ID AM990928; SV 1; linear; genomic RNA; STD; VRL; 4547 BP. XX AC AM990928; XX DT 30-SEP-2008 (Rel. 97, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 2) XX DE Imperata yellow mottle virus ORF1, ORF2a, ORF2b and ORF4, genomic RNA XX KW . XX OS Imperata yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4547 RA Sereme D.; RT ; RL Submitted (25-APR-2008) to the INSDC. RL Sereme D., Production Vegetale, Inera, BP 476 Ouagadougou 01, 01, BURKINA RL FASO. XX RN [2] RX DOI; 10.1007/s00705-008-0190-y. RX PUBMED; 18777157. RA Sereme D., Lacombe S., Konate M., Pinel-Galzi A., Traore V.S., Hebrard E., RA Traore O., Brugidou C., Fargette D., Konate G.; RT "Biological and molecular characterization of a putative new sobemovirus RT infecting Imperata cylindrica and maize in Africa"; RL Arch. Virol. 153(10):1813-1820(2008). XX DR MD5; 91e4e53c6825df32ccfc1000913eb6b8. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4547 FT /organism="Imperata yellow mottle virus" FT /host="Imperata cylindrica" FT /lab_host="Rottboellia exaltata" FT /mol_type="genomic RNA" FT /country="Burkina Faso:South West Burkina Faso" FT /isolation_source="leaves of Rottboellia exaltata" FT /collection_date="2000" FT /identified_by="Drissa Sereme" FT /db_xref="taxon:524023" FT CDS 45..686 FT /transl_table=1 FT /product="P1" FT /function="putative roles in suppression of gene silencing FT and viral movement" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:B5WYM5" FT /protein_id="CAQ48411.1" FT /translation="MTRTEITLRATSSTRKAARRHSRDGTRKAARRHSRDGTLVWAVHS FT HEIDDPVITAPYVPGIFSQLTLVVLCHTPGCHSIIESTSVQIEHFRLLSDIYRARACES FT YSICESCRQNSPRVRSPRAPYSSLSEGNTRQDSGSVEKWVRDTEYLESRVCGGGNPYHY FT CSHCYPPNTSVYSRVVNNSDSRPSDIDETTGEEFYPRFSRLSVQDRSDSD" FT CDS 713..2509 FT /transl_table=1 FT /product="Protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:B5WYM6" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:B5WYM6" FT /protein_id="CAQ48412.1" FT /translation="MASFVAGQLRKGMRMMHLPGHIFLLLGIWLAGLCSDQLPVTSWWW FT AIPLTIIVNWIASQAAEDFNRLCAGLKPEPLAKRKFGSMGNPRFDPQVGYVVDVSHGSD FT VVTVPLPFSLLSGVAGSALYRKTVTEAYAGGSMPTPVAPDKLPGCVVTLYHGETFLGFG FT SRVRTPNGQDLLMTNHHIALLEPNAIAKGGDMVECDFGPMKYACHDQRMDCCFYNVSPK FT IWSLLKVSSAPLKPMLRPMACNLFGGVSSTSISTSLAFVRPESNPWFLQHNATTGRGWS FT GTPLIHKGAVYGLHIGALGSVNVASNPALYFLTYRREVEVESPELWKSVPNEITNEEYE FT SRRSQGIHFYELDFGGDRIKVSDREWVRHSARRAQKTKQLEGGRDWGDVEDDEEWEVTV FT EAAVSVPPVIGEPPTPSLQSASSLQSLHTAPTRKTRRRRKPTATVQVEGEPLNYQRADL FT LRESPPLEGLFSLGTTNGSTDSFSQPPSPVCPSQQLEEVIAGLGKELRSLRDLVSQQRL FT EFSQNLQTMRGQLEDLKQNSNLSESKQAGSSARYRPPHSRKQSTPSKDDTQTAKSGNVS FT DKSRGTSKRYVKKSNGSAKQES" FT CDS 2176..3768 FT /transl_table=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:B5WYM7" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B5WYM7" FT /protein_id="CAQ48413.1" FT /translation="MPLTAVGRSDCRFREGTQKPPGPRVSAAVRVFPELADYAWPARGS FT EAELESLRVQASRFKRTLPPPSLQEAVNALQGRYPNSQVRKCFRQEPWDFQALCEEVQR FT ICQTGELNGTSSPGVPLANIENQNAAVLNLAPELVHLAVAERLVALAAVDPRQHNWTPK FT ELVQRGLVDPVRLFVKQEPHTMRKIRERRFRLISSVSLVDQLVERMLFGPQNATEISMW FT HLCPSKPGMGMSTPSQVEMLWKDVAHKHSLHQAAEADISAFDWSVQDWELWADLAIRLQ FT LGSFPDLMRRAAISRFYCFMNSVFQLSDGTLIEQNLPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWVEGAQEKYAALGHTCKEYVACPSKQGRLGKELLSFNFCSH FT EFTNPGLPRAELLTWAKCLYRFLSSNRETVDDLWVELNTSRQWGRIQKYLAGIGEVSQL FT NSADGEIKAEEIQEDAAGCGGQEPAASAFEEAREIWIEPTPAQQWDNNIGPHGYEWDWP FT FSESWSPWGRDHS" FT CDS 3560..4381 FT /transl_table=1 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:B5WYM8" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B5WYM8" FT /protein_id="CAQ48414.1" FT /translation="MGRSKQKKSKRMPQAAAVKNQQPAPSRRQGRSGSSQRQPSNGITT FT SAPMATSGIGPSRSLGPLGGAITVEEVEHLGAFTRGTTAAGQTRAYLCMPSSLIRLSNI FT ARCFARWRPLQWSVFYVPEVGTQTNGAIQMAYLYDYGDSLPTTTGQISACSGFLTAAVW FT CGAAGAQLLSGKAPRSQNLVIAHMDCRRSEWMRVVDGLTDTDPAHVVNTYLPARAVVRS FT SLLPSTEDTPGQLYVRYRIMLRDAVAPGLNDASSSAPSVDQERKGNAAVVS" XX SQ Sequence 4547 BP; 1040 A; 1208 C; 1234 G; 1065 T; 0 other; gattttgagc ctacttccac ctataacacc ctacctggcc ttgtatgacc cgtactgaga 60 tcactctccg ggccacatca agcaccagga aggccgctcg acgtcatagt agggacggga 120 ccaggaaggc cgctcgacgt catagtaggg acgggacact cgtctgggct gtgcattcgc 180 acgagatcga cgaccccgtc attactgcgc cttacgtccc cggcatcttc agccagttga 240 ctctggttgt gttgtgccat actccgggtt gccattcgat cattgagtct acctcagtgc 300 agatcgagca tttccggttg ttgtccgata tctatagggc gagagcctgc gagtcgtact 360 ccatttgtga gtcctgcagg cagaactctc ctagagttcg ctcaccccgt gctccctatt 420 cctctttgag tgaagggaac actagacaag attcgggctc agtggagaag tgggtgcgcg 480 acaccgagta tctcgagtca cgagtttgcg gtggtggtaa cccttatcat tactgctctc 540 attgctaccc tccgaatact tctgtctatt caagagtggt caataactct gactctcggc 600 catcggacat agacgagacg actggtgagg agttctatcc ccggttttcc agactatctg 660 tccaggatag gtcggactcg gactgagcgg tcgggctttc gcgtcacgcg acatggcctc 720 ttttgttgct ggtcagctac ggaaggggat gcggatgatg caccttccag gtcacatctt 780 cctccttcta ggcatttggc tagcggggtt atgttcggat caactccccg tgacgtcatg 840 gtggtgggcg atcccgttga ctatcatagt aaattggatc gcatcccaag cagccgagga 900 tttcaatcgg ctgtgcgcag ggttgaagcc cgagccacta gctaaacgca agtttggctc 960 catgggaaac ccccgtttcg atccccaagt cggatatgtg gttgacgttt cacatggctc 1020 agacgtggtt acagttcccc tgccattctc gctattgtca ggagtcgctg gttccgccct 1080 atacaggaaa acagtgacgg aggcatatgc ggggggaagc atgcccaccc cagtagcccc 1140 cgacaagcta cccgggtgtg tggtcacatt ataccatggt gagactttct tgggcttcgg 1200 ctctagagtt agaactccca atggtcaaga cttattgatg accaaccacc acatcgcgct 1260 actagagccc aacgcgatag caaagggtgg cgacatggtt gagtgtgatt ttggtcctat 1320 gaaatacgca tgccatgatc aaaggatgga ctgttgtttc tacaatgtgt ctcccaagat 1380 ctggtctctg ctcaaagttt catcagcgcc cttgaaaccc atgctcagac ccatggcgtg 1440 taatttgttc gggggcgtgt cctccacctc aatatccact agtttagcct ttgtgcggcc 1500 agagtcgaac ccttggttcc tccagcacaa cgctactact ggacgcgggt ggtcgggcac 1560 tcctctcatc cacaaaggag ctgtttacgg cctccatatt ggggctttgg ggtctgtcaa 1620 cgtggcatcc aatccggccc tatacttcct gacttatagg cgggaggtgg aagtcgagtc 1680 tcctgagctc tggaaatccg tgcctaatga aatcacaaat gaggagtatg agtcccgtcg 1740 ttctcaaggt attcacttct acgaacttga tttcggagga gatagaatta aggtctcaga 1800 ccgagaatgg gtccgacact cagcaaggag agctcagaag actaagcagc ttgaaggtgg 1860 gcgtgattgg ggtgatgttg aggatgacga ggaatgggaa gttacggttg aggcagctgt 1920 ttcagtgcct cccgtaattg gtgaaccacc aactccgagc ctacaatcag cgtcatctct 1980 gcagtcatta cacactgctc cgacccggaa gaccagaagg cggcggaaac ccactgcaac 2040 tgttcaggtt gaaggtgagc ctttaaacta ccagcgggcg gacctcctac gggagagtcc 2100 gcccttggaa ggcttattca gcttgggaac taccaatgga tcgacggaca gcttctcaca 2160 gcctccgtct ccggtatgcc cctcacagca gttggaagaa gtgattgccg gtttagggaa 2220 ggaactcaga agcctccggg acctcgtgtc tcagcagcgg ttagagtttt cccagaactt 2280 gcagactatg cgtggccagc tcgaggatct gaagcagaac tcgaatctct cagagtccaa 2340 gcaagcaggt tcaagcgcac gctaccgccc ccctcactcc aggaagcagt caacgccctc 2400 caaggacgat acccaaacag ccaagtccgg aaatgtttca gacaagagcc gtgggacttc 2460 caagcgttat gtgaagaagt ccaacggatc tgccaaacag gagagctaaa tgggacgtcc 2520 tcgccaggag taccgctagc taacattgaa aatcagaacg cagcggtact gaacttagct 2580 cccgagctag ttcacctggc agtggctgag aggctcgtcg ctttagcagc ggttgacccc 2640 cgccagcaca actggacacc aaaggagctc gttcaacgag gccttgtgga tcctgtgaga 2700 ctcttcgtca agcaagaacc acatacgatg cggaagattc gagaacgccg atttcggctg 2760 atctcttctg tgtccttggt ggaccagctc gtggagcgga tgttgtttgg cccacagaat 2820 gctacagaga tatcgatgtg gcacctttgt ccgtcgaaac ctggcatggg catgagcact 2880 ccaagtcaag tagagatgct ttggaaggat gtcgctcaca agcattccct gcaccaagct 2940 gctgaagccg acatttcggc gttcgattgg tcagtccaag attgggagtt atgggctgat 3000 cttgccatac gcctgcaatt gggatcattc ccagatctca tgaggagagc cgcgatttca 3060 cgcttttact gtttcatgaa ctccgtgttc cagctcagtg atgggacctt gatagagcaa 3120 aacctgccag gtctcatgaa atccggttca tattgcacat catctaccaa ctccagaatt 3180 cgttgcctta tggctgagct tatcggctcc ccatggtgta ttgctatggg tgatgattct 3240 gttgagggat gggtagaggg agcccaagag aagtacgccg ccctaggcca cacttgtaaa 3300 gagtacgtgg cttgcccttc taaacaagga cgcctaggga aggagcttct cagcttcaac 3360 ttctgctctc atgagttcac aaatccaggc ctgccccgag ccgaactgtt gacatgggcc 3420 aaatgcctgt accggttcct gtcttccaac agggagacag tagatgactt gtgggttgag 3480 ctaaacacaa gcaggcaatg gggccgaatc cagaaatatc tcgctgggat aggggaagtc 3540 tcccagttaa attctgcaga tggggagatc aaagcagaag aaatccaaga ggatgccgca 3600 ggctgcggcg gtcaagaacc agcagccagc gccttcgagg aggcaaggga gatctggatc 3660 gagccaacgc cagcccagca atgggataac aacatcggcc cccatggcta cgagtgggat 3720 tggcccttct cggagtcttg gtccccttgg gggcgcgatc acagttgaag aggtagagca 3780 cctcggggct ttcacccgag gaactacagc cgctggtcaa accagggctt atctttgcat 3840 gccttcttca ctaatacggt taagcaacat cgctaggtgc ttcgctcggt ggcgaccact 3900 tcagtggagc gtattttacg ttcctgaagt aggaacccag accaacggag ctattcaaat 3960 ggcttatctg tatgattatg gggatagttt gccgacaaca acaggacaaa tcagtgcctg 4020 tagcggcttt cttaccgctg ctgtctggtg tggggcagcg ggtgcgcaac tcctgtctgg 4080 gaaggctccc cgttcccaga atttggttat tgcgcatatg gattgtagac gttccgagtg 4140 gatgcgagtc gtagacggat taaccgatac agaccctgct catgtcgtca acacctacct 4200 accagcccgt gctgtggtgc gatcgtcctt gctcccatct acggaagaca ctccggggca 4260 gttgtacgtc cgttatcgga taatgctccg tgatgctgtc gctcctggac tcaacgatgc 4320 gtcgagctct gctccctcgg tagaccagga gagaaagggc aatgcggctg tagtctcatg 4380 actcgccgga ctctcctacc tttggagagt tgccatgaga ggcctaaatc tcaaccccct 4440 ctgttgtcgc ggcgacggag gatccatggg attttcacaa cccgcgcatc ggtccccagg 4500 tacaccagtg tacgtggggt cccgatggtc tttatgagaa agtaatt 4547 //