ID AY044138; SV 1; linear; genomic DNA; STD; VRL; 2780 BP. XX AC AY044138; XX DT 06-AUG-2002 (Rel. 72, Created) DT 20-JUN-2006 (Rel. 88, Last updated, Version 7) XX DE Tomato yellow leaf curl virus - Gezira precoat protein (V2), coat protein DE (V1), replication enhancer (C3), transactivation protein (C2), DE replication-associated protein (C1), and C4 genes, complete cds. XX KW . XX OS Tomato yellow leaf curl virus - Gezira OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2780 RX DOI; 10.1603/0013-8746(2005)098[0827:GDOWBT]2.0.CO;2. RX AGRICOLA; IND43764757. RA Brown J.K., Idris A.M.; RT "Genetic differentiation of whitefly Bemisia tabaci mitochondrial RT cytochrome oxidase I, and phylogeographic concordance with the coat protein RT of the plant virus genus Begomovirus"; RL Ann. Entomol. Soc. Am. 98(6):827-837(2005). XX RN [2] RP 1-2780 RX DOI; 10.1007/s00705-004-0484-7. RX PUBMED; 15703848. RA Idris A.M., Brown J.K.; RT "Evidence for interspecific-recombination for three monopartite begomoviral RT genomes associated with the tomato leaf curl disease from central Sudan"; RL Arch. Virol. 150(5):1003-1012(2005). XX RN [3] RP 1-2780 RA Idris A.M., Brown J.K.; RT ; RL Submitted (06-JUL-2001) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; ee3ce39a56a8f1193b9786893e714324. DR EuropePMC; PMC2224568; 17977971. DR EuropePMC; PMC5796946; 29430354. XX FH Key Location/Qualifiers FH FT source 1..2780 FT /organism="Tomato yellow leaf curl virus - Gezira" FT /isolate="TYLCV-SD" FT /mol_type="genomic DNA" FT /db_xref="taxon:270150" FT gene 139..489 FT /gene="V2" FT CDS 139..489 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:Q8JNG1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q8JNG1" FT /protein_id="AAL05292.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATVMDIQAHV FT PKAQNIQNVSKS" FT gene 299..1075 FT /gene="V1" FT CDS 299..1075 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="encapsidation of viral genome" FT /db_xref="GOA:Q8JNG0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q8JNG0" FT /protein_id="AAL05291.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVPGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFSVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDYRDRFQVIRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1072..1476) FT /gene="C3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer" FT /db_xref="GOA:Q8JNF9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q8JNF9" FT /protein_id="AAL05296.1" FT /translation="MDSHTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDV FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLRVFRYQVLKYLDSLGVISINN FT VIRAVDHVLYNVLEKTIDVTENHDIKYNVY" FT gene complement(1217..1624) FT /gene="C2" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="C2" FT /product="transactivation protein" FT /db_xref="GOA:Q8JNF8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8JNF8" FT /protein_id="AAL05295.1" FT /translation="MQPSSPSTSHCSQVPIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRRHFHSDKIQPQ FT HQEGSGDSQMFSQLPNLDNLTASDWSFLKSI" FT gene complement(1533..2612) FT /gene="C1" FT CDS complement(1533..2612) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /note="rep" FT /db_xref="GOA:Q8JNF7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q8JNF7" FT /protein_id="AAL05293.1" FT /translation="MAPPKRFQINCKNYFLTYPQCSLTREEALSQLQNLETPTNKKYIK FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYI FT EKEGDTLDWGQFQIDGRSARGGQQSANDAYAAAINSGSKAEALRVLRELAPRDYILQFH FT NLNSNLDRIFQEPPAPYSSPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIIIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL FT FSSTNQGPTQDSQEETNKA" FT gene complement(2153..2455) FT /gene="C4" FT CDS complement(2153..2455) FT /codon_start=1 FT /gene="C4" FT /product="unknown" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q8JNF6" FT /protein_id="AAL05294.1" FT /translation="MGNHIFMCLSNSRGNSSAKISDSSTWYPQAGQHISIQTFRELNPV FT PTSSLTSRRRATPSTGDSFRSMEGLQEGDNNLQTTLTPQQLTLEVRQRLLEYLGN" XX SQ Sequence 2780 BP; 765 A; 546 C; 614 G; 855 T; 0 other; accggatggc cgcgcccgaa aaaaaaaagt ggcccccacg cacaatttta tgttagccaa 60 tcaaattaca tcatgaaacg ttagataagt attcatttgt ccttatatac ttggtcccca 120 agttgtttgt ccagcaatat gtgggatcca cttctaaatg aatttcctga atctgttcat 180 ggatttcgtt gtatgttagc tattaaatat ttgcaggccg ttgaggaaac ttacgagccc 240 aatacattgg gccacgattt aattagggat cttatatctg ttgtaagggc acgtgactat 300 gtcgaagcga ccaggcgata taatcatttc cacgcccgtc tcgaaggttc gccgaaggct 360 gaacttcgac agcccataca gcaaccgtgc tgctgtcccc attgtcccag gcacaaacaa 420 gcgacggtca tggacataca ggcccatgta ccgaaagccc agaatataca gaatgtatcg 480 aagtcctgat gttccccgtg gatgtgaagg cccatgtaag gtccagtctt atgagcaacg 540 ggatgatatt aagcatactg gtattgttcg ttgtgttagt gatgttactc gtggatccgg 600 aattacccac agagtgggga agaggttctg tgttaaatcg atatattttt taggtaaagt 660 ctggatggat gaaaatatca agaagcagaa tcacactaat caggtcatgt tcttctcggt 720 ccgtgataga agaccctatg gaaacagccc aatggatttt gggcaggttt ttaatatgtt 780 cgacaatgag cccagtaccg caaccgtgaa gaatgattac agggataggt ttcaagtgat 840 caggaaattt catgctactg tcattggtgg gccttctgga atgaaggaac aggctttagt 900 taagagattc tttagaatta acagtcatgt aacttataat catcaagagg ctgccaagta 960 cgagaatcat actgagaacg ccttgttatt gtatatggca tgtacgcatg cctctaatcc 1020 agtgtatgca actatgaaaa tacgcatcta tttctatgat tcaatatcaa attaataaac 1080 attatatttt atatcatggt tctctgttac atctattgtc ttttcaagta cattatataa 1140 tacatgatca actgctctaa ttacattgtt aatagaaatt acaccaagac tatctaaata 1200 cttaagaact tgatatctaa atactcttaa gaaacgacca gtctgaggcc gtaaggttgt 1260 ccaaattcgg aagttgagaa aacatttgtg aatccccaga accttcctga tgttgtggtt 1320 gaatcttatc tgaatggaaa tgacgtcgtg gttcattaga aatggcctct ggctgtgttc 1380 tgttatcttg aaatagaggg gattgtttat ctcccagata aaaacgccat tctctgcttg 1440 aggagcagtg atgagttccc ctgtgtgtga atccatggtt gttgcagttg agatggaggt 1500 agtatgagca gccacagtct aggtctacac gcttacgcct tattggtttc ttcttggcta 1560 tcttgtgttg gaccttgatt ggtacttgag aacagtggct cgtagagggt gacgaaggtt 1620 gcattcttga gagcccaatt tttcaaggat atgttttttt cttcgtctag atattcccta 1680 tatgaggagg taggtcctgg attgcagagg aagatagtgg gaattccccc tttaatttga 1740 atgggcttcc cgtatttagt gttgctttgc cagtcccttt gggcccccat gaattccttg 1800 aagtgcttta aataatgcgg gtctacgtca tcaatgacgt tgtaccacgc atcattactg 1860 tacacctttg gacttaggtc tagatgtcca cataaatagt tatgtgggcc tagagaccta 1920 gcccacattg ttttgcctgt tctgctatca ccctcgatga taatactatt aggtctccat 1980 ggccgcgcgg cggaagacat gacgttctcg gacacccata cttcaagttc ctctggaact 2040 tgattaaaag aagaagataa aaaaggagaa ctataaggag ccggaggctc ctgaaaaatt 2100 ctatctaaat tactatttaa attatgaaac tgtaaaatat aatctctggg ggctaattcc 2160 ctaagtactc taagagcctc tgccttactt ccagagttaa ttgctgcggc gtaagcgtcg 2220 tttgcagatt gttgtccccc tcttgcagac cttccatcga tctgaaactg tccccagtcg 2280 agggtgtcgc cctccttctc gatgtaagac ttgacgtcgg aactggattt agctccctga 2340 atgtttggat ggaaatgtgc tgccctgctt ggggatacca ggtcgaagaa tcgctgattt 2400 tggcacttga atttcccctc gaattggata agcacatgaa gatgtggttc cccattctcg 2460 tggagttctc tgcaaacttt gatgtatttt ttatttgttg gggtttctag gttttgtaat 2520 tgggaaagtg cctcttctct tgttaaggag cactgaggat atgtgaggaa ataatttttg 2580 caatttattt ggaaacgctt agggggagcc atatggtcaa tgagtaccga ttgaccaaga 2640 tttgcactta tcccttgtat atcggtactc aatatatagt gagtaccaaa tggcactttg 2700 gtaatttggt aaaagcatat tgcaattcaa aattcaaatt tgaaaaatca aatcattaaa 2760 gcggccatcc gtataatatt 2780 //