ID AM933134; SV 1; circular; genomic DNA; STD; VRL; 2572 BP. XX AC AM933134; XX DT 22-JAN-2008 (Rel. 94, Created) DT 04-APR-2013 (Rel. 116, Last updated, Version 3) XX DE Chickpea chlorotic dwarf virus complete genome, clone CpCDSV_Nhe5 XX KW complete genome. XX OS Chickpea chlorotic dwarf virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2572 RA Gronenborn B.; RT ; RL Submitted (10-JAN-2008) to the INSDC. RL Gronenborn B., Institut des Sciences du Vegetal, Centre National de RL Recherche Scientifiqu, Gif sur Yvette, 91198, FRANCE. XX RN [2] RA Timchenko T., Hassan M.M., Hamed A.M., Dafalla G.A., Vetten H.-J., RA Gronenborn B.; RT "Molecular characterization of chickpea chlorotic dwarf virus from Sudan"; RL Unpublished. XX RN [4] RA Hassan M.M.; RT "Epidemiology & Molecular Characterization of Chickpea Chlorotic Dwarf RT Virus from Sudan"; RL Thesis (2000), Phytopathology Centre, Faculty of Agricultural Sciences, RL University of Gezira, Wad Medani, Sudan. XX DR MD5; c00b14272c5880fdd908126c4359544a. XX FH Key Location/Qualifiers FH FT source 1..2572 FT /organism="Chickpea chlorotic dwarf virus" FT /host="Cicer arietinum" FT /mol_type="genomic DNA" FT /country="Sudan:Abu Haraz" FT /isolation_source="Cicer arietinum" FT /collected_by="Mahmoud M. Hassan" FT /collection_date="1997" FT /clone="CpCDSV_Nhe5" FT /tissue_type="leaves" FT /db_xref="taxon:463360" FT misc_feature <1..132 FT /note="large intergenic region (LIR)" FT CDS 133..411 FT /gene="V1" FT /product="movement protein" FT /db_xref="GOA:B0BL26" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B0BL26" FT /protein_id="CAP69807.1" FT /translation="MERILFQVFPSYTNYSYDPVPETAAPQASSQTDFGKVVIALVVIL FT VSVGVFYLAYTLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPQP" FT CDS 424..1161 FT /gene="V2" FT /product="capsid protein" FT /db_xref="GOA:B0BL27" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B0BL27" FT /protein_id="CAP69808.1" FT /translation="MSTVTWGRKRKRSGGESKAKSRASSSYVPRSVSSRRESLQVATFS FT WTSSGSGIKFSAGGAAYLISNFPQGANDNCRHTNKTVLYKFMSKNTVYLDPSHYSKVFR FT CPFTFWLVYDKSPGANVPSTGDIFEGPSLFPNNPWTWTVSRASCHRFVVKKTWTCMVES FT NGIDPGKAQGSTYYGPGPCNQIKSCNKFFKRLGVSTEWKNSATGDVGDIKEGALYIVGA FT PSQKSDVYVNGYFRVYFKSVGNQ" FT misc_feature 1162..1317 FT /note="small intergenic region (SIR)" FT CDS complement(join(1318..1731,1818..2408)) FT /gene="C1:C2" FT /product="replication initiator protein (Rep)" FT /db_xref="GOA:B0BL28" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B0BL28" FT /protein_id="CAP69809.1" FT /translation="MPSASTNFRLQSKYVFLTYPKCSSQRDDLFEFLWQKLTPFLIFFL FT GVATELHQDGTTHYHALVQLDKKPCIRDASFFDFEGNHPNIQPARNSKQVLDYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLNMIKDEFPHEWATKLQWLEYSANK FT LFPPQPEPYVSPFTESDLRCHEDLASWRDTHLYHDEGRAGTRHPSLYICGPTRTGKTTW FT ARSLGRHNYWNGTIDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQLDFTVNPKYGKKK FT KIKGGIPSIILCNPDEDWMASMSSQQKDYFEENCITHYMYDGETFFARQSSSH" FT exon complement(1318..1731) FT /gene="C1:C2" FT /number=2 FT CDS complement(1530..2408) FT /gene="C1" FT /product="replication associated protein (RepA)" FT /db_xref="GOA:B0BL29" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B0BL29" FT /protein_id="CAP69810.1" FT /translation="MPSASTNFRLQSKYVFLTYPKCSSQRDDLFEFLWQKLTPFLIFFL FT GVATELHQDGTTHYHALVQLDKKPCIRDASFFDFEGNHPNIQPARNSKQVLDYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLNMIKDEFPHEWATKLQWLEYSANK FT LFPPQPEPYVSPFTESDLRCHEDLASWRDTHLYHVSIDAYTLVHPVTYEQAKTDLEWMA FT DITRTREGLEPDTPASTSADQLVPVRPPGLEVSDDTTTGMGPSTSPHMMNMPHTMSSTT FT SPSSSSHCGSN" FT intron complement(1732..1817) FT /gene="C1:C2" FT /number=1 FT exon complement(1818..2408) FT /gene="C1:C2" FT /number=1 FT misc_feature 2409..>2572 FT /note="large intergenic region (LIR)" XX SQ Sequence 2572 BP; 691 A; 515 C; 622 G; 744 T; 0 other; accggcgtgg ccccccctta tcgcgagtgc tttagcacga gcggttcaga ttgaatttga 60 aaaagttccc gcccactagg gtttgctttt gcttttgctt tataaaaggc gcactacatt 120 gtagagcgta tcatggaacg tattttgttt caggtatttc cgtcgtatac gaactattca 180 tacgaccctg ttccagagac tgctgctcca caggcatcat ctcaaacgga tttcggtaag 240 gtggttatcg ccttggtggt tattctggtt agtgttggtg tgttctatct ggcctatacc 300 ttgttcttga aggattgtat cctcttgttc aaggcgaaga aacagagaac caccacagaa 360 atcgggtttg gacaaacccc tgctagaaac caggatcatc ctcaaccata ggcggggtcc 420 atcatgtcta ctgtgacgtg gggtaggaag cggaagcgta gcggaggaga atcaaaggcg 480 aagagtaggg catctagttc ctatgtgccc agatctgtgt catccaggag ggaatcattg 540 caggtggcaa ccttttcctg gacgagttct ggatcgggta tcaagttctc agctggtggt 600 gctgcctacc tgataagcaa ctttccacag ggtgccaatg ataactgtcg tcacaccaac 660 aagactgtgt tatacaaatt catgtctaag aacacagtgt atctggatcc tagccactat 720 tctaaggtgt ttaggtgtcc atttactttt tggctggtgt acgacaagtc tcctggagcc 780 aatgttccta gtactgggga catctttgaa ggcccatctc tgttccctaa caatccatgg 840 acttggactg tgtctagggc ttcctgtcat cgttttgttg taaaaaaaac gtggacatgt 900 atggtggaga gcaatggtat agacccaggt aaggcccaag gatctacata ctatgggcct 960 ggaccttgta accagattaa gtcctgcaat aagttcttta agagactggg tgtgtccaca 1020 gagtggaaaa atagtgcaac gggtgatgtt ggtgacataa aggaaggagc cctttacatt 1080 gtaggtgctc cttcccagaa atctgatgta tatgtaaatg ggtatttcag agtgtacttc 1140 aagtctgttg gaaatcaata aaattatttt attatgaata ttttacattg tgcaagtagg 1200 tagaaattac ataatctgca atacacatga aattaccaaa aaaacccccc taaaaaaaca 1260 tcaaaaaaac gggcccaaaa cataacacta taatccctcg tctgaggaga ggcacgttca 1320 gtgactcgac gattgccgag caaaaaaagt ctccccgtca tacatatagt gggtgatgca 1380 gttttcttca aagtaatcct tctgttgact tgacattgag gccatccagt cttcatctgg 1440 attacaaagg ataattgaag ggatcccacc ttttattttc ttcttttttc catacttagg 1500 gttgacagta aaatctaact gacaacctat taattgcttc cacaatggga cgaacttgaa 1560 ggggatgtcg tcgatgacat tgtatgtggc atgttcatca tatgtggtga agtcgatggt 1620 cccattccag tagttgtgtc gtccgagact tctagcccag gtggtcttac cggtacgagt 1680 tggtccgcag atgtagaggc tggggtgtct ggttccagcc cttccctcgt cctggttata 1740 tcagccatcc attcaaggtc agtcttagct tgttcataag taactggatg gacaagagta 1800 taggcgtcga tgcttacatg gtagaggtgt gtgtctctcc atgaggctag atcttcatgg 1860 cagcgtagat ctgactcagt gaagggcgac acatatggtt ctggctgtgg aggaaatagt 1920 ttattggctg aatattccag ccattggagc tttgttgccc attcatgagg aaattcatcc 1980 ttaatcatgt taaggtactc ctccttagac gtcgcagtct ggataatagt tctccatcgt 2040 gcgtcagatt tgcgaggaga gaccttatga tctctgaaat ctcctctggt tttaatatct 2100 ccgtcctttg atatgtagtc aaggacctgt ttagagtttc tagctggttg gatattaggg 2160 tgatttccct caaaatcaaa aaaagaagcg tccctaatac aaggcttttt atcaagctgg 2220 acaagagcat gatagtgggt agtgccatct tgatgaagct cagtagcaac accaaggaag 2280 aaaataagaa aaggtgtgag tttctgccag agaaactcga atagatcatc tctttgagat 2340 gagcacttag gataggtaag gaaaacatat ttagattgga gtctgaagtt cgtgctagca 2400 gaaggcattt tgttgtgact ccttgggttg cctcaaactc tatcttataa ccaggcgtgg 2460 aggcatggag gcaggggtat ttcagtaatt gaagttggta aatggaatat gatgtggcat 2520 ttccttacag agtaagtaaa agataagggg ggacccacgc cgcattaata tt 2572 //