ID AY038069; SV 2; linear; genomic RNA; STD; VRL; 3904 BP. XX AC AY038069; XX DT 31-JUL-2001 (Rel. 68, Created) DT 09-JUL-2004 (Rel. 80, Last updated, Version 2) XX DE Pelargonium chlorotic ring pattern virus isolate GR57, complete genome. XX KW . XX OS Pelargonium chlorotic ring pattern virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus. XX RN [1] RP 1-3904 RA Kinard G., Guaragna M.A., Jordan R.; RT "Characterization and genome organization of four unique viruses infecting RT geranium and their assignment to a new provisional genus in the RT Tombusviridae family (#VP64.13)"; RL (in) Unknown A. (Eds.); RL XITH INTERNATIONAL CONGRESS OF VIROLOGY; RL Unknown Publisher (1999) XX RN [2] RP 1-3904 RA Kinard G., Jordan R.; RT "Genome organization of Pelargonium chlorotic ring pattern virus: further RT implications for tombusviridae taxonomy"; RL Acta Hortic. 568:17-27(2002). XX RN [3] RP 1-3904 RA Jordan R.; RT ; RL Submitted (05-JAN-2001) to the INSDC. RL Floral & Nursery Plants Research Unit, USDA, ARS, US National Arboretum, RL 10300 Baltimore Ave, Bldg 010A, Room 238, Beltsville, MD 20705, USA XX RN [4] RC Sequence update by submitter RP 1-3904 RA Jordan R.; RT ; RL Submitted (08-JUL-2004) to the INSDC. RL Floral & Nursery Plants Research Unit, USDA, ARS, US National Arboretum, RL 10300 Baltimore Ave, Bldg 010A, Room 238, Beltsville, MD 20705, USA XX DR MD5; 38b4780f413a485825f3f26476c2b4c8. XX CC On Jul 8, 2004 this sequence version replaced gi:15010538. XX FH Key Location/Qualifiers FH FT source 1..3904 FT /organism="Pelargonium chlorotic ring pattern virus" FT /isolate="GR57" FT /mol_type="genomic RNA" FT /db_xref="taxon:167021" FT 5'UTR 1..16 FT gene 17..2308 FT /gene="RdRp" FT CDS 17..2308 FT /codon_start=1 FT /transl_except=(pos:734..736,aa:OTHER) FT /gene="RdRp" FT /product="87 kDa replicase protein" FT /note="p87; putative readthrough protein of p27 ORF" FT /db_xref="GOA:Q6EN28" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q6EN28" FT /protein_id="AAT69549.1" FT /translation="MFRSLVTAARVGGALAVFAKDLAVLPAEVGVFATRLIITRTIEVI FT PEYLHMIAPGASRIPKSVLTGQAFTSYDVEYNGTSDLENSCEVATEDVIEVEGKTTKVV FT KTRRARNKLQFSALLAIAAKNHFGGIVRPTRANELSVMKFLTSKCNDHKLTIAQTRSVC FT CAAFPLVFSPDEGDKLIFATLNSEEAFERRQDYSEAQGVGNCWLNLLSNPCSRRRWRRV FT VLRCFGMPVQEAFQFAKXGCLMQTCGVDTKVFRGEHHWVKEAHEASYIPPRRLFSISGL FT GPTIDWGVHNCSYVNLRRGLMERVYFVERKGKLEPCPRPAEGEFARLFKKYGHRVVGLC FT GSHSKISREEFVGSYQGRKRTIYTNAMTSLLDKPLELRDSFLSTFVKCEKLNFSKKPDP FT APRVIQPRDPRYNVELGCYLKRFEHSAYRALDKLWGGPTVMKGYTVQEIGKIIESKWNE FT YRRPVAIGFDMSRFDQHVSVDALKFEHKIYKRVFRGDQNLARLLDWQLENRGTAYAKDG FT WLKYKVNGKRMSGDMNTALGNCILACVITKSIMDGAGVKCSLINNGDDCVVFCEDGQCR FT AVEDSLTGGWLKFGFTCIAEKPVKVLEKVEFCQMQPVLTVGGYTMVRNPKISLSKDCHS FT TTPFDSIKLAREWSYSVGLGGRSLTVGVPVVHDFYQCLERNGKQHNNERKMRLFYGDYY FT GKWVAMHKGGNHFVTEEARHSFHLAFDISPDQQEAMEEFYQNKELCWEFSPFSKVHNDI FT EWTLAHPVPI" FT CDS 17..736 FT /codon_start=1 FT /gene="RdRp" FT /product="27 kDa putative replicase protein" FT /note="p27; shares amino terminus with p87 ORF" FT /db_xref="UniProtKB/TrEMBL:Q6EN27" FT /protein_id="AAT69550.1" FT /translation="MFRSLVTAARVGGALAVFAKDLAVLPAEVGVFATRLIITRTIEVI FT PEYLHMIAPGASRIPKSVLTGQAFTSYDVEYNGTSDLENSCEVATEDVIEVEGKTTKVV FT KTRRARNKLQFSALLAIAAKNHFGGIVRPTRANELSVMKFLTSKCNDHKLTIAQTRSVC FT CAAFPLVFSPDEGDKLIFATLNSEEAFERRQDYSEAQGVGNCWLNLLSNPCSRRRWRRV FT VLRCFGMPVQEAFQFAK" FT gene 2278..2611 FT /gene="p7-FS" FT CDS join(2278..2456,2458..2611) FT /codon_start=1 FT /gene="p7-FS" FT /product="putative 13 kDa movement protein" FT /note="p13; shares amino terminus with p7 movement protein FT via a putative -1 frameshift; ribosomal slippage" FT /db_xref="GOA:Q6EN26" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q6EN26" FT /protein_id="AAT69551.1" FT /translation="MDPSPPSADITSTQQNQKRGKAKNRLDVAHSGVSKASNSDLVGAN FT FITVAETVNFTVHLNFDWGLASPNLLLFITFNFFLVSVFSVGDRYSYYYQANSTADKFI FT SVAVGK" FT gene 2278..2463 FT /gene="p7" FT CDS 2278..2463 FT /codon_start=1 FT /gene="p7" FT /product="putative 7 kDa movement protein" FT /db_xref="GOA:Q6EN25" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q6EN25" FT /protein_id="AAT69552.1" FT /translation="MDPSPPSADITSTQQNQKRGKAKNRLDVAHSGVSKASNSDLVGAN FT FITVAETVNFTVHLNF" FT gene 2608..3621 FT /gene="CP" FT CDS 2608..3621 FT /codon_start=1 FT /gene="CP" FT /product="putative coat protein" FT /db_xref="GOA:Q911J4" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q911J4" FT /protein_id="AAK74064.1" FT /translation="MTASDSPITSKFAAQGAQWAIKLQTKGWRNLSKAQKREARSHGIG FT PSAPPPAIPKVNRVIMGNPNNSRRRGGGDGNAQKSMTITKQEFLGTIFSSDSITTYPID FT PRNVKTFPQISALALGYNKYKITSLQLRYSTRVTETEANVIMAFTTDSGDLPPRSKVDM FT YNIGTKFEVLASKPLVATIPVSKDTKYLRDKCSDDSKLVDCGALHFMVDGRHSGRLGEL FT FLQVTIVLSEPTFSQQSTQILRGTTQTGPTLVEFSQSGKSSTYKFLAVGRYVFSAYGKV FT LVKARQVGMDKAKQMHTSDDKSSNVIAEVEALEPGASIVLDYVEEEPPSFVCISRM" FT CDS 3242..3412 FT /codon_start=1 FT /gene="CP" FT /product="6 kDa unknown protein" FT /note="putative p6 nested within 37 kDa capsidprotein ORF" FT /db_xref="UniProtKB/TrEMBL:Q6EN24" FT /protein_id="AAT69553.1" FT /translation="MGGTPEDSENCSSRSPSCFPNPLSPNKALRFSGVRRKPAPLLWNF FT PRVASPALTSS" FT 3'UTR 3622..3904 XX SQ Sequence 3904 BP; 1030 A; 900 C; 1055 G; 919 T; 0 other; aaaagtaact ctcacgatgt ttagatcact agttactgca gctcgagtag gcggagcact 60 tgccgtgttt gcgaaggact tggcggtcct tccagcagaa gtgggggtgt ttgccactcg 120 actcatcatc accagaacca tcgaagttat tccagagtac ttacatatga ttgcgccagg 180 agcgtcgcga attcccaaat cagtccttac aggacaggcg ttcaccagtt acgatgtgga 240 gtacaatggc acgagcgacc tcgaaaacag ttgcgaggtt gccactgaag acgtgattga 300 ggtagagggc aagaccacca aggtcgtgaa gaccagaagg gcgcgaaaca agttgcaatt 360 ctccgccctg ctggctatcg cggcaaagaa ccattttggt ggtattgtac gccccacccg 420 agccaatgag ctgtctgtca tgaagttttt gacttctaag tgcaacgacc acaaactaac 480 catcgctcag acccggtctg tttgttgcgc tgcatttcct ctcgttttct ctcctgacga 540 aggcgataag ttgatctttg ccaccctcaa tagcgaggag gcattcgaga ggagacagga 600 ctactcagag gcccaggggg taggcaactg ctggttgaac ttactatcga acccatgcag 660 ccgtaggaga tggcgcaggg tagtgttgag atgctttggg atgcctgtcc aagaggcatt 720 ccaatttgcg aaataggggt gcctcatgca gacctgtggt gtggacacta aagtgttcag 780 gggtgaacac cactgggtaa aggaagcgca cgaggcatcc tatattcccc cgcgtagatt 840 gtttagtata tcaggtttag gtcccaccat agactggggg gtccacaact gtagctatgt 900 gaacctgcgc cgcgggttaa tggagcgagt ttactttgtg gaacgcaagg gtaagcttga 960 gccatgcccc cgaccggcgg agggagagtt cgctagactt ttcaagaagt atggccaccg 1020 tgtggtggga ttgtgtggaa gtcattccaa gatctcccgc gaagaatttg tgggatcgta 1080 tcaaggcagg aagcgcacga tctacactaa cgcgatgacc agccttcttg ataagcctct 1140 tgagctccgt gattcgtttt tgagtacgtt tgtaaagtgt gagaagttga actttagcaa 1200 gaagccagac ccagcgccta gagtcataca gcccagggat ccgcgttaca acgttgaact 1260 gggatgttat ttgaagcggt ttgagcactc tgcgtatcgc gcattggaca aattgtgggg 1320 gggacccacc gtgatgaaag gatacactgt ccaggagatt ggtaaaatca ttgagagcaa 1380 gtggaatgag taccggaggc ctgtggcgat cggtttcgac atgagtcgat tcgaccagca 1440 tgtttccgtg gatgccttga agttcgagca caagatctac aaacgggttt ttaggggtga 1500 ccagaatttg gctcgccttt tggattggca gctcgagaat cggggcacgg cttacgcaaa 1560 ggacggatgg ctgaagtaca aagtgaatgg gaaacggatg agtggagaca tgaacacggc 1620 cttagggaac tgcatcctgg cgtgtgtcat aaccaagagc attatggatg gggctggagt 1680 gaagtgctct ctgatcaaca atggggatga ttgtgtggtg ttctgtgaag atgggcaatg 1740 ccgcgctgtc gaggatagct tgacaggggg gtggcttaag ttcggattta catgcattgc 1800 cgagaaacct gtgaaagtgt tagagaaagt cgaattttgc caaatgcagc ctgtgctcac 1860 ggtcggtggc tacaccatgg taaggaaccc gaagataagt ttatcgaagg actgtcattc 1920 aactacaccg tttgacagca tcaagttggc tcgtgagtgg agctattccg tcgggttggg 1980 tggccgtagc ttaacggtcg gcgtcccagt tgtacatgat ttttaccaat gtttggaacg 2040 aaacgggaaa caacacaaca atgaaaggaa aatgcgactt ttttatgggg attattatgg 2100 aaagtgggtt gcaatgcaca aaggtggtaa tcactttgtg acggaggagg ctagacacag 2160 cttccatctc gcctttgaca tcagccccga tcaacaggaa gccatggaag agttctacca 2220 gaacaaggag ttgtgttggg agttctcccc attcagtaaa gtgcataacg atattgaatg 2280 gaccctagcc cacccagtgc cgatataaca tcaacgcagc aaaatcaaaa gagaggtaaa 2340 gccaagaata gactagacgt tgcccacagt ggagtcagca aagcatctaa cagcgatctc 2400 gttggtgcta atttcattac tgtggctgaa actgtcaact tcacggtgca ccttaacttt 2460 tgattgggga ttggcatctc ctaatttgct gcttttcata acgttcaatt tcttcttagt 2520 tagtgtgttt agtgttggcg atcgctattc gtactactac caggcaaaca gtaccgcaga 2580 caagttcatc tccgtcgcag taggaaaatg actgcctccg acagcccgat cacatcgaaa 2640 tttgcagccc agggagccca gtgggcgatc aagcttcaaa cgaaagggtg gcgcaatctc 2700 agcaaagccc agaagagaga agcgaggtcg cacggcattg ggccttcagc tcccccaccc 2760 gccataccaa aagtcaacag ggttatcatg ggtaacccta ataatagcag acggcgagga 2820 ggtggtgacg gtaatgctca gaagagcatg acgatcacca aacaggagtt ccttgggacc 2880 atattcagct cggacagcat tactacctat ccaattgatc cccgaaacgt caagaccttc 2940 ccccagatca gcgccttagc tttgggttac aataagtaca agataacctc gctccagctc 3000 cgatactcaa ctagggtcac tgaaaccgag gccaacgtta ttatggcttt cacaacggat 3060 tctggtgacc ttcctccgag gagcaaggtg gacatgtaca acattggcac gaagtttgag 3120 gtgctggcgt ctaagccact agtggccaca atccccgtct ccaaagacac gaaatatctg 3180 agagacaagt gttccgacga ttcaaagttg gtagactgtg gtgccctcca ctttatggtg 3240 gatgggaggc actccggaag actcggagaa ttgttcctcc aggtcaccat cgtgctttcc 3300 gaacccactt tctcccaaca aagcactcag attctccggg gtacgacgca aaccggcccc 3360 actcttgtgg aattttccca gagtggcaag tccagcactt acaagttcct agccgtcgga 3420 cgctatgtct ttagcgccta tggtaaggtc ttggtcaagg ctaggcaggt cggcatggat 3480 aaggcaaaac agatgcacac cagcgacgac aaaagcagca acgtcatagc cgaggtggaa 3540 gccttagagc cgggcgccag tatagtatta gactatgtcg aggaggagcc tccttctttt 3600 gtttgtattt cccgtatgta attatttgta tatgttatgt ataattataa tcatgcaatg 3660 gcacatgtag ttcccctaac ctctcagtag gagtcaagcc ctgatgcgcc aacatccaga 3720 agggggtaaa gctgagtcgg tgcaaggaac cttgttagcc ctaagaaaaa cccaaaaaca 3780 gagtgcatag tttagctttt gtgttgtagg agccagagac caaagatcca gacaactggt 3840 gagggcggtc gatggtgcga agtaaattag aaaggggggc gtttacccac gtcctccctt 3900 gccc 3904 //