ID   AY044139; SV 1; linear; genomic DNA; STD; VRL; 2768 BP.
XX
AC   AY044139;
XX
DT   06-AUG-2002 (Rel. 72, Created)
DT   31-AUG-2025 (Rel. 144, Last updated, Version 10)
XX
DE   Tomato leaf curl Sudan virus - [Shambat] precoat protein (V2), coat protein
DE   (V1), replication enhancer (C3), transactivation protein (C2),
DE   replication-associated protein (C1), and C4 genes, complete cds.
XX
KW   .
XX
OS   Tomato leaf curl Sudan virus
OC   Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes;
OC   Geplafuvirales; Geminiviridae; Begomovirus; Begomovirus solanumsudanense.
XX
RN   [1]
RP   1-2768
RX   DOI; 10.1007/s00705-004-0484-7.
RX   PUBMED; 15703848.
RA   Idris A.M., Brown J.K.;
RT   "Evidence for interspecific-recombination for three monopartite begomoviral
RT   genomes associated with the tomato leaf curl disease from central Sudan";
RL   Arch. Virol. 150(5):1003-1012(2005).
XX
RN   [2]
RP   1-2768
RA   Idris A.M., Brown J.K.;
RT   ;
RL   Submitted (06-JUL-2001) to the INSDC.
RL   Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
XX
DR   MD5; b4cd746bb46b318c9ea8537410393595.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2768
FT                   /organism="Tomato leaf curl Sudan virus"
FT                   /isolate="ToLCSDV-Sha"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:270146"
FT   gene            137..487
FT                   /gene="V2"
FT   CDS             137..487
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="precoat protein"
FT                   /note="movement protein"
FT                   /protein_id="AAL05298.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL
FT                   ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQASIMDVQAYV
FT                   PKAQNIQNVSKS"
FT   gene            279..1070
FT                   /gene="V1"
FT   CDS             297..1070
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /note="encapsidation of viral genome"
FT                   /protein_id="AAL05297.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAAPIVQGTNKRRSW
FT                   TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSFDKRHDLKHTGEVMCVSDVTRGNGLTH
FT                   RVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNE
FT                   PSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKIYNHIVYNHQEQGKYEN
FT                   HTENALLLYMACTHASNPVYATLKIRVYFYDSISN"
FT   gene            complement(1067..1471)
FT                   /gene="C3"
FT   CDS             complement(1067..1471)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="replication enhancer"
FT                   /protein_id="AAL05302.1"
FT                   /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITDHDKRPFLMNHDI
FT                   ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGHFLKVFRYQVLRYLDNIGVISINN
FT                   VIRAVDHVLYNLIQKTTDVTEHHDIKYKFY"
FT   gene            complement(1212..1619)
FT                   /gene="C2"
FT   CDS             complement(1212..1619)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="transactivation protein"
FT                   /protein_id="AAL05301.1"
FT                   /translation="MQPSSPSTSHCSQVPIKVQHKLAKKKPIRRKRVDLDCGCSYYLHL
FT                   NCINHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRPRQEAISNEPRHHFHTDKIQPQ
FT                   HQEGTGDSQMFSQLPNLDNLTASDWSFLKSI"
FT   gene            complement(1528..2607)
FT                   /gene="C1"
FT   CDS             complement(1528..2607)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="replication-associated protein"
FT                   /note="rep"
FT                   /protein_id="AAL05299.1"
FT                   /translation="MAPPKRFQINCKNYFLTYPQCSLTKEETLSQIKNLDTPTNKKYIK
FT                   ICRELHENGEPHIHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYI
FT                   DKDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRIIKELAPKDYILQFH
FT                   NLTNNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNISLKNWALKNATFVTLYEPL
FT                   FSSTNQGPTQASQEETNQA"
FT   gene            complement(2148..2450)
FT                   /gene="C4"
FT   CDS             complement(2148..2450)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="unknown"
FT                   /protein_id="AAL05300.1"
FT                   /translation="MGNHISMCLSSSKANSSAKINDSSTWSPQVGQHISIRTFRELNPH
FT                   LMSSPTSIRMETPSIGVSFRSMEGLQGEDNNQPMTLTPQHLTQAVSQRLLESLKN"
XX
SQ   Sequence 2768 BP; 738 A; 540 C; 608 G; 882 T; 0 other;
     accggatggc cgcgcccctc ttttttagtg ggtcctaccc atgtcgctgt catccaatca        60
     aattgcagct tgaaacgtta tataactgtc ctgttgtctt taaatacttg gtccccaagg       120
     ttttctgtct tccaaaatgt gggacccact cctgaatgaa tttccggaat ctgttcacgg       180
     atttcgttgt atgctagcca taaaatattt acaggccgtt gagcaaacat acgagcccaa       240
     tactttgggc cacgatttaa ttagggatct tatttctgtt ataagggccc gtgactatgt       300
     cgaagcgtcc cggcgatata atcatttcca cgcccgtctc gaaggttcgc cgaaggctga       360
     acttcgacag cccatacagc aaccgtgctg ctgcccccat tgtccaaggc acaaacaagc       420
     gtcgatcatg gacgtacagg cctatgtacc gaaagcccag aatatacaga atgtatcgaa       480
     gtcctgatgt tccccgtgga tgtgaaggcc catgtaaggt ccaatcgttt gacaagcgcc       540
     atgatttgaa gcatacgggt gaggtaatgt gtgtttcaga tgtaacacgt ggtaatggcc       600
     ttactcatcg tgttgggaaa cgtttttgta tcaagtctat ttacattgtt ggcaaagtgt       660
     ggatggatga gaacattaag gtgaagaatc atactaacac ttgtatgttc tggcttgttc       720
     gggatcgtcg tccagttact actccctatg gatttggaga attgtttaac atgtatgata       780
     atgaaccatc tactgccact attaagaacg atctgcggga tcgttgtcag gttcttaaga       840
     ggttcactgc tagcctgagt ggtggtcaat atgcgtccaa agagcaatgt gtcattaggc       900
     gattttataa gatttataat catattgttt ataatcatca agagcagggg aaatatgaga       960
     atcatactga gaacgctctt ttattgtata tggcatgtac tcatgcttct aaccctgtgt      1020
     atgctactct taaaataagg gtgtacttct acgattcaat atcgaattaa taaaatttat      1080
     attttatatc atgatgttct gttacatctg ttgtcttttg aattaaatta tacaatacat      1140
     gatcaactgc tctaattaca ttattaatgg aaattacacc aatattatct aaatatctaa      1200
     gaacttgata tctaaatact tttaagaaat gaccagtctg aggctgtaag gttgtccaga      1260
     ttcggaagtt gagaaaacat ttgtgaatcc ccagtacctt cctgatgttg tggttgaatc      1320
     ttatctgtat ggaaatgatg tcgtggttca ttagaaatgg cctcttgtcg tggtctgtta      1380
     tcttgaaata gaggggattg tttatctccc agataaaaac gccattctct gcttgaggag      1440
     cagtgatgag ttcccctgtg cgtgaatcca tggttgatgc agttgaggtg gaggtagtat      1500
     gagcagccac agtctaggtc tacacgttta cgcctgattg gtttcttctt ggctagcttg      1560
     tgttggacct tgattggtac ttgagaacaa tggctcgtag agggtgacga aggttgcatt      1620
     cttgagagcc caattcttta atgatatgtt tttctcttca tctagatatt ccttatatga      1680
     ggaggtaggt cctggattgc agagaaagat agtgggaatt ccgcctttaa tttgaatggg      1740
     cttcccgtac tttgtattgc tttgccagtc cctctgggcc cccatgaact ctttaaagtg      1800
     ctttaaataa tgcgggtcta cgtcatcaat gacgttgtac cacgcatcat tactgtatac      1860
     ctttggactc aggtctagat gtccacacaa ataattgtgt gggcctagag acctggccca      1920
     cattgtcttg ccggtcctgc tatcaccctc tattacaata ctattaggtc tccatggccg      1980
     cgcagcggaa gacatgacgt tctcggacac ccagacttca agttcctcag gaacttgatt      2040
     aaaagaagaa gataaaaaag gagaaatata aggagccggt ggctcctgaa aaatcctatc      2100
     taaattatta gttaaattgt gaaactgtaa aatataatct ttcggagcta attctttaat      2160
     gattctaaga gcctctgact tactgcctga gttaagtgct gcggcgtaag cgtcattggc      2220
     tgattgttgt cctccccttg cagaccttcc atcgatctga aactcacccc aatcgatggt      2280
     gtctccatcc ttatcgatgt aggacttgac atcagatgag gatttagctc cctgaatgtt      2340
     cggatggaaa tgtgctgccc tacttgggga gaccaggtcg aagaatcgtt gattttggca      2400
     cttgaatttg ccttcgaact ggataagcac atggatatgt ggttccccat tctcgtggag      2460
     ttctctgcaa attttgatgt attttttatt tgttggagta tctaggtttt ttatttggga      2520
     aagtgtttct tcttttgtta aggagcattg aggatatgtg aggaaataat ttttgcaatt      2580
     tatttggaaa cgcttaggag gagccatatg gtcaatgagt accgattgac cagagatttc      2640
     atttatcccc ggtgtatcgg tactcaatat atagtgagta ccaaatggca ttttggtaat      2700
     tgtgtaaaag cacttcgaaa ttcaaaattc aaaattcaaa ttcccaaagc ggtcatccgt      2760
     ataatatt                                                               2768
//