ID AY038068; SV 2; linear; genomic RNA; STD; VRL; 3865 BP. XX AC AY038068; XX DT 31-JUL-2001 (Rel. 68, Created) DT 13-JAN-2015 (Rel. 123, Last updated, Version 3) XX DE Pelargonium ringspot virus isolate DSMZ-PV0304, complete genome. XX KW . XX OS Pelargonium ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus. XX RN [1] RP 1-3865 RA Kinard G., Guaragna M.A., Jordan R.; RT "Characterization and genome organization of four unique viruses infecting RT geranium and their assignment to a new provisional genus in the RT Tombusviridae family (#VP64.13)"; RL (in) Unknown A. (Eds.); RL XITH INTERNATIONAL CONGRESS OF VIROLOGY:415-415; RL Unknown Publisher (1999) XX RN [2] RP 1-3865 RA Jordan R.; RT ; RL Submitted (05-JAN-2001) to the INSDC. RL Floral & Nursery Plants Research Unit, USDA, ARS, US National Arboretum, RL 10300 Baltimore Ave, Bldg 010A, Room 238, Beltsville, MD 20705, USA XX RN [3] RC Sequence update by submitter RP 1-3865 RA Jordan R.; RT ; RL Submitted (13-MAY-2014) to the INSDC. RL Floral & Nursery Plants Research Unit, USDA, ARS, US National Arboretum, RL 10300 Baltimore Ave, Bldg 010A, Room 238, Beltsville, MD 20705, USA XX DR MD5; d36778a8a1542f99be84ac204a7040ae. XX CC On May 13, 2014 this sequence version replaced gi:15010536. XX FH Key Location/Qualifiers FH FT source 1..3865 FT /organism="Pelargonium ringspot virus" FT /host="Pelargonium sp." FT /lab_host="Chenopodium quinoa" FT /isolate="DSMZ-PV0304" FT /mol_type="genomic RNA" FT /note="acronym: PelRSV" FT /db_xref="taxon:167020" FT 5'UTR 1..14 FT gene 15..2303 FT /gene="p87" FT CDS 15..2303 FT /codon_start=1 FT /transl_except=(pos:723..725,aa:OTHER) FT /gene="p87" FT /product="RNA-dependent RNA-polymerase" FT /note="readthrough protein of p27" FT /db_xref="GOA:A0A0B4MJK9" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A0A0B4MJK9" FT /protein_id="AHZ59473.1" FT /translation="MTDVVKFGVWAGFYLAKELALLGPELASITLSSLTPNYNGLLTSI FT GLPTVSSIPTASPPIDLVLVNDGVLNTPNLELEGELVPLLEEVITDPKTGTITKAVKTR FT RPKSKTTFSCILAAETKNHFGGLPRATRANELSVMKHLVNRCKECKLTALQTREVSAKA FT FSLVFTPDSHDKFIYEFLNSDITFERRCDYLKSQRVDSCWLRLLQNPFGKKRWKAVVCR FT LMGMGVQEAYEFVKXGCLSSTPGVDTKIFRGSHRWVREVREDVPPVPRTLYRVEGLSDD FT QQWGTHNSSFLNLRRGLMERVYFVERQGTLTHCPPPQAGVYKRLFTKVGHKLVGLCGNH FT SPIPRDQYPGMFQGRKKTIYTNAVASLSDMRYNVRDSYLTTFVKCEKINFSKKPDPAPR FT VIQPRTPRYNVELGVYLKPVEHSIYRAIDKVSGEPTVMKGYTVGEMGKIVEDKWNKYLA FT PAAIGFDMSRFDQHVSVDALKYEHKIYRKIFSNDTHLRLLLEHQITNQGVAYARDGRLH FT YKVVGKRMSGDVNTSLGNVILACSISRLLIKELGVKASLINNGDDCVLIGELKDIRKVE FT GILADYWLGFGFTCISEAIVTTLEKIEFCQMSPIYIGNAYKMVRNPRTSLSKDAHSTTP FT FETVKVAREWCHSVGLGGLALTSGVPVVQEFYKCMIRHGVEPRRDKMRHFWGEYWLEFV FT KMHKGGEQPVSEEARHSFHLAFDISPDQQLALEGYYKSLELNMEFSPPSNNLAVVADIE FT WILRNPVAV" FT gene 15..725 FT /gene="p27" FT CDS 15..725 FT /codon_start=1 FT /gene="p27" FT /product="replicase protein" FT /db_xref="UniProtKB/TrEMBL:A0A0B4MK06" FT /protein_id="AHZ59472.1" FT /translation="MTDVVKFGVWAGFYLAKELALLGPELASITLSSLTPNYNGLLTSI FT GLPTVSSIPTASPPIDLVLVNDGVLNTPNLELEGELVPLLEEVITDPKTGTITKAVKTR FT RPKSKTTFSCILAAETKNHFGGLPRATRANELSVMKHLVNRCKECKLTALQTREVSAKA FT FSLVFTPDSHDKFIYEFLNSDITFERRCDYLKSQRVDSCWLRLLQNPFGKKRWKAVVCR FT LMGMGVQEAYEFVK" FT gene 2273..2449 FT /gene="p6" FT CDS 2273..2449 FT /codon_start=1 FT /gene="p6" FT /product="putative movement protein 1" FT /note="MP1" FT /db_xref="GOA:A0A0B4MJG7" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:A0A0B4MJG7" FT /protein_id="AHZ59474.1" FT /translation="MDTQKPSGSLANKEVVRGKPKKLDVAHSGISKGTNSSTTGAVFVT FT VAEKVEFVVTLNF" FT gene 2355..2606 FT /gene="p9" FT CDS 2355..2606 FT /codon_start=1 FT /transl_except=(pos:2355..2357,aa:Met) FT /gene="p9" FT /product="putative movement protein 2" FT /note="MP2; alternative start codon" FT /db_xref="GOA:A0A0B4MJX6" FT /db_xref="UniProtKB/TrEMBL:A0A0B4MJX6" FT /protein_id="AHZ59475.1" FT /translation="MASPKVPIQVLLVLFSLLWLKRWSLSLLSISKPSFDNPSLCISIV FT LGLFFASVLTPGNYSYYYYSANSTSDKFISVAVGNGQQ" FT gene 2593..3609 FT /gene="p37" FT CDS 2593..3609 FT /codon_start=1 FT /gene="p37" FT /product="coat protein" FT /db_xref="GOA:Q911J5" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q911J5" FT /protein_id="AAK74063.1" FT /translation="MASNSPIVLAAANRGEVWAVKLKQSGWKTLSKAQKAAARAQGIGA FT APLSQTVPKTTRIIQGNPTFSRRSRDAPGNAQKSMTIVKSEFLGEVSADGAIHTYTLDP FT RNVRTFPHISDLARGFNKYKFGDLKVRYSAKVQESGCGVCIAFTPDSSDPKPKGKFDLY FT SLGSRAEGAAHRNLLYTVPIDKSQRFLRDCATENSKDVDAGSLFVLVDGQHDGRVGELF FT LEVTIVLSQPTYNQRATQLLAGTTHRDGPTFVKAVKSANTVSLTFQAAGNYLVSTYSSL FT LERVGRLALGEAEQSQVDSSTHSSNVVEALVAAPGGSIVYYFKTPDQMSFRAYVCRM" FT 5'UTR 3610..3865 XX SQ Sequence 3865 BP; 1026 A; 867 C; 1036 G; 936 T; 0 other; tctcaactcg cgttatgact gacgttgtta agtttggggt ttgggcaggg ttttacctgg 60 ccaaggagtt ggcgctcctt ggaccagagt tggccagcat tacactttct agcttgactc 120 cgaattataa tggattgttg acctccattg gactgccaac cgttagttcc ataccgacag 180 catccccccc tatagatttg gttctagtga acgacggtgt actcaacaca cctaacctag 240 agttggaggg tgagcttgtg ccactcttgg aggaagtgat aactgatccg aaaaccggaa 300 cgataacaaa ggcagtgaaa actcggcgac caaagagcaa gaccactttc tcttgcatac 360 tagctgcaga gaccaaaaac cattttggcg ggcttcctag ggcgacaagg gcaaacgagt 420 taagcgtgat gaaacatctg gtcaacaggt gtaaagaatg caagttgact gccctccaaa 480 ctcgggaggt ttcagccaaa gctttttcac tcgtgttcac ccccgactca catgacaagt 540 tcatctacga attcttaaac agtgacataa cgtttgaacg taggtgtgac tacttaaaaa 600 gccagagggt ggattcctgt tggttgagac tgttgcagaa tccctttggg aagaaaaggt 660 ggaaggcagt tgtttgtagg cttatgggca tgggcgtcca ggaggcctac gagtttgtta 720 aataggggtg cctctctagc acacccggtg tggatacaaa gatcttcagg gggtcccacc 780 ggtgggttcg tgaagttaga gaggatgttc ccccagtacc taggacgttg tacagagtag 840 aaggcctcag tgatgaccaa caatggggca ctcacaatag cagtttccta aacttgagga 900 gggggttgat ggagagggta tacttcgtcg aaaggcaagg aacactcact cattgccccc 960 ccccacaagc tggggtttat aaaaggttgt ttacaaaggt tggccacaag ttggtgggat 1020 tgtgcgggaa tcattccccg atccccaggg accagtaccc tgggatgttt cagggcagga 1080 agaagacaat ttacaccaac gcagtggcct ctctttccga catgcggtat aatgttagag 1140 atagttactt gacaactttt gtgaaatgtg agaagattaa ctttagcaag aagcctgatc 1200 cagctcctcg ggtgatacag ccacgcactc cacggtacaa tgttgaactt ggcgtgtatc 1260 tcaagcccgt agagcacagc atatacagag cgattgacaa ggtgtcggga gaaccaaccg 1320 tgatgaaggg ctacactgta ggagagatgg ggaaaatcgt tgaggacaag tggaataagt 1380 acctggcacc tgcagcgata ggttttgaca tgtctagatt tgatcagcat gtgtcagtgg 1440 acgctttgaa gtatgaacac aaaatctacc ggaaaatttt ttcgaacgac acgcacttaa 1500 ggcttttgct tgagcaccag ataaccaatc agggcgtggc gtacgctagg gatggtaggt 1560 tgcattacaa ggtcgtgggg aagcgcatga gtggggacgt gaacacatca ctcggaaacg 1620 tgattcttgc ttgctccata agcagattgc taattaaaga gttgggggtg aaggcatctt 1680 tgatcaacaa tggggacgat tgcgtgctaa taggtgaact caaagacatc aggaaggtgg 1740 agggtatctt ggccgattac tggttgggat ttgggttcac ttgcattagc gaggcaatag 1800 tgacaacatt agaaaagatt gaattttgcc agatgtcgcc aatatatata ggcaacgctt 1860 acaaaatggt caggaatccg cggacgagcc tatctaaaga tgcccatagc actacgccct 1920 ttgaaactgt gaaagtggcg agggagtggt gccactcagt ggggcttggt ggactcgcac 1980 ttacatctgg cgtcccagtt gtccaagaat tctacaagtg tatgatacgt cacggagtgg 2040 agccaaggag ggacaaaatg agacactttt ggggggagta ctggttggag tttgttaaaa 2100 tgcacaaggg gggggagcag ccagtatctg aggaagctcg gcacagtttc cacttggcgt 2160 ttgacatttc tcctgaccaa caacttgccc tggaaggata ctacaaatcc cttgagctaa 2220 acatggagtt ctccccgcca agtaacaatt tggcggttgt tgcagacatt gaatggatac 2280 tcagaaaccc agtggcagtc tagcaaacaa agaagttgtg agaggcaaac ccaagaaact 2340 cgacgtagcg cattctggca tctccaaagg taccaattca agtactactg gtgctgtttt 2400 cgttactgtg gctgaaaagg tggagtttgt cgttactctc aatttctaaa ccatcatttg 2460 acaacccgag cttgtgcata tctattgtgc tcggtctgtt cttcgcatct gtattaacac 2520 caggcaatta tagttattat tattattccg ctaattccac aagtgacaag ttcatctctg 2580 tagctgtggg aaatggccag caatagtccc atagtactgg cggcggctaa ccggggtgaa 2640 gtttgggcgg tcaagctgaa gcaatctggg tggaagacgc ttagcaaggc tcagaaggca 2700 gctgctcgtg ctcaaggcat aggagctgcc ccattgagcc agactgtgcc gaagaccacc 2760 aggattatac aaggaaaccc aaccttctcc cgtcgatccc gagatgctcc cgggaacgct 2820 cagaaatcca tgaccatcgt gaagtctgag tttcttggag aggtttcggc agatggggca 2880 atccacactt acacacttga tccccgcaac gttcgaacct ttccccatat ctccgacctg 2940 gctcgtgggt tcaacaagta caagtttggg gacttgaaag tacgatatag cgccaaggtc 3000 caggagtctg gctgtggcgt ttgtattgct ttcaccccgg attcatctga ccccaagccg 3060 aaaggtaaat tcgatttata ctcacttgga agtagggctg aaggggccgc tcatcgaaac 3120 ctgctataca cagtcccaat tgacaaatct caaagattct tgagagactg tgcgaccgaa 3180 aattcaaaag acgtggacgc tggtagtttg tttgtgttgg tggatggcca gcacgatggg 3240 cgagtcgggg aactcttcct cgaagtgacc attgtgttga gccagcccac gtacaaccag 3300 cgggccacac aacttttggc aggtaccaca cacagagacg gaccgacttt tgtgaaggca 3360 gtgaaaagcg ctaataccgt ctcgttaact ttccaggcag ctggtaacta cctggttagc 3420 acgtatagct ctctgctgga acgggttggt cggctcgcgt tgggcgaggc agaacaatca 3480 caggtggatt cgtccacaca cagtagcaat gtagtagaag ctctagttgc cgcacctggc 3540 ggaagtattg tatattactt taagacccct gatcagatgt cgttcagggc ttatgtttgc 3600 cgtatgtgaa tggtgggatg ggggggtttt ggtaatcatt agggctacag gacaaccgag 3660 gaggcgccaa ccttcgacca tcggtgatcc cctattgcac tccagccacc cattgttacc 3720 ttcactaggc accacttaag aaaaatccaa aaacagagtg ttaggagtag gcatagctac 3780 accggaacct aaaatccctt cggggtgggc tggaaccggg cctgtaatga attgggggga 3840 gggttcccat cccctttaat gcccc 3865 //