ID AM980883; SV 1; circular; genomic DNA; STD; VRL; 2420 BP. XX AC AM980883; XX DT 01-MAY-2008 (Rel. 95, Created) DT 01-MAY-2008 (Rel. 95, Last updated, Version 1) XX DE Wheat dwarf virus - Barley/SxA43-16, complete sequence XX KW complete genome. XX OS Wheat dwarf virus - barley/SxA43-16 OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Mastrevirus; Wheat dwarf virus. XX RN [1] RP 1-2420 RA Schubert J.; RT ; RL Submitted (02-APR-2008) to the INSDC. RL Schubert J., Inst. for Biosaf. of Genet. Modif. Plants, Julius Kuehn Inst., RL Fed. Res. Centre, Erwin-Baur-Str. 27, D-06484 Quedlinburg, GERMANY. XX RN [2] RA Schubert J., Habekuss A., Qui Y., Zhou X.; RT "Appearance of defective forms of Wheat dwarf virus"; RL Unpublished. XX DR MD5; 4278a6d96b7bb87b6dc33319cba8691f. XX FH Key Location/Qualifiers FH FT source 1..2420 FT /organism="Wheat dwarf virus - barley/SxA43-16" FT /mol_type="genomic DNA" FT /country="Germany:Saxony Anhalt" FT /isolation_source="Hordeum vulgare" FT /collected_by="Antje Habekuss" FT /collection_date="31-Mar-2007" FT /identified_by="Joerg Schubert" FT /db_xref="taxon:520123" FT misc_feature join(2186..2420,1..171) FT /function="bidirectional promoter" FT /note="long intergenic region" FT exon 172..444 FT /gene="Tra" FT /number=1 FT CDS 172..444 FT /gene="Tra" FT /product="transport protein" FT /function="intracellular transport of virions" FT /db_xref="GOA:B2G3L9" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B2G3L9" FT /protein_id="CAQ42959.1" FT /translation="MDQVFTPPRSIRADQYQAPYDPGSSDYAWRTFVFVSFGLLISVGV FT VWLAYTLFLKDCILVWKAKKQRRTEEIGYGNTPARPNGDQQGLPR" FT mRNA 172..444 FT /gene="Tra" FT exon 416..622 FT /gene="CP" FT /number=1 FT mRNA 416..622 FT /gene="CP" FT CDS 416..610 FT /gene="CP" FT /product="truncated coat protein gene" FT /function="enveloping DNA" FT /db_xref="GOA:B2G3M0" FT /db_xref="UniProtKB/TrEMBL:B2G3M0" FT /protein_id="CAQ42960.1" FT /translation="MVTNKDSRGKGKRKLEEGESSGRWKGQVYKRRKQTYKVVPVRPPA FT LCVYRYNWLNSDNTIFSSE" FT misc_feature 611..942 FT /note="DNA of unknown origin" FT misc_feature 943..1055 FT /function="regulation" FT /note="short intergenic region 5'end deleted" FT CDS complement(join(1056..1469,1556..2185)) FT /gene="C1-2" FT /product="Rep" FT /function="replication complex" FT /db_xref="GOA:B2G3M1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B2G3M1" FT /protein_id="CAQ42961.1" FT /translation="MASPSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR FT DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW FT SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNEHLYSESPGRHKSIYIC FT GPTRTGKTSWARSLGIHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF FT TVNPKYGKRKMIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVIHYMYEGESFFAFG FT ENVTASQ" FT mRNA complement(join(1056..1469,1556..2185)) FT /gene="C1-2" FT exon complement(1056..1469) FT /gene="C1-2" FT /number=2 FT CDS complement(1391..2185) FT /gene="C1-1" FT /product="RepA" FT /function="replication complex" FT /db_xref="GOA:B2G3M2" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B2G3M2" FT /protein_id="CAQ42962.1" FT /translation="MASPSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR FT DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW FT SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNEHLYSVSLESYILCTST FT PADKAVTDLEWMDDYSRSHRDGISPSTSAVRQEQERLPGQDL" FT intron complement(1470..1555) FT /gene="C1-2" FT /number=1 FT exon complement(1556..2185) FT /gene="C1-2" FT /number=1 XX SQ Sequence 2420 BP; 631 A; 557 C; 622 G; 610 T; 0 other; accctgcgtg gtgggtcccg aggcgcactc ggcttttcgt gagtgcgccg aggcttttgg 60 accacgtctt tatgtcatca catcaattat agttggtgag tcatcacata ttccacctgc 120 aattatgtgc catcgcttag cttataagga agtgtcgggg aaggtatctc gatggatcag 180 gtctttacac cgccgcgttc tatacgggca gatcaatacc aggcccctta cgatcccggg 240 tcctccgact acgcctggcg gacctttgtg ttcgtctcct tcggtttgtt aatatccgta 300 ggagttgttt ggttggctta cactctgttc ttgaaggact gcatattagt gtggaaggcg 360 aagaagcaga ggaggaccga ggaaattggt tacggtaata caccggccag accaaatggt 420 gaccaacaag gactcccgag gtaagggaaa gaggaagctc gaggagggcg aatcgagtgg 480 aaggtggaag gggcaagtgt ataagcggcg taagcagacc tacaaggtag tacccgtgag 540 gccacccgcc ctgtgtgtgt accggtataa ctggctcaat tcagacaata ccatcttcag 600 cagtgagtaa ccgtggggct agtgcaccca aacgagattc ccttaacacc cttgcccctt 660 tgggcattct ttaacacaac aagaaataag ttccatgcat tacatgaata aatatgggga 720 gatggggtcc ccctgcctta gccctctcca cgacacaaac ccgcgcgaga agcctccatt 780 taacttaact gaaaactgcg ttgaagtaca tatcataatc atttcgattc actcatccgc 840 agaaccaaaa cgtgcctgca tctgctccaa aaaaaatcca tttcacactg tcatatgcct 900 tcatcctgcc caactcaaca acatagagcg ccttctttcc gtaagataaa ccaaactatg 960 acatacaaca cactcataac caaaacatcg aaaaaagaaa tacaagggtc gagatcacac 1020 aattttagaa accgtagccg tccgcgctag gacagtcact gcgaagcagt gacattttcg 1080 ccgaaggcga agaatgattc accctcatac atataatgta tcacagcgtt agagtacatg 1140 taatccgact gttcaggagt catatccttg agccaatctt cgtctgggtt aactaaaatg 1200 atgcaaggta taccaccccg tatcattttt cgcttcccgt acttaggatt gacggtgaag 1260 tcacgctgag ccccgacgaa gcacttccag tttggcgtga acttgaatgg aatgtcgtca 1320 attatgttgt acttggcgtt gacgtcatag gtcgtgaaat caactaggct gttgtagtag 1380 ttgtggatcc ctagagatct tgcccaggaa gtctttcctg ttcttgtcgg accgcagatg 1440 tagatggact tatgccgtcc cggtgactcc tggaataatc gtccatccac tctaaatcag 1500 ttacggcctt atccgcagga gtggaagtac aaaggatgta tgattcgagg cttacggagt 1560 atagatgttc atttttccag ctttcaatgg tctcatgaca catgagggac tcgatgggaa 1620 actcaggtgt gtaagtgcta actgggtctg ggaataggtg gcgtgcagtg tattcgaagt 1680 ctttcagacg gatagaccat tcaaacggaa aacgatggca gaccatgctg agaaattcct 1740 ctctcgaggt actcgactca atgatctgtt tcatatccgc gtctcggtct ttacgacccg 1800 gagtggtaac tgctacgaat gttccccact cagccgtgtt gacatcggag tcaacctcct 1860 tcatgatgta atcacgaact tggttgcagt ctttggcagc ttgaatgtta ggatgaaaaa 1920 atgaaaatgg tgatgtgttc ataccaatgt tgagagcatt gggattggtg atggaagcac 1980 gaagcttgtt ttgcacgagt acgtgcagat gtggtgatcc atcttcgtgg agttccctaa 2040 ctgcagctat gtacagaggt tcatatttgg ccaagagagt gcgaagagag tccaaggcgt 2100 actgtggctc taggatgcat tgaggatatg ttaggaagag gtatttggaa tagacacgga 2160 acctgggtgc agatggagag gccatagtag caagcagaag cccggcaggt ccttagcgaa 2220 aaaacggggt gtgctcgcga actctactct ctaccctgcg tgggagtgtg cagaattcac 2280 accgatgggc tcggtgtcca cggtttaaat attgcaggtt taggtgggaa cgcgggacca 2340 tgtcttttcg gcgcgaaagc gacgggtggt cccgcgtgtg gtttgtggct cggggacccg 2400 ccacgcagga atctaatatt 2420 //