ID AY036009; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC AY036009; XX DT 09-JAN-2002 (Rel. 70, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Hollyhock leaf crumple virus-[Cairo] isolate HLCrV hollyhock segment A, DE complete genome. XX KW . XX OS Hollyhock leaf crumple virus-[Cairo] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RA Idris A.M., Hussein M.H., Abdel-Salam A.M., Brown J.K.; RT "Phylogenetic relationships for okra leaf curl- and hollyhock leaf crumple RT begomoviruses and first report of associated satellite DNAs"; RL Arab J. Biotechnol. 5:67-82(2002). XX RN [2] RP 1-2755 RA Idris A.M., Hussein M.H., Abdel-Salam A.M., Brown J.K.; RT ; RL Submitted (17-MAY-2001) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; dd8cd80264aeb820912fb5b5effcff50. DR EuropePMC; PMC2839976; 20178575. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Hollyhock leaf crumple virus-[Cairo]" FT /segment="A" FT /host="hollyhock" FT /isolate="HLCrV hollyhock" FT /mol_type="genomic DNA" FT /country="Egypt:Cairo" FT /db_xref="taxon:223279" FT CDS 139..507 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /note="functions in movement" FT /db_xref="GOA:Q774U2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q774U2" FT /protein_id="AAK64546.1" FT /translation="MWDPLVNDFPATVHGFRCMLAIKYIQAVRSEYDPGSLGFDLLSDL FT IGVLRAGNYVEATGRYHNFHSRLEGTTSSELRQPNAVRCSCPHCPRHKQTPSVVQQTQL FT QEAQNVQNVSEPRCPKGV" FT CDS 299..1075 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="functions in encapsidation" FT /db_xref="GOA:Q8V0I4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8V0I4" FT /protein_id="AAK64547.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPMQSGVRAPTVLVTNKRRAW FT SNRPNYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGTGLTH FT RTGKRFTVKSIYILGKIWMDENIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATIKNDYRDRFQVMRKFSATVTGGPSGMKEQALVRRFFKINSHTVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1072..1473) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein ReN" FT /db_xref="GOA:Q8V0I3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q8V0I3" FT /protein_id="AAK64551.1" FT /translation="MDSRTGEIITAHQAENGVLIWTINNPLFFKTQQEIWTSSSKGKVI FT DIQIRFNHNLRKALGIHICFLNFRIWTISRPPTGLFLTAFRKQVYKYLNTLGVISLNNV FT IRAVNHVLWNVLKTTIEVDSSTYIKFNIY" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="C2" FT /product="transcription activation protein TrAp" FT /db_xref="GOA:Q8V0I2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8V0I2" FT /protein_id="AAK64550.1" FT /translation="MRPSSPSQISCTQVPIKVKHREAKKRAIRRRRIDIPCGCTVYVAF FT TCRDNGFTHRGNHHCASSREWRSYLDNQQSPFFQNPTRNLDEFFERESHRHPDPVQSQP FT QEGIGDSHMFSQLPNLDDFTPSDWSFLNRI" FT CDS complement(1521..2609) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein Rep" FT /db_xref="GOA:Q8V0I1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q8V0I1" FT /protein_id="AAK64548.1" FT /translation="MAPPKRFKINAKNYFLTYPHCSLSLSETLSQLKTLQTPVNKLYIK FT ICRELHENGEPHLHALIQFEGKYQCTNNRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYL FT EKDGDTLEWGEFQIDARSARGGQQTANDAYAAALNSGSKSEALRVIRELAPKDFVLQFH FT NLNSNLDRIFQEPPAPYVSPFLSSSFDQVPEELEEWAAENVVEAAARPSRPISIVIEGE FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEDKNAHLKSWALKNATFITLSNQL FT YSGTNQSQASGGQEESNQETQD" FT CDS complement(2159..2452) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q8V0I0" FT /protein_id="AAK64549.1" FT /translation="MGNLICMPLFNSRESTSARITDSSTWYPQADQHISIRTFRELNQA FT PTSSPIWRRTETPSNGESFRSMQDLQEGDNRPPMTLTPQRLTQEVSQRLLGL" XX SQ Sequence 2755 BP; 723 A; 553 C; 631 G; 848 T; 0 other; accggtgggc gcgaaaaaaa aaagtggtcc ccgccacgtg aacatgtcgc gcgttgctgt 60 ccaatcaaaa cgcgcgctgt acgcattata atttgaaatt tgaaatataa acttggtccc 120 taagtagttg aaattaaaat gtgggatcct ttggtgaatg atttcccggc aaccgtgcac 180 ggttttcggt gtatgttagc tataaaatat attcaggcgg ttaggtccga atacgatccc 240 ggtagtttag ggtttgattt attgtctgat ttaataggtg ttcttcgtgc cgggaattat 300 gtcgaagcga ccggcagata tcataatttc cactcccgcc tcgaaggtac gacgtcgtct 360 gaacttcgac agcccaatgc agtccggtgt tcgtgccccc actgtcctcg tcacaaacaa 420 acgccgagcg tggtccaaca gacccaatta caggaagccc agaatgtaca gaatgtatcg 480 gagcccagat gtcccaaagg ggtgtgaagg tccatgtaag gtccagtcct atgaacagcg 540 tgatgatgtg aagcatactg gtattgttcg ttgtgtttct gatgtgacca agggaactgg 600 gcttacgcat cgtactggta aacggtttac tgtgaagtcc atttacatat tggggaaaat 660 atggatggat gaaaatatca agaagcagaa tcatactaac aatgttatgt ttttcttggt 720 ccgagataga aggccctatg gtaatagtcc tatggatttt ggacaggttt ttaatatgtt 780 tgataatgag cccagtactg ctactataaa gaatgattat cgagatcgtt tccaagtgat 840 gcgtaagttt agtgcaacgg taactggtgg tccttctggg atgaaggaac aggctcttgt 900 tcgtaggttt tttaagatta atagtcatac agtttataat catcaggaag ctgcgaagta 960 tgagaaccat actgagaatg ctttgttgtt gtatatggca tgtactcatg cttctaatcc 1020 tgtgtacgct acgttgaaaa tacgtatcta tttttatgac tctgtatcga attaataaat 1080 attgaatttt atatatgtac ttgaatctac ttcaattgtc gtttttaata cattccataa 1140 tacatgatta actgctctaa ttacattatt aagagaaatt acaccaaggg tattcaaata 1200 tttgtacact tgtttcctaa atgcggttaa gaaaagacca gtcggagggc gtgaaatcgt 1260 ccagattcgg aagttgagaa aacatatgtg aatccccaat gccttcctga ggttgtgatt 1320 gaaccggatc tggatgtcta tgactttccc tttcgaagaa ctcgtccaga tttcttgttg 1380 ggttttgaaa aaaaggggat tgttgattgt ccagataaga acgccattct ctgcttgatg 1440 cgcagtgatg atttcccctg tgcgtgaatc cattgtctct gcacgtgaag gctacgtata 1500 ccgtgcaacc acaagggatg tcaatcctgc gtctcctgat tgctctcttc ttggcctccc 1560 gatgcttgac tttgattggt acctgagtac agctgatttg agagggtgat gaaggtcgca 1620 ttctttaatg cccaggattt gagatgcgcg ttcttgtcct cgtctaaata ctctttatat 1680 gaagaattgg gacctggatt gcagaggaag attgttggga tgcccccttt aatttgaact 1740 ggcttcccgt attttgtgtt gctttgccag tccttttgtg cccccatgaa ctccttaaag 1800 tgtttcagat aatgcgggtc aacatcatct atgacgttat accatgcgtc attactgaac 1860 acctttgggc tcagatcaag atgaccgcac agataattgt gaggcccaag acttctggcc 1920 catacggtct ttcctgttct gctttcccct tcaatcacta tactaatcgg tctacttggc 1980 cgcgcagcgg cctcaacgac gttctccgcc gcccattctt caagttcttc tggaacttgg 2040 tcgaacgaag aagacaaaaa aggagaaaca taaggagctg gaggctcctg aaaaatccta 2100 tctaaattac tatttaaatt atgaaattgt aaaacaaaat ctttgggagc taactccctt 2160 ataaccctaa gagcctctga cttacttcct gagttaagcg ctgcggcgta agcgtcattg 2220 gcggtctgtt gtccccctct tgcagatctt gcatcgatct gaaactctcc ccattcgagg 2280 gtgtctccgt ccttctccag ataggacttg acgtcggagc ttgatttagc tccctgaatg 2340 ttcggatgga aatgtgttga tctgcttggg gataccaggt cgaagaatct gttattcgtg 2400 cactggtact ttccctcgaa ttgaataagg gcatgcagat gaggttcccc attctcgtga 2460 agctctctgc aaattttgat gtataatttg ttaactggtg tttgtagggt tttcaattgg 2520 gaaagggttt ctgataggga aagagaacag tggggataag tgagaaaata atttttggca 2580 tttattttaa aacgttttgg gggagccatt tggtcaatgt acaccgattg acttggattt 2640 catttggtgc ctgcaatcgg tgtaatgggg tacaatatat agttgtacac caaatggcat 2700 tttggtaaaa atcccaataa ttttgaaccc ccatagcgcc caccgttcta atatt 2755 //