ID   AY037925; SV 1; linear; genomic RNA; STD; VRL; 2677 BP.
XX
AC   AY037925;
XX
DT   05-SEP-2001 (Rel. 69, Created)
DT   05-SEP-2001 (Rel. 69, Last updated, Version 1)
XX
DE   Alfalfa latent carlavirus RpRd gene, partial cds; and TBG1, TBG2, TBG3, and
DE   coat protein genes, complete cds.
XX
KW   .
XX
OS   Alfalfa latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-2677
RA   Cavileer T.D., Larsen R.C., Wyatt S.D., Berger P.H.;
RT   "Molecular evidence establishing the relationship between pea streak virus
RT   and alfalfa latent virus";
RL   Unpublished.
XX
RN   [2]
RP   1-2677
RA   Wyatt S.D., Larsen R.C.;
RT   ;
RL   Submitted (04-JUN-2001) to the INSDC.
RL   Plant Pathology, USDA-ARS, 24106 N Bunn Road, Prosser, WA 99350, USA
XX
DR   MD5; cbf97d95beb829e4dee889eb3221464a.
DR   EuropePMC; PMC4400424; 25883281.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2677
FT                   /organism="Alfalfa latent virus"
FT                   /lab_host="Pisum sativum"
FT                   /isolate="PV264"
FT                   /mol_type="genomic RNA"
FT                   /note="cDNA sequenced synonym: ALV"
FT                   /db_xref="taxon:165250"
FT   CDS             <1..405
FT                   /codon_start=1
FT                   /product="RpRd"
FT                   /note="contains GDD motif"
FT                   /db_xref="GOA:Q913Z9"
FT                   /db_xref="InterPro:IPR001788"
FT                   /db_xref="UniProtKB/TrEMBL:Q913Z9"
FT                   /protein_id="AAK85156.1"
FT                   /translation="AGDDMCASKHLKVTNKFEDFLSKLKLKAKVQFTKNPTFCGWSLLP
FT                   FGIFKKPQLVYERICIAREKKNLHNCIDNYAIELSYAYKRGELAVNAMNEEETDAFYNC
FT                   VRVIIKRSHLLKSDVKDIFLNAKSLMESLN"
FT   CDS             437..1171
FT                   /codon_start=1
FT                   /product="TBG1"
FT                   /note="membrane binding; contains ATP/CTP binding motif
FT                   GAGKTS; associated with cell-to-cell movement"
FT                   /db_xref="GOA:Q913Z8"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q913Z8"
FT                   /protein_id="AAK85157.1"
FT                   /translation="MDVFIKDLIQCGFRRNKVVFDLPIVVLAVPGAGKTSSIRRLLRED
FT                   SRFEAWTFGVPDHHNCSGRFIKGVTESSEPNPDKFLIVDEFQRGDWEKFKPFAIFGDVA
FT                   QLMLKNTASFDSVFSKCASHRFPLSVAKLLQELDFEITSEREGVLQIKDLLGSEPQGVV
FT                   TCFESEVCDLLDYNQVDHKNPTEVIGLEFPIVSLVISGRAVLEVHRAEFYICCTRATDK
FT                   LIIISPEPEQFHRGSNAIDSTS"
FT   CDS             1149..1463
FT                   /codon_start=1
FT                   /product="TBG2"
FT                   /db_xref="GOA:Q913Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q913Z7"
FT                   /protein_id="AAK85158.1"
FT                   /translation="MPLIAPPNNSNSYLALAIGAGFAIIIFTLRSNQLPHVGDNIHSLP
FT                   HGGFYRDGTKVIQYNSPVRTPNNWFKGPNNIQALALVLLVIGLIHASSVKISRGCSCSK
FT                   "
FT   CDS             1445..1645
FT                   /codon_start=1
FT                   /product="TBG3"
FT                   /note="contains TGES motif"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q913Z6"
FT                   /protein_id="AAK85159.1"
FT                   /translation="MQLFQVILSVFSCCAVLLCLYTIDSLFKNSVCQCTVVLTGESVKI
FT                   VGCEFTSEFIEYAKTLKVQAI"
FT   CDS             1682..2566
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="contains conserved TGG motif"
FT                   /db_xref="GOA:Q913Z5"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q913Z5"
FT                   /protein_id="AAK85160.1"
FT                   /translation="MAEQQKAAEERARIDAKLKQQLEQQSSKLGAEKEFIKDAEGLQKS
FT                   LLERFQALQDLTAKSIAGSSIVNGGWEADRKRLKVSDKMKLDGSNIFTRPTLDDLQKLG
FT                   WNPEANQVATAENLAKISAKLKELGVPPEQMARTFWDVAMYCTAVGASRYTNPQGSINY
FT                   PEGSITRDAVFGVIREQCTLRQVCRSFAPIIWNYMHVNNMPPTNWAEKGFNNDVKFAAF
FT                   DFFDFVECPASIQPADGLIRRPTSDEYVAFNTPKKCALARADKNGRYASTDASVTGGMF
FT                   GCGAKETWRNNAC"
XX
SQ   Sequence 2677 BP; 754 A; 484 C; 638 G; 801 T; 0 other;
     gctggtgatg atatgtgtgc ctcaaaacat ttgaaggtca ccaacaaatt tgaggatttc        60
     ttgtcaaaac ttaagttgaa ggctaaggtt caatttacca aaaacccgac attctgtggg       120
     tggtcattat tacctttcgg aattttcaag aagccccaat tggtctatga acgcatctgc       180
     attgctagag aaaagaagaa ccttcacaat tgcatagata attacgcaat tgaattgtcg       240
     tatgcttata aaagagggga gttagcagtc aatgctatga atgaagaaga gactgatgct       300
     ttttacaatt gtgtcagggt cataatcaaa aggagccact tgctgaaaag tgatgtcaag       360
     gatatctttc tcaatgcgaa atccctcatg gaaagtctga attaagctta aatcatcgct       420
     agtgtggttt gattagatgg atgttttcat aaaggattta atacagtgtg gttttcgtag       480
     gaataaggtt gtgtttgact tacccatcgt tgttttagct gttccgggtg cgggcaaaac       540
     ttcaagcatt agaaggttat tgcgcgagga ttctagattt gaagcttgga ctttcggagt       600
     tcctgatcat cataattgtt ctggtagatt cattaaaggg gtgactgaga gttctgagcc       660
     taatcctgat aaattcctca ttgtggatga atttcaaaga ggtgattggg aaaaattcaa       720
     accttttgct atcttcggag acgttgcgca attaatgctt aagaatactg cttcctttga       780
     tagcgtgttc tccaagtgtg catcccatag gttccctcta tccgttgcta agttgcttca       840
     ggaattagac ttcgaaatta ccagtgagcg tgaaggtgtt ttgcaaatca aagatcttct       900
     tggttctgag ccgcaaggtg ttgtgacctg ttttgaatct gaagtttgtg atttgctcga       960
     ttacaaccaa gttgatcata aaaaccccac tgaagtcatc ggtttggaat ttccgattgt      1020
     gtctctggtc atctccggta gagcggtttt ggaggttcat agagctgaat tctacatttg      1080
     ctgcacaaga gcgacagata aattaataat catatcacct gagccggagc agttccatag      1140
     aggatccaat gccattgata gcacctccta ataattctaa ttcttatcta gctctggcta      1200
     tcggtgctgg ttttgcaatc atcatcttca cccttagatc caatcaattg cctcacgtgg      1260
     gtgataacat tcattcattg cctcacggag gtttttacag agacgggaca aaggtcatac      1320
     aatataattc ccctgtgagg acgccaaaca actggttcaa gggacctaac aacattcagg      1380
     ctttagccct ggttttgttg gttattggtc tgattcatgc gtcatctgta aagataagtc      1440
     ggggatgcag ttgttccaag taatcctaag tgtgttttcc tgttgtgcgg ttttgttgtg      1500
     cttgtatact atagattcgc tttttaaaaa ttctgtgtgc cagtgcactg tggtgttaac      1560
     tggtgaaagt gtcaaaattg tcgggtgtga atttacaagt gaattcattg agtacgccaa      1620
     aactttaaag gtgcaggcaa tttgagtatc tttaagtttg cagagagtgt attcgataaa      1680
     gatggcagag caacagaaag cagctgagga gagggctcgc atagatgcga agttgaagca      1740
     gcagctggag cagcagagtt ccaaactggg agctgagaaa gagtttatta aggatgctga      1800
     gggtctacaa aaatctttac ttgagcggtt ccaggcctta caagacctca ccgctaaaag      1860
     cattgcaggt tcttccatcg ttaatggtgg ttgggaagcg gatcggaaaa gactcaaagt      1920
     ttctgacaaa atgaagctag atggttccaa cattttcaca aggccaacat tggacgatct      1980
     gcagaagctg ggctggaatc ctgaggccaa ccaggtggct actgctgaga atctggctaa      2040
     aatcagtgcg aaattgaagg aattgggggt cccgcctgaa cagatggcaa ggactttttg      2100
     ggatgtggct atgtattgta ctgctgtggg tgcttccagg tatactaatc cccaaggttc      2160
     tatcaattac cctgaaggtt caataactag agatgcggtc tttggagtca ttcgagagca      2220
     atgcactctc aggcaggttt gcaggagctt cgctcctatc atctggaact acatgcatgt      2280
     taataatatg cccccaacta attgggcgga aaagggtttc aacaatgatg tcaaatttgc      2340
     tgcttttgat ttctttgatt tcgtggagtg cccagcttca attcaaccgg cggatggtct      2400
     gattagacgt cctacatctg atgagtatgt tgcgttcaac actcccaaaa agtgtgccct      2460
     ggccagggct gacaagaatg gtcgttatgc gagtactgat gcctctgtta ctggaggaat      2520
     gttcggttgt ggagccaaag agacttggcg taataatgcg tgctgaatgt gtgtgcggtt      2580
     gctagtaaaa cctaaataat gtataagcta gaacctataa aatcaagtgt gttttaaaat      2640
     atttttaatg cttgtaaaaa aaaaaaaaaa aaaaaaa                               2677
//