccaccttcg 3720 acgccaacac tgagtgcaac atcgcttacg acgcagcccg ctttcaactt tctgacgtca 3780 aggcctgcta cgctggagat gacctcgcac gcgaccgcaa ctgccccgag cgcgcttctt 3840 ggaaatacat cagccaccaa ttcacactcc aggccaaacc actcgtcact cgcaaacccg 3900 atttctgcgg ctggtcgctc acaaaacacg gaatcgtcaa gaacccaaaa caactctggc 3960 agtccatgca actgggactt aaactcgaca agctcaaaga catcgtcccc tcttactcac 4020 ttgacttcca ccacgcctac gcactcggag acaaagtcta tgacatcttc actgaagagg 4080 aaatggccta ccaccaagcc accgtgcgcc tcatgcacaa gatgggagtc cacccaaaaa 4140 tcgccggaga ccacctacca gtcttccaca tcacttccga ccgcctgctc aaggaaacga 4200 agccaatacc agcccttgtg ccgacaattt ctataacccc gcccgccacg ccacccccgg 4260 aggcagaagt ggaactcaca accttcacca ctcacattcc agattctaga cctattagga 4320 atgtgcattt tgattaagtt tgtggttctt tgaaatgtcc gtcacgcctg atccgacagt 4380 aggacaagct ttacacccct tctccgtccc tcccaccccc gccgaactcg atcacatcgc 4440 tgctttctac aacgttcacc ccaccccacc tctcattgga ttcagcctca ttggaagtgt 4500 caatatccga cctggcggca cgtcgcaacg cctcactggc attttcgacg ccacaccaaa 4560 ctccctgccc gacgctgttg cctcgctctc tgcccacaat ttccaccacc tccttgactg 4620 gcaccactcc attgaccctg cccacatcgc cgctgcaccg catccacata cccctgccat 4680 taaagcagcc ctccaacgct tgacgctcat cccgaacgtc atcatctacg ctccccccac 4740 ccccagccct ccccccccac cggcacccac ccagcccact cgacctaccc cgggacccgc 4800 attctttccc caacccttca aggttgagtt acaccatccc acccctaaaa cctcctcact 4860 acccgcacct tccctaccca cctctcttcc tcccatcatc accaaccagt atctccgtct 4920 ccaaatttcc acccccactg gagcacgaca gacttatctc agagccctaa tcccaaagtc 4980 ccctgatctt acagacttca tcctcaggat agacctcact gaatatcacg cacacctcat 5040 attcaccgcc gaactcacgc gcgaccattc catcactctc gcaagaggtc cctacgtttg 5100 gcccactttc ctgccccctt ccatcaacaa cctcattaaa ctcacacacg ctgctgctga 5160 accttcactt caactaactg agattagtta agttgttatg gatccgaatt tagatcagga 5220 caccctccca actcacgaag aaattgacaa cgacgtcgac tccgccgaag aagaaccacc 5280 tgagcccccc ctactccccg acgatataga cgacgacgat tcccacggat ctcgcacccg 5340 gcgccaggta aagcctccac ctgaacttct ccgcgccgta ggagcttgcc tcatcagcgg 5400 acactacgac ggagggaact acttccgttg gcagcaaagc atcgcagcac tctacgccaa 5460 ggcaggatac gccggcgaca tccgattcca tcaagccgca atccaggaat acgcactcga 5520 ccccgtactc ccagccccgc gcgttagcta cgatctccta gtcgcccacg caggtctccg 5580 ctaccaagcc ctgctcaacg aacaactacg tacaggaaaa accccccccg ccgacgaagc 5640 cctcaaagac gccgtacgca aagctgccca ggccgcatac gacaacgccg tcaagacagg 5700 tgattacacc cccctcatcg acatagcatt caaaggagtt gacatcaaca aacacgcgtc 5760 agacgtcgcg caactcgcca agatgagtgt cacaatggat ggaacgcata tcaaattcac 5820 cgccggagaa atgcccaagg ataaagtcat caccagcaat tcgatggcca gcccaaacac 5880 cgtcatgaac atcctcaacc tcatcaccac tagcgccaat gtcaccgccg tcacctgtgg 5940 aattgagttc gcaatcgcct gcgctcacca aggctcctcc cgatacaccc gtcacacggg 6000 cacgtccaca ggaggatcga cattcgaact catcgccgcc cacgtcaagg aacactgcac 6060 catcagacag ttctgctcct acttcgctaa agtcgtctgg aaccaccttc tgacccacgc 6120 aacacccccg gtcaactggg ccaaacacgg cttcactctg gacagtcgct acgccgcatt 6180 tgacttcttt gacgctgtca ccaacgccgc cgccctacca cccaagaatg gactcattcg 6240 cgcccccacc tctgaggaaa ttcgcgctca caatctgaat gcccacttac tcatcaatgc 6300 ttcacgccaa gatgatcaag tctccagcag cgctcaatac accgcagcca tcgcccaagc 6360 aggcggtttc aaacgcccac agattggatg gggggagtag ttatgttgtt tctttatctg 6420 aaatatcatc atgtccgact tcaacgacga actcgttatt cgctgcggcg acaccgtcta 6480 ctctcctatt gtctgctctg tattgcaccc caccatctca gctaaggatg aaatcgtcat 6540 gcacgttgac gttattcatt ccccccctaa ataccgcggc ttcgccaact ctacccgaca 6600 catcatgcca tggagaatgg aacacaacca caagaccatg tctagcggcc tccactgcac 6660 tgatgtactc gctgtagaaa aggaggcctt accaggcgca attgctactt tctttagctc 6720 tcttaaaaca cctatcaata ttaccttccc agacaaggtt catgttaccc gcgaaccttt 6780 gaaacccaat gacaatgccc atattgatga ggcttaattt atttctttac ttattttctc 6840 ttttggagtt catttcgagg ggctagctta gcctagtcat gtgtttgccc tcacaccatc 6900 cgaccaaagt acaggtcaat tccgcacgcc tatcttaaca ggctatggat ttttgtccca 6960 tgcgac 6966 //