ID   AY044132; SV 1; linear; genomic RNA; STD; VRL; 1125 BP.
XX
AC   AY044132;
XX
DT   25-JUN-2002 (Rel. 72, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Infectious salmon anemia virus segment 7, complete sequence.
XX
KW   .
XX
OS   Salmon isavirus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes;
OC   Articulavirales; Orthomyxoviridae; Isavirus.
XX
RN   [1]
RP   1-1125
RX   PUBMED; 12078979.
RA   Bierin E., Falk K., Hoel E., Thevarajan J., Joerink M., Nylund A.,
RA   Endresen C., Krossoyl B.;
RT   "Segment 8 encodes a structural protein of infectious salmon anaemia virus
RT   (ISAV); the co-linear transcript from Segment 7 probably encodes a
RT   non-structural or minor structural protein";
RL   Dis. Aquat. Org. 49(2):117-122(2002).
XX
RN   [2]
RP   1-1125
RA   Biering E., Hoel E., Jegatheswaran T., Falk K., Nylund A., Endresen C.,
RA   Krossoy B.;
RT   "The putative genomic segment 7 of infectious salmon anaemia virus (ISAV)
RT   encodes one spliced and one unspliced mRNA";
RL   Unpublished.
XX
RN   [3]
RP   1-1125
RA   Biering E., Hoel E., Jegatheswaran T., Falk K., Nylund A., Endresen C.,
RA   Krossoy B.;
RT   ;
RL   Submitted (06-JUL-2001) to the INSDC.
RL   R&D, Intervet Norbio, Thormohlensgate 55, Bergen 5008, Norway
XX
DR   MD5; 2f588a398907885b70c93701718339bc.
DR   EuropePMC; PMC3003268; 21092282.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1125
FT                   /organism="Salmon isavirus"
FT                   /segment="7"
FT                   /isolate="Bremnes 98"
FT                   /mol_type="genomic RNA"
FT                   /note="cRNA sequence"
FT                   /db_xref="taxon:55987"
FT   CDS             join(22..84,611..1027)
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /note="ORF 2"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JNI3"
FT                   /protein_id="AAK93943.1"
FT                   /translation="MDFTKVYGVLVDQLKLHGKDKVASFLSGSKVPGEDGISSTSGMLD
FT                   LLKDQVGSLSINDSMTEPKTELDPGLYPWLKWTETAYHSSTRSLASTIVMGALGQHRGS
FT                   GDGITMRELELSLGLDFTSECDWLKTCFVNKNFVFLSEQEIAVNMEVEKYICNEN"
FT   CDS             22..924
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /note="ORF 1"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JNI2"
FT                   /protein_id="AAK93942.1"
FT                   /translation="MDFTKVYGVLVDQLKLHGKDKVLNRFLWGLSLKHVIKYKENVQNM
FT                   SGVNFEVMVPEQGGKVVFSLTEMGSCVSCYGDDEPDEGSCELASENMDFPSCPLGNGDD
FT                   FCLSLALSTMRWSGMTRRNNFMDRFIGSFVHCTPVMIWLYEKMARRNHHKMVCHTCPDE
FT                   HKFSEKEELQGYYEECLEASTDIFLDELATVVTGGFFPVGLKGSWGGWYLKYVRYAGPL
FT                   EGSSGFIVNQRFYDRAQNRAGSRVVSMVEMDRDGVSFIYEKPSIYHSDGCTGTASRVWR
FT                   RDHNERAGVELRAGLHFRM"
XX
SQ   Sequence 1125 BP; 341 A; 189 C; 286 G; 309 T; 0 other;
     agctaagatt ctccttctac aatggatttc accaaagtgt atggtgtgct ggttgaccaa        60
     ctaaaacttc acggaaaaga caaggtacta aatagattcc tttggggtct gtccttgaag       120
     catgtgatta aatataaaga aaatgttcaa aacatgtccg gagtgaactt cgaggtaatg       180
     gttcctgaac aaggtggaaa agtggttttc agtcttactg agatgggatc atgtgtttcc       240
     tgctacgggg acgacgaacc tgacgagggg tcatgtgaac ttgcatctga gaacatggat       300
     tttccaagct gccctctcgg gaatggagat gacttctgtt tgtcactggc cctgagcaca       360
     atgagatggt caggaatgac taggagaaac aacttcatgg acagattcat tggaagcttt       420
     gttcactgta caccagtcat gatttggttg tacgagaaaa tggctaggag aaatcaccac       480
     aagatggtct gtcacacatg ccctgatgaa cacaagttca gcgaaaagga agagttgcag       540
     gggtactatg aggagtgtct ggaagcctct actgacattt tccttgatga acttgctact       600
     gttgttacag gtggcttctt tcctgtcggg ctcaaaggtt cctggggagg atggtatctc       660
     aagtacgtca ggtatgctgg acctcttgaa ggatcaagtg ggttcattgt caatcaacga       720
     ttctatgaca gagcccaaaa cagagctgga tccagggttg tatccatggt tgaaatggac       780
     agagacggcg tatcattcat ctacgagaag cctagcatct accatagtga tgggtgcact       840
     gggacagcat cgagggtctg gagacgggat cacaatgaga gagctggagt tgagcttagg       900
     gctggacttc acttcagaat gtgattggct gaaaacatgt tttgtaaaca agaattttgt       960
     gtttttgtct gagcaagaaa ttgctgtaaa catggaagtt gaaaaataca tttgtaatga      1020
     gaattaaagt taactttgtg atctaaaaag taactagtga caaaatatgt attatgttgt      1080
     acatggtgtt gatgataatt tttaaaacga aaaaaaaaaa aaaaa                      1125
//