ID AM933135; SV 1; circular; genomic DNA; STD; VRL; 2573 BP. XX AC AM933135; XX DT 22-JAN-2008 (Rel. 94, Created) DT 04-APR-2013 (Rel. 116, Last updated, Version 3) XX DE Chickpea chlorotic dwarf virus complete genome, clone CpCDSV_Eco18 XX KW complete genome. XX OS Chickpea chlorotic dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2573 RA Gronenborn B.; RT ; RL Submitted (10-JAN-2008) to the INSDC. RL Gronenborn B., Institut des Sciences du Vegetal, Centre National de RL Recherche Scientifiqu, Gif sur Yvette, 91198, FRANCE. XX RN [2] RA Timchenko T., Hassan M.M., Hamed A.M., Dafalla G.A., Vetten H.-J., RA Gronenborn B.; RT "Molecular characterization of chickpea chlorotic dwarf virus from Sudan"; RL Unpublished. XX RN [3] RA Hassan M.M.; RT "Epidemiology & Molecular Characterization of Chickpea Chickpea Chlorotic RT Dwarf Virus from Sudan"; RL Thesis (2000), Phytopathology Centre, Faculty of Agricultural Sciences, RL University of Gezira, Wad Medani, Sudan. XX DR MD5; 1b3fa712321ec52e872d3ec873ea6601. XX FH Key Location/Qualifiers FH FT source 1..2573 FT /organism="Chickpea chlorotic dwarf virus" FT /host="Cicer arietinum" FT /mol_type="genomic DNA" FT /country="Sudan:Abu Haraz" FT /isolation_source="Cicer arietinum" FT /collected_by="Mahmoud M. Hassan" FT /collection_date="1997" FT /clone="CpCDSV_Eco18" FT /tissue_type="leaves" FT /db_xref="taxon:463360" FT misc_feature <1..132 FT /note="large intergenic region (LIR)" FT CDS 133..411 FT /gene="V1" FT /product="movement protein" FT /db_xref="GOA:B0BL30" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B0BL30" FT /protein_id="CAP69811.1" FT /translation="MERILFQVFPSYTNYSYDPVPETVAPQASSQTDFGKVVIALVVIL FT VSVGVFYLAYTLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPQP" FT CDS 424..1161 FT /gene="V2" FT /product="capsid protein" FT /db_xref="GOA:B0BL31" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B0BL31" FT /protein_id="CAP69812.1" FT /translation="MSTVTWGRKRKRSGGESKAKSRASGSYVPRSVSSRRESLQVATFS FT WTSSGSGIKFSAGGAAYLISNFPQGANDNCRHTNKTVLYKFMSKNTVYLDPSHYSKVFR FT CPFTFWLVYDKSPGPNVPSTGDIFEGPSLFPNNPWTWTVSRASCHRFVVKKTWTCMVES FT NGIDPGKAQGSTYYGPGPCNQIKSCNKFFKRLGVSTEWKNSATGDVGDIKEGALYIVGA FT PSQKSDVYVNGYFRVYFKSVGNQ" FT misc_difference 1029..1034 FT /compare=AM933134.1 FT /note="3 (silent) nt changes artificially introduced to FT create cloning site" FT misc_feature 1162..1317 FT /note="small intergenic region (SIR)" FT CDS complement(join(1318..1731,1818..2408)) FT /gene="C1:C2" FT /product="replication initiator protein (Rep)" FT /db_xref="GOA:B0BL32" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B0BL32" FT /protein_id="CAP69813.1" FT /translation="MPSASMNFRLQSKYVFLTYPKCSSQRDDLFEFLWQKLTPFLIFFL FT GVATELHQDGTTHYHALVQLDKKPCIRDASFFDFEGNHPNIQPARNSKQVLDYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLNMIKDEFPHEWATKLQWLEYSANK FT LFPPQPEPYVSPFTESELRCHEDLASWRDTHLYHDEGRAGTRHPSLYICGPTRTGKTTW FT ARSLGRHNYWNGTIDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQLDFTVNPKYGKKK FT KIKGGIPSIILCNPDEDWMASMSSQQKDYFEENCITHYMYDGETFFARQSSSH" FT exon complement(1318..1731) FT /gene="C1:C2" FT /number=2 FT CDS complement(1530..2408) FT /gene="C1" FT /product="replication associated protein (RepA)" FT /db_xref="GOA:B0BL33" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B0BL33" FT /protein_id="CAP69814.1" FT /translation="MPSASMNFRLQSKYVFLTYPKCSSQRDDLFEFLWQKLTPFLIFFL FT GVATELHQDGTTHYHALVQLDKKPCIRDASFFDFEGNHPNIQPARNSKQVLDYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLNMIKDEFPHEWATKLQWLEYSANK FT LFPPQPEPYVSPFTESELRCHEDLASWRDTHLYHVSIDAYTLVHPVTYEQAKTDLEWMA FT DITRTREGLEPDTPASTSADQLVPVRPPGLEVSDDTTTGMGPSTSPHMMNMPHTMSSTT FT SPSSSSHCGSN" FT intron complement(1732..1817) FT /gene="C1:C2" FT /number=1 FT exon complement(1818..2408) FT /gene="C1:C2" FT /number=1 FT misc_feature 2409..>2573 FT /note="large intergenic region (LIR)" XX SQ Sequence 2573 BP; 682 A; 518 C; 623 G; 750 T; 0 other; accggcgtgg ccccccctta tcgcgagtgc tttagcacga gcggttcaga ttgaattgga 60 aaaagttccc gcccactagg gtttgctttt gcttttgctt tataaaaggc gcactacatt 120 gtagagcgta tcatggaacg tattttgttt caggtatttc cgtcgtatac gaactattca 180 tacgaccctg ttccagagac tgttgctcca caggcatcat ctcaaacgga tttcggtaag 240 gtggtcatcg ccttggtggt tattctggtt agtgttggtg tgttctatct ggcctatacc 300 ttgttcttga aggattgtat ccttttgttc aaggcgaaga aacagagaac caccactgaa 360 atcgggtttg gacaaacccc tgctagaaac caggatcatc ctcaaccata ggcggggtcc 420 atcatgtcta ctgtgacgtg gggtaggaag cggaagcgta gcggaggaga atcaaaggcg 480 aagagtaggg catctggttc ctatgtgccc agatctgtgt catccaggag ggaatcattg 540 caggtggcaa ccttttcctg gacgagttct ggatcgggta tcaagttctc agctggtggt 600 gctgcctacc tgataagcaa ctttccacag ggtgccaatg ataactgtcg tcacaccaac 660 aagactgtgt tatacaaatt catgtctaag aacacagtgt atctggatcc tagccactat 720 tcgaaggtgt ttaggtgtcc atttactttt tggctggtgt acgacaagtc tcctggaccc 780 aatgttccta gtactgggga catctttgaa ggcccatctc tgttccctaa caatccatgg 840 acttggactg tgtctagggc ttcctgtcat cgttttgttg taaaaaaaac gtggacatgt 900 atggtggaga gcaatggtat agacccaggt aaggcccaag gatctacata ctatgggcct 960 ggaccttgta accagattaa gtcctgcaat aagttcttta agagactggg tgtgtccaca 1020 gagtggaaga attctgcaac gggtgatgtt ggtgacataa aggaaggagc cctttatatt 1080 gtaggtgctc cttcccagaa atctgatgta tatgtaaatg ggtatttcag agtgtacttc 1140 aagtctgttg gaaatcaata aaattatttt attatgaata ttttacattg tgcaagtagg 1200 tagaaattac ataatctgca atacacatga aatttccaaa aaaccccccc taaaaaaaca 1260 tcaaaaaaac gggcccaaaa cataacacta taatccctcg tctgaggaga ggcacgttca 1320 gtgactcgac gattgccgag caaaaaaagt ctccccgtca tacatatagt gggtgatgca 1380 gttttcttca aagtaatcct tctgttgact tgacattgag gccatccagt cttcatctgg 1440 attacaaagg ataattgaag ggatcccacc ttttattttc ttcttttttc catacttagg 1500 gttgacagta aaatctaact gacaacctat taattgcttc cacaatggga cgaacttgaa 1560 ggggatgtcg tcgatgacat tgtatgtggc atgttcatca tatgtggtga agtcgatggt 1620 cccattccag tagttgtgtc gtccgagact tctagcccag gtggtcttac cggtacgagt 1680 tggtccgcag atgtagaggc tggggtgtct ggttccagcc cttccctcgt cctggttata 1740 tcagccatcc attcaaggtc agtcttagct tgttcataag taactggatg gacaagagta 1800 taggcgtcga tgcttacatg gtagaggtgt gtgtctctcc atgaggccag atcttcatgg 1860 cagcgtagtt ctgactcagt gaagggcgac acatatggtt ctggctgtgg aggaaatagt 1920 ttattggctg aatattccag ccattggagc tttgttgccc attcatgagg aaattcatcc 1980 ttaatcatgt taaggtactc ctccttagac gtcgcagtct ggataatagt tctccatcgt 2040 gcgtcagatt tgcgaggaga gaccttatga tctctgaaat ctcctctggt tttaatatct 2100 ccgtcctttg atatgtagtc aaggacctgt ttagagtttc tagctggttg gatattaggg 2160 tgatttccct caaaatcaaa aaaagaagcg tccctaatac aaggcttttt atcaagctgg 2220 acaagagcat gatagtgggt agtgccatct tgatgaagct cagtagcaac accaaggaag 2280 aaaataagaa aaggtgtgag tttctgccag agaaactcga atagatcatc tctttgagat 2340 gagcacttag gataggtaag gaaaacatat ttagattgga gtctgaagtt catgctagca 2400 gaaggcattt ttgttgtgac tccttgggtt gcctcaaact ctatcttata accaggcgtg 2460 gaggcatgga ggcaggggta tttcagtaat tgaagttggt cagtggaata tgatgtggca 2520 tttccttact gattaagtaa aagataaggg gggacccacg ccgcattaat att 2573 //