ID   AM980882; SV 1; circular; genomic DNA; STD; VRL; 2095 BP.
XX
AC   AM980882;
XX
DT   01-MAY-2008 (Rel. 95, Created)
DT   04-APR-2013 (Rel. 116, Last updated, Version 3)
XX
DE   Wheat dwarf virus complete sequence
XX
KW   complete genome.
XX
OS   Wheat dwarf virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2095
RA   Schubert J.;
RT   ;
RL   Submitted (02-APR-2008) to the INSDC.
RL   Schubert J., Inst. for Biosaf. of Genet. Modif. Plants, Julius Kuehn Inst.,
RL   Fed. Res. Centre, Erwin-Baur-Str. 27, D-06484 Quedlinburg, GERMANY.
XX
RN   [2]
RA   Schubert J., Habekuss A., Qui Y., Zhou X.;
RT   "Appearance of defective forms of Wheat dwarf virus";
RL   Unpublished.
XX
DR   MD5; 5d7138f8fbad38886dba1880fced5d98.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2095
FT                   /organism="Wheat dwarf virus"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Saxony Anhalt"
FT                   /isolation_source="Hordeum vulgare"
FT                   /collected_by="Antje Habekuss"
FT                   /collection_date="31-Mar-2007"
FT                   /identified_by="Joerg Schubert"
FT                   /db_xref="taxon:10834"
FT   misc_feature    join(1874..2095,1..171)
FT                   /function="bidirectional promoter"
FT                   /note="long intergenic region 5' truncated"
FT   mRNA            172..444
FT                   /gene="Tra"
FT   CDS             172..444
FT                   /gene="Tra"
FT                   /product="transport protein"
FT                   /function="intracellular transport of virions"
FT                   /db_xref="GOA:Q5K2S1"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:Q5K2S1"
FT                   /protein_id="CAQ42957.1"
FT                   /translation="MDQVFTPPRSIRADQYQAPYDPGSSDYAWRTFVFVSFGLLISVGV
FT                   VWLAYTLFLKDCILVWKAKKQRRTEEIGYGNTPARPNGDQQGLPR"
FT   exon            172..444
FT                   /gene="Tra"
FT                   /number=1
FT   mRNA            416..1198
FT                   /gene="CP"
FT   CDS             416..1198
FT                   /gene="CP"
FT                   /product="coat protein gene"
FT                   /function="enveloping DNA"
FT                   /db_xref="GOA:A6GVG4"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:A6GVG4"
FT                   /protein_id="CAQ42958.1"
FT                   /translation="MVTNKDSRGKGKRKLEEGESSGRWKGQVYKRRKQTYKVVPVRPPA
FT                   LCVYRYNWLNSDKTNIVVGNTPRIDLITCFAAGKADNNRHTNQTILYKFNLQGTCYVSD
FT                   SSCMFITPIRVYHWLVYDAEPKQATPDSTDIFTMPWNLLPSSWTVQRAWSHRFVVKRKW
FT                   CVNLVSDGRKVGSKTVDSRYNYVVGKNIVDASKFVKGLRVTTEWMNTGDGKIGDIKKGA
FT                   LYLVTCTRGGITGDSASISFEVVCAYTHACYFKSIGIQ"
FT   exon            416..1198
FT                   /gene="CP"
FT                   /number=1
FT   misc_feature    1199..1369
FT                   /gene="short intergenic region"
FT   misc_feature    complement(1370..1607)
FT                   /gene="Rep"
FT                   /product="truncated replicase"
FT                   /function="replication"
FT                   /note="5' region of the gene truncated by sequence
FT                   duplication"
FT   repeat_region   1607..1873
FT                   /rpt_type=DIRECT
FT                   /note="duplication of sequence from CP gene and short
FT                   intergenic region"
XX
SQ   Sequence 2095 BP; 553 A; 483 C; 543 G; 516 T; 0 other;
     accctgcgtg gtgggtcccg aggcgcactc ggcttttcgt gagtgcgccg aggcttttgg        60
     accacgtctt tatgtcatca catcaattat tgttggtgag tcatcacata ttccacctgc       120
     aattatgtgc catcgcttag cttataagga agtgtcgggg aaggtatctc gatggatcag       180
     gtctttacac cgccgcgttc tatacgggca gatcaatacc aggcccctta cgatcccggg       240
     tcctccgact acgcctggcg gacctttgtg ttcgtctcct tcggtttgtt aatatccgta       300
     ggagttgttt ggttggctta cactctgttc ttgaaggact gcatattagt gtggaaggcg       360
     aagaagcaga ggaggaccga ggaaattggt tacggtaata caccggccag accaaatggt       420
     gaccaacaag gactcccgag gtaagggaaa gaggaagctc gaggagggcg aatcgagtgg       480
     aaggtggaag gggcaagtgt ataagcggcg taagcagacc tacaaggtag tacccgtgag       540
     gccacccgcc ctgtgtgtgt accggtataa ctggctcaat tcagacaaga ccaatatcgt       600
     ggtgggtaac acccctcgga ttgatctgat tacctgcttt gcagcgggca aggccgataa       660
     taatcggcat acaaatcaga ccatcctcta caagtttaac ctgcagggga cctgttacgt       720
     gtcggactcc tcatgtatgt tcataacccc aatcagggtt tatcactggt tggtctatga       780
     tgcagagccg aagcaggcta cgcctgactc cactgacatc tttacgatgc cgtggaatct       840
     cctgccgagt tcatggactg tgcagagggc ttggtcgcat cggttcgtgg tgaagaggaa       900
     gtggtgcgtg aacctggtct ccgatggaag gaaggttgga tccaagacgg tggactcccg       960
     ctacaactac gtagtgggga agaatattgt tgacgcctcc aagttcgtga agggtttacg      1020
     cgtgacgacg gagtggatga acacgggtga cggcaagata ggcgatatta agaagggtgc      1080
     cctgtaccta gtaacctgta ctcgtggagg aatcactggt gacagtgcct ccatttcatt      1140
     cgaagttgta tgtgcctata cgcacgcgtg ttacttcaaa tccattggga ttcaataaat      1200
     aaaatagtat tttattcatc tcatgtcatt cgattacaga tgctcggcta cgagcaaaga      1260
     taaaccaaac tatgacatac aacacactca taaccaaaac atcgaaaaaa gaaatacaag      1320
     ggtcgagatc acacaatttt agaaaccgta gccgtccgcg ctaggacagt cactgcgaag      1380
     cagtgacatt ttcgccgaag gcgaagaatg attcaccctc atacatataa tgtatcacag      1440
     cgttagagta catgtaatcc gactgttcag gagtcatatc cttgagccaa tcttcgtctg      1500
     ggttaactaa aatgatgcaa ggtataccac cccgtatcat ttttcgcttc ccgtacttag      1560
     gattgacggt gaagtcacgc tgagccccga cgaagcactt ccagtttagg cgatattaag      1620
     aagggtgccc tgtacctagt aacctgtact cgtggaggaa tcactggtga cagtgcctcc      1680
     atttcattcg aagttgtatg tgcctatacg cacgcgtgtt acttcaaatc cattgggatt      1740
     caataaataa aatagtattt tattcatctc atgtcattcg attacagatg ctcggctacg      1800
     agcaaagata aaccaaacta tgacatacaa cacactcata accaaaacat cgaaaaaaga      1860
     aatacaaggg tcgagcccgg caggtcctta gcgaaaaaac ggggtgtgct cgcgaactct      1920
     actctctacc ctgcgtggga gtgtgcagaa ttcacaccga tgggctcggt gtccacggtt      1980
     taaatattgc aggtttaggt gggaacgcgg gaccatgtct tttcggcgcg aaagcgacgg      2040
     gtggtcccgc gtgtggtttg tggctcgggg acccgccacg caggaatcta atatt           2095
//