ID   AY007728; SV 3; linear; genomic RNA; STD; VRL; 1552 BP.
XX
AC   AY007728;
XX
DT   25-OCT-2000 (Rel. 65, Created)
DT   21-NOV-2016 (Rel. 131, Last updated, Version 5)
XX
DE   Potato latent virus 12K protein gene, partial cds; and 7K protein, coat
DE   protein (CP), and nucleotide binding protein (NB) genes, complete cds.
XX
KW   .
XX
OS   Potato latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1552
RX   DOI; 10.1046/j.1365-3059.2002.00729.x.
RX   AGRICOLA; IND23296156.
RA   Brattey C., Badge J.L., Burns R., Foster G.D., George E., Goodfellow H.A.,
RA   Mulholland V., McDonald J.G., Jefferies C.J.;
RT   "Potato latent virus: a proposed new species in the genus Carlavirus";
RL   Plant Pathol. 51(4):495-505(2002).
XX
RN   [2]
RP   1-1552
RA   Badge J.L., Foster G.D.;
RT   ;
RL   Submitted (07-SEP-2000) to the INSDC.
RL   Diagnostics & Molecular Biology, Scottish Agricultural Science Agency,
RL   Craigs Road, Edinburgh EH12 8NJ, UK
XX
RN   [3]
RC   Sequence update by submitter
RP   1-1552
RA   Badge J.L., Foster G.D.;
RT   ;
RL   Submitted (25-APR-2006) to the INSDC.
RL   Diagnostics & Molecular Biology, Scottish Agricultural Science Agency,
RL   Craigs Road, Edinburgh EH12 8NJ, UK
XX
RN   [4]
RC   Sequence update by database staff to remove vector contamination
RP   1-1552
RA   Badge J.L., Foster G.D.;
RT   ;
RL   Submitted (18-NOV-2016) to the INSDC.
RL   Diagnostics & Molecular Biology, Scottish Agricultural Science Agency,
RL   Craigs Road, Edinburgh EH12 8NJ, UK
XX
DR   MD5; 51ea35876ae1791fba6003e9808e76ff.
XX
CC   On Nov 18, 2016 this sequence version replaced gi:93280031.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1552
FT                   /organism="Potato latent virus"
FT                   /host="Solanum tuberosum cv. Red La Soda"
FT                   /mol_type="genomic RNA"
FT                   /note="isolated during quarantine screening"
FT                   /db_xref="taxon:138982"
FT   CDS             <1..105
FT                   /codon_start=1
FT                   /product="12K protein"
FT                   /db_xref="GOA:Q1M2R5"
FT                   /db_xref="UniProtKB/TrEMBL:Q1M2R5"
FT                   /protein_id="ABF06659.2"
FT                   /translation="GGGGQPWAIVIVLIAVIILLSRFNSTCAHCGRCH"
FT   CDS             96..293
FT                   /codon_start=1
FT                   /product="7K protein"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q1M2R4"
FT                   /protein_id="ABF06658.1"
FT                   /translation="MSLTAIYLAIGLLVFSVSVYLIQPNLQDSCSIVITGESVRILNCR
FT                   VTEALLRFALEAEPKSVKIP"
FT   gene            316..1188
FT                   /gene="CP"
FT   CDS             316..1188
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q9DX56"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q9DX56"
FT                   /protein_id="AAG23710.2"
FT                   /translation="MDQKGKQSESSSQAVAPVPKPPLPPPIRGEEAVNEGNEEAKMERR
FT                   LALLHQRLKGERNGTRITNPSFEIGRPSLTRPDDMRRDPANIFSRLSIDDLAQIKPTPV
FT                   SNNMANSEEMVKIAVAVEGLGVPTEQVANVVLQAVIYCASASSSVYLDPHGTIEYTGGA
FT                   VVRDSVVAIIKRDAGLRRVCRLFAPLVWNHMLVHNSPPSDWAAMGFQWNDRFAAFDFFD
FT                   YVENEAAIQPLDGLIRRPTRSEKIAHNTHKRLALDKSNRDEVFASLETEITGGKRGPEI
FT                   SRNFRNAAN"
FT   gene            1175..1474
FT                   /gene="NB"
FT   CDS             1175..1474
FT                   /codon_start=1
FT                   /gene="NB"
FT                   /product="nucleotide binding protein"
FT                   /db_xref="GOA:Q9DX55"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:Q9DX55"
FT                   /protein_id="AAG23711.1"
FT                   /translation="MQPISHYEAKLLAVSLAMYKFTGRCEPAVALNIVNKACNVGMGKS
FT                   SFARRARAALLGRCHRCFRTSMATRCNGVTCYPGIGAKPKIEMFIKYGVSELKP"
XX
SQ   Sequence 1552 BP; 404 A; 319 C; 430 G; 399 T; 0 other;
     gggggggggg gtcaaccttg ggccattgtt atcgtgctga tagcggtaat catattgttg        60
     agtcgattca actccacttg cgcacactgc ggtagatgtc attgaccgca atttatttag       120
     ccattggtct gctagtcttc agcgtgtctg tgtatttaat tcagccaaat ctgcaggatt       180
     cgtgctcgat cgtgattact ggggaaagtg tgcgaattct caattgcagg gtgactgagg       240
     ccctacttcg atttgcactg gaggcagagc ccaagagcgt gaagatccct taggtttact       300
     gggtttgatt tgaatatgga tcagaaagga aaacaaagtg agagttcaag tcaagctgtg       360
     gcccctgttc caaaaccacc gctgccccct ccgatcaggg gcgaagaggc ggttaacgaa       420
     ggcaatgagg aggcgaagat ggagcgacgc ctggctctct tgcatcagcg cttgaagggt       480
     gagcggaatg gcacacgcat taccaatccg agctttgaaa taggaaggcc cagtctgacg       540
     aggcctgatg atatgaggag ggatcccgcc aacatattca gtaggttgtc catcgatgat       600
     ctggcgcaga tcaagccaac acctgtgtcc aacaacatgg ctaactcgga ggaaatggtc       660
     aagatcgctg tcgctgtgga agggctgggt gtacccactg aacaagttgc aaatgttgta       720
     ctgcaggcgg tgatttactg tgctagtgca agtagctccg tgtatctgga tccacatggt       780
     acaattgagt acacaggggg agcagtcgtt cgtgattctg ttgtagccat catcaaaagg       840
     gatgccgggt tgaggagggt gtgtcggctt tttgcgccgt tggtctggaa tcacatgttg       900
     gtgcacaact cacctccctc tgattgggct gctatgggct tccaatggaa tgacagattt       960
     gcagccttcg actttttcga ctatgttgaa aatgaagctg cgatacagcc gttggatggg      1020
     ttgattcgga ggcccacaag gtctgaaaag attgcgcaca acacacacaa gcgacttgca      1080
     ctagacaaat cgaataggga tgaagtgttc gcaagtttgg aaaccgaaat cacaggtggg      1140
     aaaagaggac cagaaatcag caggaatttc cgaaatgcag ccaattagcc actatgaagc      1200
     caagctccta gccgtgtctt tagctatgta taagtttacg ggacgttgtg agcccgctgt      1260
     tgctttaaat attgttaata aagcttgtaa tgttggtatg ggcaagagca gcttcgcgcg      1320
     cagggctagg gcggctctcc tggggcgttg tcatagatgc tttaggactt ccatggccac      1380
     acgttgcaat ggtgtgactt gttatccggg cattggagct aagccaaaaa tcgagatgtt      1440
     catcaaatac ggtgtaagtg agctgaaacc gtaattgagt tgtgcataaa acctaattaa      1500
     ttttaagtgt gcaactataa aataaataaa gttttaaata tttttcctta ga              1552
//