ID AY029520; SV 1; linear; genomic RNA; STD; VRL; 4532 BP. XX AC AY029520; XX DT 03-MAY-2002 (Rel. 71, Created) DT 29-AUG-2003 (Rel. 77, Last updated, Version 3) XX DE Fiji disease virus RNA-dependent RNA polymerase gene, complete cds. XX KW . XX OS Fiji disease virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-4532 RX DOI; 10.1023/A:1024403431373. RX PUBMED; 12876456. RA McQualter R.B., Smith G.R., Dale J.L., Harding R.M.; RT "Molecular analysis of Fiji disease Fijivirus genome segments 1 and 3"; RL Virus Genes 26(3):283-289(2003). XX RN [2] RP 1-4532 RA McQualter R.B., Dale J.L., Harding R.M.; RT ; RL Submitted (09-APR-2001) to the INSDC. RL Centre for Molecular Biotechnology, Queensland University of Technology, RL George Street, Brisbane, Qld 4000, Australia XX DR MD5; 12789ec40a98f1a2fec105f08daa07ec. XX FH Key Location/Qualifiers FH FT source 1..4532 FT /organism="Fiji disease virus" FT /segment="1" FT /mol_type="genomic RNA" FT /db_xref="taxon:77698" FT CDS 38..4450 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="putative 170.6 kDa protein" FT /db_xref="GOA:Q8JYK1" FT /db_xref="UniProtKB/Swiss-Prot:Q8JYK1" FT /protein_id="AAK40249.1" FT /translation="MIVRTVCRAKEKCLEKYKNILKYKEQLAKQDQKENETTSNNKDTS FT SSVPKPSNFRKTKVQNQYNRVFSIDEKVAEYEKILNDKVNMIDAIFNKAEKIRDLFIGT FT EPLTKELIKNELQYGAIVLNRASDLILAFADNNEPREPEFVLNTDMIVNDLKPLLHPTR FT IFDYSSFGFDDVNKLAINPKIRYLPNWSINYIRKCIQSFFTSNSNIEVQNLHNYSNHYD FT NRIYEHAMPNDVKLQILIGLDKMFNKLSIQHRFGTFETQILSCFFMKQKICEYEAYMHL FT PDCVNKSKKLKKGTETVCWQYLAEIIKHYEGIPFYHHTHSSKFGALDNTKISITTNKEV FT SCCLPSVMHGLLNGIIGELLCDLSTETALIYAKHLMNCSATSTYQRQLEFKDSFRMWPK FT LCYDSIGYALAVLYSKDMKPLEHRVEKIDSEFWFDEEEKDKLSSSLSKIPSYMKPFVNN FT AIQNCKKRGDYINQMICDINKIKLSREPNKFETHDLYLESGKNTEYLRWLTMTSTIISN FT FGIYNKTSLLLEYEKSISTKTKVMVQQPEPKVSLITEQGLQTPILHDWTKVPVLNEMSS FT LFDSEWKSTLVKEFEDINDFEKRFVTFLTNKSGGIKSEEPTLSKELKGISNARIIAFAL FT NRNDYQIESKFLNMLIAHGKCAIRFQIDRRARVIVIVPNAIQSSELFLLLGFNVLKSDK FT RFNEKIAVGKQIGNLLDAKAQMISSGDVLSVKNSSDMKGMDAHTLPNLTLFLRRKMIEV FT LYELDPTGKCARYFFAEDKEYCLIQHHEKYHEQFVRRLRGPTIHAAKCLYYMFSMNMYL FT EDNFFSKGMNVSDQTFQSGFFATSAQHTLFLSLYLLNNERKYFSKLDNRMIRLLHSVMG FT DDVFEVIVNGVKYPNLVKEWLKLRNQGLSKINYEEDVSLSRLFGVFLQQAAILGVYVPY FT PARMSLFCDERSDTTKRHTLDMIKIVLEVLSSKSQRSYAIDNNISIGYAIWNCHRTSRY FT LYTDRDKSLIRRLVDHDANLDKLFVIDLSKFENSVRLVYPFVTIMTSPISWPMLYFAHF FT KIDDPNCTILTYRAKSPTSLNGDGAFLLINQMFFTSDEEHMFKFVEFVKHQDKVVRLKL FT SSDFLDWKERHTWGFTLGEHLLRFKRLRHLTESRKSELGLGEIEVMVHNLNKYLDSHRV FT QMSLDSFDQLRKNKITVPSSLMYVNHNRAKIEQSLTVRTETLDERASLDSTFLRHVFSY FT SIVPKDIEVLKTHALCAIKVRTYSDLKYALSVDGYLPESDDSSFNVILPFLPGYHQSSS FT YGRLFRYTTLPTVHDRDISGTMGEIVGGLGASFDIDSAIEFGAYVYNINRNLINAAASA FT IGIPQKFVSKYEQLVQAFIMNNFNLKYHSIFHNAKYFGLSGSLKKFSEYGGYSNKLIRF FT DTINKMEKFHNAFTRDLVFAYIDELNGRRVYLDYSIHSLLLIMSRGSIKYFTTHLYKLF FT NPLLSLELD" XX SQ Sequence 4532 BP; 1591 A; 641 C; 787 G; 1513 T; 0 other; aagttttttc ctgccgaccc acgtatcaaa aggaacaatg atcgtacgaa ccgtttgtcg 60 agcaaaagag aaatgcctag aaaaatacaa gaacatacta aaatacaaag aacaactagc 120 aaaacaagat caaaaagaaa acgaaactac ctcaaataat aaagacacat catcttcagt 180 cccaaaaccc tcaaatttta gaaagacaaa agtgcagaat caatacaacc gcgttttttc 240 aatagacgag aaagttgctg agtatgaaaa aattcttaat gataaagtta acatgattga 300 tgccattttc aataaagcag aaaagatccg ggatttattc atcggaacag aacctttgac 360 taaagaacta ataaaaaacg aattgcaata tggagctatt gttttaaata gagcgagcga 420 tttaattttg gcttttgccg ataacaacga gccacgtgaa cccgaatttg tgcttaatac 480 agatatgatt gttaatgatt taaagccatt gctacatcct accagaatat ttgattattc 540 tagttttgga tttgatgacg taaacaagtt agctattaat cctaaaataa gatatttgcc 600 taattggagc attaattata tccgcaaatg catacagtca tttttcactt caaacagtaa 660 tatcgaagtt caaaatcttc ataattacag caatcattat gataacagaa tttacgaaca 720 tgcaatgcct aatgacgtta aattacaaat tttaattgga ttggacaaaa tgtttaacaa 780 gttaagtatc caacacagat ttggtacatt tgaaacacaa atcttaagtt gtttttttat 840 gaagcaaaag atctgcgagt atgaagccta tatgcattta cctgattgtg tcaataaaag 900 caaaaaattg aagaaaggta ccgaaacagt atgttggcaa tatttagctg aaattatcaa 960 acattacgaa ggaataccat tttatcatca cactcatagt agtaaatttg gtgcgctgga 1020 taatacaaag attagtatta cgacaaataa ggaagtatct tgttgtttac ctagtgttat 1080 gcatggatta ttaaatggta taattggaga attgttatgt gatttatcaa ccgagactgc 1140 tttaatttat gctaagcatt tgatgaattg ttcagctact tcaacctacc aacgtcaact 1200 tgaatttaaa gatagtttta gaatgtggcc gaaattatgt tatgatagta ttggttatgc 1260 cttagcagtg ttgtattcta aagatatgaa gccgttggaa catagagttg aaaaaattga 1320 ttctgaattt tggtttgatg aagaggagaa agataaatta tcgtctagtt taagtaagat 1380 cccgtcttat atgaaaccct ttgttaacaa tgcaattcaa aactgtaaaa agagaggtga 1440 ctatattaac caaatgatct gtgatatcaa taaaattaaa ttaagcagag aacctaacaa 1500 atttgaaact catgatctat atttagaaag tggtaaaaac acggaatatt taagatggct 1560 aacaatgact agcactatta tttcaaattt tggaatatat aacaaaactt cattattatt 1620 agaatatgaa aagtcaatta gtactaagac taaagtaatg gtacaacagc ccgaaccaaa 1680 agttagtttg ataacagaac aaggtttgca gactcctatt ttacatgatt ggactaaagt 1740 tcctgtattg aatgaaatgt catcattgtt tgattcagag tggaagagta cgttagttaa 1800 agagtttgaa gatattaatg attttgaaaa acgttttgtt acatttttga cgaataaatc 1860 aggtggtatt aaaagtgaag aaccgacatt atcaaaagag ttaaaaggta tttcaaatgc 1920 ccgaatcata gcattcgctt taaatcgtaa tgattatcaa attgaatcaa agtttttaaa 1980 catgctgata gcccatggaa aatgtgcaat aaggtttcaa atagatagaa gagctcgtgt 2040 tatagtgatt gtgcccaatg cgattcaatc aagtgaatta tttttattat taggatttaa 2100 tgtactaaag tcagataaaa ggtttaatga aaagattgct gttggcaaac agattggtaa 2160 tttattagac gctaaagctc aaatgatttc atcaggagat gttctttctg ttaaaaactc 2220 ttcagatatg aaaggtatgg atgcccatac tctacctaat ttaactttgt ttttacgacg 2280 taaaatgatt gaagtattat atgaacttga ccctacaggc aaatgtgcta gatatttctt 2340 cgctgaagat aaagaatact gtttaattca acatcacgaa aaataccatg aacaattcgt 2400 tagacgtttg cgaggtccaa ccattcatgc ggcaaaatgt ttatattata tgttttccat 2460 gaatatgtat ttagaggaca attttttctc taaaggaatg aacgtttcag atcaaacttt 2520 tcaatcaggt ttttttgcta cttcagctca acatactctt tttttaagct tgtatttact 2580 taataatgaa agaaaatact tttcaaagtt agataataga atgattcgat tgctacattc 2640 agtgatggga gacgacgttt ttgaagtaat tgttaatggt gtaaaatatc caaatttggt 2700 aaaagaatgg ttaaaattaa ggaaccaagg gttatctaaa ataaattatg aagaagatgt 2760 ttctttatca agattgtttg gtgtgtttct acaacaagct gcaattttag gagtttatgt 2820 accttatcct gctagaatgt ctctgttttg tgacgaacgt tcggatacca ctaaacgtca 2880 taccttagat atgattaaga tagtacttga agttttgagt tctaaatctc aacgatccta 2940 cgctattgat aataatattt ctattggtta tgcaatctgg aattgtcata gaacatcacg 3000 ttatttatat actgatcggg ataaaagttt aattcgacgt ttggttgatc atgatgctaa 3060 tttagataag ttatttgtaa ttgatttaag taaatttgaa aattcagtcc gtttggtgta 3120 tcctttcgta acgataatga cctcccctat ttcctggcct atgttatatt ttgctcattt 3180 taaaattgac gatcctaact gtactatatt aacttatcga gccaaaagcc caacgagttt 3240 aaatggagat ggcgctttct tgcttatcaa tcagatgttt tttactagcg atgaagaaca 3300 catgtttaag tttgtagaat ttgttaaaca ccaagataag gtggtgcgtt taaaattaag 3360 ttcggatttt ctagattgga aagaacgtca tacatgggga tttacattag gtgagcattt 3420 actgcgtttc aaaaggttaa gacatttaac tgaaagtcgt aaatcggaat taggtttagg 3480 tgagattgaa gttatggttc ataatttgaa taaatatctt gatagtcata gagttcaaat 3540 gtcattagat agttttgatc agttaaggaa aaataaaata acagtccctt ctagtttaat 3600 gtatgtcaac cataatagag ctaaaattga acaatctctg actgtacgaa ccgagacttt 3660 agatgaacgt gcctctttag attcaacgtt tttacgacat gtattctcct actctatagt 3720 accaaaagac attgaagtat taaaaactca tgctttgtgt gcgattaaag ttagaacata 3780 ttctgattta aaatatgctt tatcagtgga tggatatctt cctgaaagtg acgattcaag 3840 ttttaatgta attttacctt ttttacctgg ttatcatcaa agcagctcat acggccgatt 3900 atttagatat actacattac caactgtaca tgatcgtgat atttcaggta caatgggaga 3960 aatagtaggt ggattaggag cgtcttttga catcgattca gctattgaat ttggagctta 4020 tgtttataac attaatcgta atttaattaa tgcggctgcc tccgcaattg gcatacctca 4080 aaaatttgtc agtaaatatg aacagttggt acaagctttc attatgaata actttaacct 4140 taagtatcat tcaatattcc ataacgctaa atattttggt ttaagtggta gtttaaagaa 4200 gttttctgaa tatggtggct attcaaataa attaataaga tttgatacta ttaataaaat 4260 ggaaaaattt cataacgctt ttactcgtga ccttgttttt gcatatattg atgaattgaa 4320 tggacgtagg gtgtatttag attatagtat acatagttta ctgttgatta tgtctagagg 4380 atcaattaaa tattttacta ctcatttata taaattattt aacccactgc tttctcttga 4440 gcttgattaa acaatgtgta cggagttgga cctgattaca tataccgtgc tatggattta 4500 tccagtgtcg aaggcggaaa ccagctagcg tc 4532 //