ID AM941711; SV 6; linear; mRNA; STD; VRL; 7039 BP. XX AC AM941711; XX DT 10-MAR-2009 (Rel. 100, Created) DT 03-NOV-2009 (Rel. 102, Last updated, Version 5) XX DE Fig mosaic virus mRNA for RNA-dependent RNA polymerase (RdRp gene) XX KW . XX OS Emaravirus fici OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Fimoviridae; Emaravirus. XX RN [1] RC revised by [4] RA Elbeaino T.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Elbeaino T., IPM Virology, Istituto Agronomico Mediterraneo di Bari, Via RL Ceglie 9, 70010 Valenzano, Bari, ITALY. XX RN [2] RX DOI; 10.1099/vir.0.008649-0. RX PUBMED; 19264612. RA Elbeaino T., Digiaro M., Alabdullah A., De Stradis A., Minafra A., RA Mielke N., Castellano M.A., Martelli G.P.; RT "A multipartite single-stranded negative-sense RNA virus is the putative RT agent of fig mosaic disease"; RL J. Gen. Virol. 90(Pt 5):1281-1288(2009). XX RN [3] RA Elbeaino T., Digiaro M., Martelli G.P.; RT "Complete nucleotide sequence of four RNA segments of fig mosaic virus"; RL Arch. Virol. 154(11):1719-1727(2009). XX RN [4] RP 1-7039 RA Elbeaino T.; RT ; RL Submitted (13-OCT-2009) to the INSDC. RL Elbeaino T., IPM Virology, Istituto Agronomico Mediterraneo di Bari, Via RL Ceglie 9, 70010 Valenzano, Bari, ITALY. XX DR MD5; 0bf4ea5376c9a4aaad3ec60dcf8b74ea. XX FH Key Location/Qualifiers FH FT source 1..7039 FT /organism="Emaravirus fici" FT /segment="RNA1" FT /host="Ficus carica" FT /mol_type="mRNA" FT /identified_by="Elbeaino T." FT /db_xref="taxon:1980427" FT 5'UTR 1..39 FT /gene="RdRp" FT CDS 40..6933 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:C0H5V4" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="UniProtKB/TrEMBL:C0H5V4" FT /protein_id="CAQ03479.7" FT /translation="MEAKKGEIFESAINNIRSGDALPPDLMSKFLHIAGKTLKGYTITS FT KKRNIEKIYKQCTSDVHFHKDLVSLSEGILHTPPNQSQIDIAATLIGLLELSRHDLLIL FT CINELLQNQGYTIMGYDVPIKDVFPEIDSILTPDIFFADDYDYYILEVKVRGKKTDLSV FT YYNRYKSVVDGSQKRIKVSVFNVSRSGYIEMGDYKISNLINIDPSTIEDITYCIDLCQN FT LREKYGRYPEFGFYMQDGMLADSSEPLIESGFKQMVFEHKNYAEISNLFGSKWNEIVTD FT TDNISLISNPEDTVEKLLDAQKVLYQDCSDRYIEFQSHLEKNYMNTNSYNKTYLNDCNL FT SKILDKKNESLYNIVDTYKPSIYIPIAKTVFLDKFGFSRFDFYKSAFVDIQERGDSYTK FT SVINLVNTIFNSVSIDLLIKKNNEIDPETYKDVLTPDFCKYINDTSNKFKKIATVSNIT FT SDTSILNNNAFSINHHVDKHMKENICGFQRKHYDANVPKKNCISMKNSEDDALELLKLM FT GEIFNSEHYEGVYANDLVDIEVDNMNSHVCNLPKNCKTKYLDHLYSQHNIFKALISLNT FT VNSHKFRLIQTADPCTILIMLPNADTLRSAPLRYFTLTIIDKKDNTSYHANKLLGIAHE FT LLIGRNYNVILSKVISLDVTRLKLLNHSFGKYCLIMSYYSTIKKDLRHQIHFMVWILCQ FT FITISSLSITDTYKNFVMAIYSDYSNIDNLIDDKLESRPTTLGHVIILQRCFHGLLQAS FT TQLKVINKNKNSEEIDERGDLIETGFNNNLSLKLPISGISVNNPREIIHEAFMLFYLGN FT KGLHGSPQELLNLYYTPYKFEQEYTDVIQRYRTILQEDGNVSNMSVSYDVMKKTSLAAY FT SNIYNKKENIRQSICNELEINKPLLALRQFSSTKSMVSNTKQVEIELPKKLPDNLDLYG FT LENIISNCKIDEDMEFMRFINSEIYRINSKRLKNEMSSSTREEKREVTLLPEIYIETKK FT GVKFLRIKRHEYTRLINGDYIRQNNAKVFDEFYKLSEEYELVSLKDAYSKLIHDDELLI FT RIFYKDQRTADDREIYTGNAQTRLLFVSNKKTYKAICKHIPGEAITISGDQKQKKLLEQ FT RLQLIKEKKQKIKDKKWAEIYSVSSDASKWSARDVFLKFLITISVNPYLHPDEKWFLLY FT LCMTYYTKKIVFTDTIFNKMVDLADGDKHGKYEYMTEDFTQNYFTVRSNWLQGNLNMIS FT SFVHHCSTLYTETMLKILSDKNSLECSMTSMVHSDDSTYDFLICRDKKSKNRYVKEENI FT GKLIISLITYSNRFHCITLNEKKTYISTFYKEFLSTIIVGNELFFFYLADLLPLTSDTS FT YASPLQDLASYSGYINNSFSHACPREMIQTAIMLINHLTLSTYNMQYTSDKNPRLNIQA FT TDLPIQIYPRYKVPIEMAGMIPYYSADAFDILNDIVLKLGYNDKLQSELVEDILTEELI FT GDYLNIIKKHTPMIVKYIKSCILCMDYSQYERDDADPYNIIDYDLSQKSIINVISLNKG FT QRLKKTYTYKKYLESETNVRLISAIHPEWCVIKPADPELIKSNILQNYANPNFRDGLIF FT STPAIEYGRRVISSNKSMYTISSHIMEKDKAKNIKTVYNDLNEKIDEVEITAKDLQRYL FT SLYLLSDKKISMAIQVFFSKIETVTMARPSYNKVVQPRSIYSEDFGRYSNNSLIESLLT FT SRYCKITTVDPKVEKFVDVSDYVLERIGDIKLYESPEDIDDDYINYYHLKYPHSDEIML FT DVEPISDLGDLELKIYKNKLKFMSLIVKYYTDIKKTIENPNYNIPNYPSPSSIIMTIDS FT LLKKDEISTKVYLSNVRSIKYDDYLLTRYGMYAHNDFHIKYKLGYKVKIASSTKISNTL FT QTYKDTYEPIAFVTKLISRNLELFTSLKDNEEFVTGHYKFNDMINTLQNSRDINSSALL FT LMLDKIPSSRFMITLLNDNRVYNHWLIPTNSLQEDPGASLAYYMCQGNIMRVRTFTRGG FT SIVFTMTYYRYVNRDLGALTNIKKKISMDYVELLRRSLVTNRVEPTSLYDTYNINEYGR FT YTEYKGSRVFNVAQINYAKILNIKPAYTEINDQVKLILNIGTNEDHFTFDIRLRTYIDD FT EYYLNCLLDNLHIERENILGYLCEGTFFHRYPDYLKRILATLGPNQLVSLMSNYTDSDC FT ITDNIDINRYGFLMEISNYFREKDNIHMAELCETLEIVAMSTNVNIMNVRNPEKFINNC FT NKIKLHPLCHEYVIHKYRADEEAPYYRLFRLVMKYRYNKSPVEKIILFIILIFRFYIHE FT YIDVEAEFEY" FT 3'UTR 6934..7039 FT /gene="RdRp" XX SQ Sequence 7039 BP; 2665 A; 1022 C; 1139 G; 2213 T; 0 other; agtagtgaac tccctttatt atcaaaatca caaaatccaa tggaagctaa aaaaggtgaa 60 atattcgaga gtgcgatcaa caacataaga tctggagatg cattaccacc tgatctcatg 120 agtaagttct tgcacatagc tggtaagaca ctgaaagggt atacaatcac atctaaaaaa 180 aggaatattg aaaagatcta taagcagtgt actagtgatg tccatttcca taaggatctt 240 gtgtcactct cagaaggaat attacataca ccacccaatc agagtcaaat tgatatagct 300 gccactttaa ttggtttgct tgaattatct aggcatgacc tgttgatctt atgtattaat 360 gagttattgc agaatcaagg ctacaccatc atgggctatg atgtgccaat caaagatgtg 420 tttcctgaaa ttgatagtat tttaacacct gatatatttt tcgcagatga ttatgattat 480 tacatactag aagttaaagt tagaggaaag aaaactgatt tatctgttta ttataatagg 540 tacaaatcag ttgtggatgg ctcacagaaa cgcattaaag tcagtgtttt taatgtttca 600 aggtctggtt atattgaaat gggtgattac aaaatttcaa atctcatcaa tattgaccca 660 tctactattg aggatataac atactgtata gacctatgcc agaacttaag agaaaagtat 720 ggcagatatc ctgagtttgg attttacatg caagatggca tgcttgctga tagtagtgaa 780 ccacttattg aatctggttt taaacagatg gttttcgaac ataaaaatta tgcagagatt 840 tcaaacctat tcggtagcaa atggaatgaa attgttactg acactgacaa cataagtctg 900 atatctaacc cagaagatac tgttgagaaa ctgttagatg ctcaaaaggt gctatatcaa 960 gattgttcag ataggtatat tgaattccaa tctcatttag agaaaaatta tatgaacacc 1020 aattcttata ataaaacata tttaaatgac tgcaacttgt caaaaatatt agacaagaaa 1080 aatgagtctc tatataatat tgttgacaca tataaaccct ctatttatat accaatcgca 1140 aaaacagtgt ttcttgataa atttgggttt tcaagattcg atttctataa atcagcattt 1200 gtagatattc aagaaagagg agattcctat accaagtctg ttatcaatct agtaaatact 1260 atatttaata gtgtctctat tgacttactc attaaaaaaa ataatgagat tgatccagaa 1320 acctacaagg atgtcttaac accagatttc tgcaaataca taaatgatac aagcaataag 1380 ttcaaaaaga ttgcaacagt atctaatata acaagtgata caagtatttt aaacaataat 1440 gcattttcaa tcaaccatca tgtagacaaa cacatgaagg aaaatatttg tggattccaa 1500 agaaaacact atgatgcaaa tgtcccaaag aaaaattgca tatccatgaa aaatagtgaa 1560 gatgatgcat tagaattgtt gaagttgatg ggagagatat tcaatagtga acattatgaa 1620 ggggtatatg caaatgacct ggtagatatt gaggttgaca atatgaatag tcatgtgtgc 1680 aaccttccaa aaaattgcaa aactaaatat ttagatcatc tctatagcca gcacaatata 1740 ttcaaagcat taatatcatt aaacactgtt aattctcaca agtttagatt gattcagaca 1800 gcagacccat gtacaatact aattatgctc ccaaatgcag atactctgag atctgcacca 1860 cttagatatt tcacacttac aataattgat aaaaaagata atacaagtta tcatgcaaat 1920 aaattgctgg gaatagcaca tgaattatta attggtcgga attacaatgt gatactatct 1980 aaggttataa gcttagatgt cacaagactt aagctgttaa accattcatt tggcaaatat 2040 tgtttgatta tgtcttatta ttccaccata aaaaaagatt tgaggcacca gatccatttc 2100 atggtatgga tactatgcca gttcattact atatcatcat taagcataac tgatacctac 2160 aagaactttg ttatggctat atattctgat tattcgaata ttgacaatct cattgatgat 2220 aagttagaat ctagacctac aacattaggg catgtaataa tcttacaaag gtgctttcat 2280 ggtttactcc aggcctcaac gcagcttaag gtgatcaaca aaaacaaaaa tagtgaagag 2340 attgatgaga gaggtgattt aatcgaaact ggatttaata acaatttatc attgaagttg 2400 ccaatatcag gcatcagtgt caataatcct agggaaatta tacacgaagc atttatgtta 2460 ttctatttag gtaacaaagg ccttcatggc tctccacaag aattattaaa tttatattac 2520 acaccataca agtttgaaca agaatatact gatgtaatac aaagatatag gactatcctg 2580 caagaggatg gaaatgtttc taatatgtca gtttcatatg atgttatgaa gaaaacatca 2640 ttagcagctt actcaaacat ttataataaa aaagaaaaca taaggcaatc tatatgtaat 2700 gagttggaaa tcaacaaacc actactagca ttaaggcaat tctctagtac aaaatctatg 2760 gtttccaaca caaagcaggt tgaaatagaa ttaccaaaaa agctaccaga taatctagat 2820 ttatatgggt tagaaaatat catatcaaat tgtaaaattg atgaagatat ggaatttatg 2880 agatttataa attcagaaat ttacagaatc aattcaaaga ggttaaaaaa cgagatgagt 2940 agctccacaa gagaagaaaa gagggaggtt actttattac ctgagatata tatagaaaca 3000 aaaaagggtg tgaagttttt aaggataaaa agacacgagt atacaagatt aatcaatggt 3060 gattacattc gacagaacaa tgcaaaagtt ttcgatgaat tttataaatt atctgaagag 3120 tatgaacttg tttcacttaa ggatgcatac tccaagttaa tacatgatga tgaattatta 3180 attcggatat tttacaaaga tcaaagaact gctgatgata gagaaatata tacaggtaat 3240 gctcaaacta gacttttgtt tgtatccaat aaaaagacat ataaggcaat ctgtaaacat 3300 attccaggtg aagcaataac aattagtggt gatcaaaagc aaaaaaagct actggagcaa 3360 agattacaat tgattaaaga aaagaaacaa aaaattaaag ataagaagtg ggctgaaatt 3420 tattctgtgt cttcagatgc atcgaaatgg tctgcaagag atgtattctt gaaattttta 3480 attacaatat cagtgaaccc atatctccat cctgatgaaa agtggttttt attatatcta 3540 tgtatgacct actacaccaa gaaaattgta tttactgaca ctatatttaa taaaatggtt 3600 gaccttgcag atggagacaa gcatggaaaa tatgagtaca tgactgaaga tttcacacaa 3660 aattacttca cagtgagaag caattggttg caaggaaacc ttaatatgat atcatctttt 3720 gtccatcact gctccacact gtacactgaa actatgttga agattttgtc agataaaaat 3780 tctttggaat gttctatgac atctatggtt cattctgatg attcaacata tgatttttta 3840 atatgtagag ataaaaaatc aaagaataga tatgtgaaag aagagaatat tggtaaactc 3900 atcatatctt tgattacata ttcaaacagg tttcattgta taacactaaa tgaaaagaag 3960 acatatatta gtacatttta caaagaattt ctttccacaa tcatagttgg taatgaactg 4020 ttcttttttt acttagctga tttactacca ttgacatcag acacaagtta tgcctcacca 4080 ttgcaagatc tagcatcata ctctggctac ataaataatt ctttttcaca tgcttgccca 4140 agagaaatga tccaaacagc catcatgctg atcaatcatt tgacattatc cacatataac 4200 atgcagtaca catctgataa aaatccaagg ttaaatatac aagccactga cttacctatc 4260 caaatatacc ctcgttataa agtaccaatt gagatggctg gcatgatacc ctattattca 4320 gcagatgcat ttgatatcct taatgatata gtattgaaat tgggttacaa tgataagctt 4380 cagtcagagc ttgtggaaga tatccttact gaagagctca ttggtgatta tctcaatata 4440 ataaaaaaac atacaccaat gattgttaaa tatattaagt catgtatctt gtgtatggat 4500 tattcacagt atgagagaga tgatgcagat ccatataata taatagatta tgacttgagt 4560 caaaaatcta ttattaatgt tattagcctt aacaagggcc agcgattaaa aaagacttat 4620 acatacaaga aatatttaga atcagaaact aacgtacgat taatatctgc tatacatcct 4680 gaatggtgtg tgataaaacc agctgaccca gagttaatta agtcaaatat actacaaaat 4740 tacgcaaacc ccaattttag ggatggatta atattttcca ctccagcaat tgagtatggt 4800 cgtagagtta ttagttcaaa caagagtatg tataccataa gttcacatat catggaaaag 4860 gataaagcaa aaaatataaa aacagtgtac aatgatttaa atgaaaaaat agatgaagtt 4920 gaaataacag ccaaagatct acaaagatat ctaagcctgt atctgctaag tgataaaaaa 4980 atatccatgg ctatacaggt gtttttttct aagatagaaa cagtgacaat ggctagacca 5040 tcatataaca aggtagttca accaaggagc atatattctg aagattttgg tagatactct 5100 aacaattcat taatagaatc ccttttaact tcaagatatt gcaaaataac cacagttgat 5160 cctaaagttg agaaatttgt tgatgttagc gattatgttc tagagagaat tggtgatatt 5220 aaattatatg agtcaccaga agacattgat gatgattaca tcaattatta tcatctcaaa 5280 tatcctcatt ctgatgagat tatgttggat gttgagccta tttctgattt aggtgatctt 5340 gagcttaaaa tttacaagaa taagctgaaa tttatgtcat taattgtgaa atattatact 5400 gacataaaaa agaccattga aaacccaaat tataatattc ccaattatcc atccccttct 5460 tctataataa tgacaataga ctcattgcta aaaaaggatg aaatcagtac caaagtgtac 5520 ttatcaaatg tgaggtctat caaatatgat gattacttgt tgactagata tggtatgtat 5580 gcccataacg actttcacat taagtacaaa ttaggttata aagttaaaat tgcatctagt 5640 acaaagattt caaacacatt gcaaacatat aaagatacat atgaaccaat agcatttgtc 5700 accaaattaa tatctaggaa tctagaattg tttacttcac taaaagataa tgaggaattt 5760 gtaacagggc attataaatt taatgatatg attaatacac ttcagaatag tcgagatatc 5820 aatagcagtg cattactgtt aatgttggat aaaataccaa gctctaggtt tatgattaca 5880 ttacttaatg ataacagagt atacaatcac tggttgatac caacaaatag cctacaggaa 5940 gatcctggtg cttctttagc ttattacatg tgtcaaggca acataatgag agtcagaact 6000 tttactagag gtggttctat agtgttcaca atgacttact acagatatgt aaatcgagat 6060 ctcggtgctc ttaccaatat aaaaaagaaa atatcaatgg attatgttga gttattaagg 6120 agatctctag tgacaaatag agttgaacca acatctttat atgatactta taatataaat 6180 gagtatggta gatatactga atataagggc tcaagagtgt ttaatgttgc acagataaat 6240 tatgccaaaa tattaaacat taagccagct tacactgaaa ttaatgatca agtgaaactt 6300 attctcaaca ttggaactaa tgaagatcat tttacatttg atatacgatt acgtacatat 6360 attgatgatg aatattattt gaattgtctg ctagacaatt tacatataga gcgtgaaaac 6420 attttaggtt atctatgtga gggcacattt tttcataggt accctgatta tcttaaacga 6480 attcttgcaa cactcggacc aaatcagctt gtgtctttaa tgtctaacta cactgattct 6540 gactgcataa cagataatat agatataaat cgatatgggt ttctaatgga aattagtaat 6600 tactttagag aaaaagataa tatacatatg gcagagttgt gtgagacatt agagattgtg 6660 gcaatgagta ctaatgtaaa cataatgaat gttagaaatc ctgagaaatt tataaataac 6720 tgtaataaaa ttaagcttca tccattatgt catgaatatg tgatacataa atatcgtgca 6780 gatgaagaag caccatatta tagattattt agattggtta tgaagtacag atacaataag 6840 agccctgttg aaaaaatcat tttatttatc atcttgatat ttaggtttta tattcatgaa 6900 tatattgatg ttgaagctga atttgaatat tgatagatct ttaatttatg tgtaaccttt 6960 atgctttgat ttatttataa cctttatgct ttttattgat ttttttatat ttttgttata 7020 ttaaagggag aacactact 7039 //