ID   AY049209; SV 1; linear; genomic DNA; STD; VRL; 1186 BP.
XX
AC   AY049209;
XX
DT   06-MAR-2002 (Rel. 71, Created)
DT   22-DEC-2015 (Rel. 127, Last updated, Version 4)
XX
DE   Tomato chlorotic mottle virus isolate RJ-Sf1 replication-associated protein
DE   (AC1) gene, partial cds; putative AC4 protein (AC4) gene, complete cds; and
DE   capsid protein (AV1) gene, partial cds.
XX
KW   .
XX
OS   Tomato chlorotic mottle virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1186
RX   DOI; 10.1007/s00705-002-0917-0.
RX   PUBMED; 12556993.
RA   Ribeiro S.G., Ambrozevicius L.P., Avila A.C., Bezerra I.C., Calegario R.F.,
RA   Fernandes J.J., Lima M.F., de Mello R.N., Rocha H., Zerbini F.M.;
RT   "Distribution and genetic diversity of tomato-infecting begomoviruses in
RT   Brazil";
RL   Arch. Virol. 148(2):281-295(2003).
XX
RN   [2]
RP   1-1186
RA   Ribeiro S.G., Ambrozevicius L.P., de Avila A.C., Calegario R.F.,
RA   Fernandes J.J., Lima M.F., Mello R.N., Rocha H., Zerbini F.M.;
RT   ;
RL   Submitted (31-JUL-2001) to the INSDC.
RL   Departamento de Fitopatologia, Universidade Federal de Vicosa, Av. P.H.
RL   Rolfs s/n, Vicosa, MG 36571-000, Brazil
XX
DR   MD5; 0bdea1f3ffd295e53beb145cf4f4782d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1186
FT                   /organism="Tomato chlorotic mottle virus"
FT                   /isolate="RJ-Sf1"
FT                   /mol_type="genomic DNA"
FT                   /note="acronym: TCMV"
FT                   /db_xref="taxon:172391"
FT   gene            complement(<1..705)
FT                   /gene="AC1"
FT   CDS             complement(<1..705)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /note="Rep"
FT                   /db_xref="GOA:Q8QPU1"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QPU1"
FT                   /protein_id="AAL82836.1"
FT                   /translation="MPPPKRFRLSAKNYFLTYPQCSLTKHETLSQLLAIQIPVNKLFIR
FT                   VARELHEDGQPHLHVLIQFEGKFVCTNNRLFDLVSPTRSAHFHPNIQGAKSSSDVKAYV
FT                   EKDGDFIDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILKEEQPKDYVLQHH
FT                   NIRSNLERIFAKAPEPWVPPFPLSSFTNVPDEMKAWADDYFGRDAAARPERHISMIMEV
FT                   IQVRERSMWACRC"
FT   gene            complement(255..554)
FT                   /gene="AC4"
FT   CDS             complement(255..554)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="putative AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QPU0"
FT                   /protein_id="AAL82837.1"
FT                   /translation="MKMGNLICTSSYSSKGNSSAQTTDYSTLYPQQGQHISIRTFRELR
FT                   ARQMSRHTWRKTETSLIMEFSKSMEDQLEEVSNLQTTRMPRSLTQDQSWRPSIY"
FT   gene            1035..>1186
FT                   /gene="AV1"
FT   CDS             1035..>1186
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="capsid protein"
FT                   /note="CP"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QPT9"
FT                   /protein_id="AAL82835.1"
FT                   /translation="MPKRDAPWRHMAGTSKISRSTNYSPRARVGPRPNKAYEWVNRPMN
FT                   GLQAHV"
XX
SQ   Sequence 1186 BP; 305 A; 262 C; 278 G; 341 T; 0 other;
     gcatctgcag gcccacattg atcgttcccg tacttgaatc acctccatta tcatactgat        60
     atgcctctcc ggccgcgcag cggcatccct tccgaaatag tcgtctgccc aagctttcat       120
     ctcgtctggg acgttagtaa atgacgagag gggaaacgga ggaacccacg gttctggagc       180
     ctttgcgaaa atacgttcca aatttgaacg aatattatga tgttgaagga cgtaatcttt       240
     cggttgttcc tcctttaata tattgagggc ctccatgact gatcctgcgt taaggacctt       300
     ggcatacgtg tcgtttgcag attgctgacc tcctctagct gatcttccat cgatttggaa       360
     aactccatga tcaatgaagt ctccgtcttt ctccacgtat gccttgacat ctgacgagct       420
     cttagctccc tgaatgttcg gatggaaatg tgctgacctt gttggggata caaggtcgaa       480
     taatctgttg tttgtgcaga cgaatttccc ttcgaactgt atgaggacgt gcaaatgagg       540
     ttgcccatct tcatgtaatt ctctggcaac acgaatgaac aacttattaa caggtatttg       600
     tatggctaat aattgggaaa gtgtttcgtg tttggttaaa gaacactggg gataagtgag       660
     gaaataattc ttggcactta aacgaaagcg tttgggtggt ggcattctcg taaataaagg       720
     ggtgtcacca attggggtct cgctcaactc cgctagtcaa ttggtgactg gtgtacaata       780
     tatagtagaa gcctctatag aactctcaat ctcgttcgaa cacgtggcgg ccatccgtat       840
     aatattaccg gatggccgcg aaaaaatttt ggacttgggc cgctttaatt gggcccgttc       900
     tctttattga atgaaagtaa tgtgtggccc aaccatgtta agtctgacga gcttagatat       960
     ttttaacaac ttaacgccca agttgtataa cggctataaa ttgaacgcgc atgtgataat      1020
     aactttaatt gaaaatgcct aagcgcgatg ccccatggcg ccacatggca gggacgtcta      1080
     agattagccg ttccactaat tattctcctc gtgcacgagt tgggcctcga cctaacaagg      1140
     cctatgaatg ggttaacagg cccatgaatg ggttacaggc ccatgt                     1186
//