ID AY038066; SV 2; linear; genomic RNA; STD; VRL; 3892 BP. XX AC AY038066; XX DT 31-JUL-2001 (Rel. 68, Created) DT 13-JAN-2015 (Rel. 123, Last updated, Version 3) XX DE Elderberry latent virus isolate ELV, complete genome. XX KW . XX OS Elderberry latent virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus. XX RN [1] RP 1-3892 RA Kinard G., Guaragna M.A., Jordan R.; RT "Characterization and genome organization of four unique viruses infecting RT geranium and their assignment to a new provisional genus in the RT Tombusviridae family (#VP64.13)"; RL (in) Unknown A. (Eds.); RL XITH INTERNATIONAL CONGRESS OF VIROLOGY:415-415; RL Unknown Publisher (1999) XX RN [2] RP 1-3892 RA Jordan R.; RT ; RL Submitted (05-JAN-2001) to the INSDC. RL Floral & Nursery Plants Research Unit, USDA, ARS, US National Arboretum, RL 10300 Baltimore Ave, Bldg 010A, Room 238, Beltsville, MD 20705, USA XX RN [3] RC Sequence update by submitter RP 1-3892 RA Jordan R.; RT ; RL Submitted (13-MAY-2014) to the INSDC. RL Floral & Nursery Plants Research Unit, USDA, ARS, US National Arboretum, RL 10300 Baltimore Ave, Bldg 010A, Room 238, Beltsville, MD 20705, USA XX DR MD5; d80052341e714f930ea4ca592d2727c1. XX CC On May 13, 2014 this sequence version replaced gi:15010532. XX FH Key Location/Qualifiers FH FT source 1..3892 FT /organism="Elderberry latent virus" FT /lab_host="Chenopodium quinoa" FT /isolate="ELV" FT /mol_type="genomic RNA" FT /db_xref="taxon:167018" FT /culture_collection="ATCC:PV522" FT 5'UTR 1..42 FT gene 43..2331 FT /gene="p87" FT CDS 43..2331 FT /codon_start=1 FT /transl_except=(pos:760..762,aa:OTHER) FT /gene="p87" FT /product="RNA-dependent RNA-polymerase" FT /note="readthrough protein of p27" FT /db_xref="GOA:A0A0B4MJG2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A0A0B4MJG2" FT /protein_id="AHZ59463.1" FT /translation="MGLITQCIWFGAYVGFKVTKELALLGPELTSITLSCGFPEINPVL FT AAIGLPTVDYIPEVNQVDVLMATNDAILHTPDVELETELEDSRVLTIAEPETSRVTTVV FT KTRRPKNRRTFACVLAAEAKNHFGGMPRNSRANELSVMKYLVGKCQDHKLTALQTREVA FT AQAFALTFTPDANDKFIYTFLNSEDAYDRRCDYVKSQGVDPMWLRLLKRPFSRKEWKQV FT VCKFMGFGTREAYTFIKXGCLSQSPGVDTKIERGMHRWVREMRWEGTPNPRSLFRLEGL FT SDNQCWGTHNSSFRNLRRGLMERVYFVERNGQLVDCPQPLPGAFARLFTKVGHRLAGLC FT GTHSPIPRDQYPGMFRGRKKTIYSDAVASLNDVPYNIRDSYLKTFVKCEKINFSKKPDP FT APRVIQPRSPRYNVELGRYLKPVEHGVYRAIDKLWGEPTVMKGYTVDEMGEIVRTKWEK FT YQKPAALGFDMSRFDQHVSVDALKFEHKIYRRMFSGDENLALLLSHQIHKKGVAYAKDG FT RLSYKVEGKRMSGDVNTSLGNVILACSISRYILGGLKIKASLINNGDDCVLIGDLRDIR FT RVEGILAQAWLDFGFTCISEPIVTTLEKIEFCQMSPVLVGEGYKMVRNPRTSLSKDCHS FT TTPFENTRVAAEWAYSVGLGGLALTSGVPVVQEFYSCLLRNGMKPKKDKMDHFWGEYWM FT EYVRMHNGKHEPVTQESRHSFHLAFDISPDQQLALEEYYRSVDLLMEFAPRSDYLAVVA FT WILEHKIRI" FT gene 43..762 FT /gene="p27" FT CDS 43..762 FT /codon_start=1 FT /gene="p27" FT /product="replicase protein" FT /db_xref="UniProtKB/TrEMBL:A0A0B4MJK7" FT /protein_id="AHZ59462.1" FT /translation="MGLITQCIWFGAYVGFKVTKELALLGPELTSITLSCGFPEINPVL FT AAIGLPTVDYIPEVNQVDVLMATNDAILHTPDVELETELEDSRVLTIAEPETSRVTTVV FT KTRRPKNRRTFACVLAAEAKNHFGGMPRNSRANELSVMKYLVGKCQDHKLTALQTREVA FT AQAFALTFTPDANDKFIYTFLNSEDAYDRRCDYVKSQGVDPMWLRLLKRPFSRKEWKQV FT VCKFMGFGTREAYTFIK" FT gene 2301..2495 FT /gene="p7" FT CDS 2301..2495 FT /codon_start=1 FT /gene="p7" FT /product="putative movement protein 1" FT /note="MP1" FT /db_xref="GOA:A0A0B4MJX5" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:A0A0B4MJX5" FT /protein_id="AHZ59464.1" FT /translation="MDTRAQDKDIDQGKAAALRKIERGKPKKLDVAHSGISKGTHSDTT FT GAVFVTVADQVTFHVTLNF" FT gene 2401..2649 FT /gene="p9" FT CDS 2401..2649 FT /codon_start=1 FT /transl_except=(pos:2401..2403,aa:Met) FT /gene="p9" FT /product="putative movement protein 2" FT /note="MP2; alternative start codon" FT /db_xref="GOA:A0A0B4MJW8" FT /db_xref="UniProtKB/TrEMBL:A0A0B4MJW8" FT /protein_id="AHZ59465.1" FT /translation="MASAREHILTLLVLCLSLLLIKSHFTLPSISRPSFDSPNLLVSIV FT LGLFFASVLTPGNYVYSYYSANSTSDKYISVAVGNGQ" FT gene 2639..3655 FT /gene="p37" FT CDS 2639..3655 FT /codon_start=1 FT /gene="p37" FT /product="coat protein" FT /db_xref="GOA:Q911J7" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q911J7" FT /protein_id="AAK74061.1" FT /translation="MANKSPVVVAAAGRGELWAVKLSSLGWRSLSKAQKASARAAGIGA FT VPQSAIIPRTTRLIAGNPTNSRRTRDAPGNAQKSMTVFKSEFLGELHADNTIRSYKLDP FT RNVRTFPHISDLARGFNKYKFTDVKVRYSSKVQDSECGLTIAFSADSSDPAPRGKFDLY FT ALGSKVEGAAHKNLLYTVPVDKGQRFLRDGEGDNAKEVDAGVIYVLMDGAHDTRAGELF FT LEVTVVLSQPTYNQRSTQYISGTEHRGGPNYVNITKSANTMTLTFQAAGTFLLCSYSSP FT LEKVGRLSLADADQSQVDSANNSSNIIEAVVTTPGGSIVYYFKSREQMSFRAYVGRM" FT 3'UTR 3656..3892 XX SQ Sequence 3892 BP; 965 A; 938 C; 1088 G; 901 T; 0 other; cgcttgacta gtcactaagg gaaaacaccc ccatctacag ctatgggact gatcacacaa 60 tgcatctggt ttggagctta cgttgggttc aaggttacca aggagttggc gctccttggg 120 ccggaactca caagtatcac actgtcttgc gggtttcctg aaatcaaccc agtgctagca 180 gccatagggc tgcccaccgt agactacatc cctgaagtta atcaggttga cgtgttgatg 240 gccacgaatg acgccattct gcacaccccc gacgtcgaat tagagactga gctcgaggac 300 tctagggtcc tcaccattgc tgaaccggag acctcccggg taaccaccgt ggtgaaaact 360 agacggccaa agaacaggcg cactttcgct tgcgtcttgg cagcggaagc aaagaaccac 420 ttcgggggga tgcccaggaa ctctcgggct aacgagctca gcgtcatgaa gtatcttgtg 480 gggaagtgcc aggatcacaa gttgaccgcc ctccagacta gggaggtcgc ggcccaggcg 540 tttgcactga cgttcacccc tgacgccaat gacaagttca tatacacctt ccttaattcg 600 gaagacgctt acgatcgaag gtgtgactat gtcaagagtc agggagtgga cccgatgtgg 660 ctgaggttgt tgaagcggcc ttttagccga aaggagtgga agcaggtggt gtgtaagttc 720 atgggttttg ggacccgtga ggcttacacc tttattaaat aggggtgcct atcgcaatcc 780 cccggtgtgg acacaaagat tgagaggggc atgcaccggt gggttaggga aatgcggtgg 840 gaagggacgc ccaatcctag atcactgttt aggttagagg gcctcagcga caaccaatgt 900 tggggcactc ataatagtag ttttaggaac ctgaggaggg gactgatgga acgtgtctac 960 ttcgttgagc gtaacggcca actagtggac tgtcctcaac cgcttcccgg ggcgtttgcg 1020 cggctattca cgaaggttgg ccatagactt gctggattgt gcggaactca ttccccgatc 1080 cctagggacc agtatcctgg gatgtttcgg ggcaggaaga agacgatcta cagcgatgct 1140 gttgctagct tgaatgatgt gccttataac attagagata gttatttaaa aacctttgtg 1200 aaatgcgaga aaattaactt ctcgaagaaa ccggatcctg ctcccagggt aattcagcct 1260 cggtccccac gctacaatgt agagttgggc cgctacctta aacctgtgga gcatggcgtg 1320 tacagagcga ttgataagtt gtggggggaa cccaccgtca tgaagggata cactgtagat 1380 gagatgggag agatcgttag gactaaatgg gagaaatacc agaagcctgc tgctttagga 1440 ttcgatatgt cgcgatttga tcagcacgtt tctgtggacg ccctgaagtt cgagcacaaa 1500 atttaccggc gcatgtttag tggggatgag aacttagctt tactgctgag ccatcaaatc 1560 cacaaaaagg gcgtcgcgta tgctaaagat ggcagattga gttacaaggt tgagggtaaa 1620 cggatgagtg gggatgtgaa cacatctctt ggaaatgtca tcctcgcgtg ttccattagc 1680 cgctacatac tgggcggatt gaagattaag gcttcgctga tcaacaatgg ggacgattgt 1740 gtgctgatag gtgatttgag ggatatcagg cgggtggagg gtatcttggc ccaagcttgg 1800 ttggacttcg gatttacttg cattagcgaa ccaatcgtca ccactttgga gaaaatcgag 1860 ttttgtcaga tgtccccagt tttggtcggt gagggataca agatggtgcg gaacccgaga 1920 actagcttat ccaaggattg ccatagcacc accccatttg agaacactcg ggtggctgct 1980 gaatgggcct actcagtcgg gctgggcgga ctggcgctaa cctcaggcgt ccctgttgtc 2040 caagaattct acagttgtct cctacgtaac ggaatgaagc ctaagaaaga caagatggac 2100 cacttctggg gtgagtactg gatggagtat gtgagaatgc acaatgggaa gcatgagccg 2160 gtgactcaag agtcccggca cagctttcat ttggccttcg acatttctcc ggatcagcaa 2220 cttgctctgg aagaatacta ccggtccgtc gacttgctta tggagttcgc ccccagaagc 2280 gactacttgg cggtggtcgc atggatacta gagcacaaga taaggatata gaccaaggga 2340 aagcagctgc attgaggaaa atagaacgag gcaaacctaa gaagcttgac gtagcacact 2400 ctggcatcag caagggaaca cattctgaca ctactggtgc tgtgtttgtc actgttgctg 2460 atcaagtcac atttcacgtt accctcaatt tctagacctt ccttcgacag cccaaatctc 2520 ttagtctcca ttgttctagg actatttttc gcttctgttt taacacccgg taattacgtg 2580 tatagttatt actctgcaaa ctcaacgagt gacaagtaca tctcggttgc tgtaggaaat 2640 ggccaataaa agtccagtcg tggttgcagc ggccgggcgc ggtgagctgt gggcagtgaa 2700 actgtcgagt ttggggtggc ggagtctgag caaagcccaa aaggccagcg ctcgggcggc 2760 gggcattggg gctgtgcctc agtccgccat tattccccgc acaactcggt taatagctgg 2820 caaccctacg aactctcgcc gcacccggga cgctcctggc aacgcgcaga agagcatgac 2880 tgtcttcaag tcggagttct taggtgagct ccatgcggac aataccattc ggtcctacaa 2940 gctagacccc cgcaacgtcc gcaccttccc gcacatatcc gacctcgcaa gaggctttaa 3000 caagtacaaa ttcactgatg tgaaggttag gtacagctcg aaggtgcagg actctgagtg 3060 tgggctcacg atcgctttct ccgctgattc cagcgaccca gcacctcgcg gcaagtttga 3120 cttgtacgcc ctggggagca aggtggaggg cgcggcccac aaaaatctcc tttacactgt 3180 cccggttgac aaaggacagc gcttcctgcg tgacggtgag ggagacaacg ccaaggaggt 3240 ggatgctggc gtaatttatg tgctgatgga tggggcacac gacacccgcg cgggggagtt 3300 attcctcgag gtgactgttg tgctgtccca gccaacatac aaccagcgat ccacgcaata 3360 catcagcggc acagagcacc gcggcggacc caactacgtt aacatcacca agagtgcgaa 3420 cactatgacg cttacgttcc aggcggctgg gacgtttctg ctttgtagct attcctctcc 3480 actggagaaa gttgggcgcc tatccttggc ggatgcggac caatcacagg tcgactctgc 3540 gaataatagc agtaatataa tagaggctgt agtaaccacc cctggtggta gtattgtata 3600 ttacttcaag tcccgggaac agatgtcatt ccgggcttac gttggacgca tgtgaaactt 3660 tcttgcatgc ttgtggtgaa caggacagcc gaggggcgcc aaccccgatc gtcggcgaac 3720 ccacaagcgg catggatgag aacgtgccca gcgtaataga aaaatacaaa aaacagagtg 3780 tgtacattct ttctgagtct cgtcggtcga cacgtccccg gaacctaaaa tctctttgag 3840 tgggctggtt ctggatgtca agtttgaaat tagggggggt taacccaagc cc 3892 //