ID   AM922263; SV 1; circular; genomic DNA; STD; VRL; 1894 BP.
XX
AC   AM922263;
XX
DT   14-DEC-2008 (Rel. 98, Created)
DT   14-DEC-2008 (Rel. 98, Last updated, Version 1)
XX
DE   Barley dwarf virus complete genome defective form, isolate SA43Ecogr15
XX
KW   .
XX
OS   Barley dwarf virus
OC   Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes;
OC   Geplafuvirales; Geminiviridae; Mastrevirus; Wheat dwarf virus.
XX
RN   [1]
RP   1-1894
RA   Schubert J.;
RT   ;
RL   Submitted (10-DEC-2007) to the INSDC.
RL   Schubert J., Institute of Resistance Research, Federal Centre for Breeding
RL   Research, Erwin-Baur-Str. 27, D-06484 Quedlinburg, GERMANY.
XX
RN   [2]
RA   Schubert J., Habekuss A., Qui Y., Zhou X.;
RT   "Appearance of defective forms of Barley dwarf virus";
RL   Unpublished.
XX
DR   MD5; 3953ea7b3fa7c615ace47ae528324aad.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1894
FT                   /organism="Barley dwarf virus"
FT                   /isolate="SA43Ecogr15"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Saxony-Anhalt Petersdorf"
FT                   /isolation_source="Hordeum vulgare"
FT                   /collected_by="A. Habekuss"
FT                   /collection_date="12-Mar-2007"
FT                   /identified_by="J. Schubert"
FT                   /db_xref="taxon:497862"
FT   misc_feature    join(1660..1894,1..128)
FT                   /function="bidirectional promoter"
FT                   /note="long intergenic region"
FT                   /note="contains deletion"
FT   CDS             129..196
FT                   /pseudo
FT                   /gene="v1"
FT                   /note="5'-truncated coat protein"
FT   CDS             197..358
FT                   /gene="v2"
FT                   /product="hypothetical protein"
FT                   /function="defective coat protein"
FT                   /db_xref="GOA:B7FDD2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:B7FDD2"
FT                   /protein_id="CAP58250.1"
FT                   /translation="MNTGDGKIGDIKKGALYLVTCTRGGITGDSASISFEVVCAYTHAC
FT                   YFKSIGIQ"
FT   misc_feature    359..529
FT                   /function="promoter"
FT                   /note="short intergenic region"
FT   CDS             complement(join(530..943,1030..1659))
FT                   /gene="rep"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:B7FDD3"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:B7FDD3"
FT                   /protein_id="CAP58251.1"
FT                   /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY
FT                   IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFTFFHPNIQAAKDCNQVR
FT                   DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW
FT                   SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNEHLYSESPGRHKSIYIC
FT                   GPTRTGKTSWARSLGIHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF
FT                   TVNPKYGKRKMIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVIHYMYEGESFFAFG
FT                   ENVTASQ"
FT   exon            complement(530..943)
FT                   /gene="rep"
FT                   /number=2
FT   CDS             complement(865..1659)
FT                   /gene="repA"
FT                   /product="replication associated protein a"
FT                   /db_xref="GOA:B7FDD4"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:B7FDD4"
FT                   /protein_id="CAP58252.1"
FT                   /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY
FT                   IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFTFFHPNIQAAKDCNQVR
FT                   DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW
FT                   SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNEHLYSVSLESYILCTST
FT                   PADKAVTDLEWMDDYSRSHRDGISPSTSAVRQEQERLPGQDL"
FT   intron          complement(944..1029)
FT                   /gene="rep"
FT                   /number=1
FT   exon            complement(1030..1659)
FT                   /gene="rep"
FT                   /number=1
XX
SQ   Sequence 1894 BP; 487 A; 404 C; 500 G; 503 T; 0 other;
     accctgcgtg gtgggtccga ggcgcactcg gcttttcgtg agtgcgccga ggcttttgga        60
     ccacgtcttt atgtcatcac atcaattatt gttggtgagt catcacatat tccacctgca       120
     attatgtgtc gtagtgggga agaatatcgt tgacgcctcc aagttcgtga agggtttacg       180
     cgtgacgacg gagtggatga acacgggtga cggcaagata ggcgatatta agaagggtgc       240
     cctgtaccta gtaacctgta ctcgtggagg aatcactggt gacagtgcct ccatttcatt       300
     cgaagttgta tgtgcctata cgcacgcgtg ttacttcaaa tccattggga ttcaataaat       360
     aaaatagtat tttattcatc tcatgtcatt cgattacaga tgctcggcta cgagcaaaga       420
     taaaccaaac tatgacatac aacacactca taaccaaaac atcgaaaaaa taaatacaag       480
     gggcgagatc acacaatttt agaaaccgta gccgtccgcg ctaggacagt cactgcgaag       540
     cagtgacatt ttcgccgaag gcgaagaatg attcaccctc atacatataa tgtatcacag       600
     cgttagagta catgtaatcc gactgttcag gagtcatatc cttgagccaa tcttcgtctg       660
     ggttaactaa aatgatgcaa ggtataccac cccgtatcat ttttcgcttc ccgtacttag       720
     gattgacggt gaagtcacgc tgagccccga cgaagcactt ccagtttggc gtgaacttga       780
     atggaatgtc gtcaattatg ttgtacttgg cgttgacgtc ataggtcgtg aaatcaacta       840
     ggctgttgta gtagttgtgg atccctagag atcttgccca ggaagtcttt cctgttcttg       900
     tcggaccgca gatgtagatg gacttatgcc gtcccggtga ctcctggaat aatcgtccat       960
     ccactctaaa tcagttacgg ccttatccgc aggagtggaa gtacaaagga tgtatgattc      1020
     gaggcttacg gagtatagat gttcattttt ccagctttca atggtctcat gacacatgag      1080
     ggactcgatg ggaaactcag gtgtgtaagt gctaactggg tctgggaata ggtggcgtgc      1140
     agtgtattcg aagtctttca gacggataga ccattcaaat ggaaaacgat ggcagaccat      1200
     gctgagaaat tcctctctcg aggtactcga ctcaatgatc tgtttcatat ccgcgtctcg      1260
     gtctttacga cccggagtgg taactgctac gaatgttccc cactcagccg tgttgacatc      1320
     ggagtcaacc tccttcatga tgtaatcacg aacttggttg cagtctttgg cagcttgaat      1380
     gttaggatga aaaaatgtaa atggtgatgt gttcatacca atgttgagag cattgggatt      1440
     ggtgatggaa gcacgaagct tgttttgcac gagtacgtgc agatgtggtg atccatcttc      1500
     gtggagttcc ctaactgcag ctatgtacag aggttcatat ttggccaaga gagtgcgaag      1560
     agagtccaag gcgtactgtg gctctaggat gcattgagga tatgttagga agaggtattt      1620
     ggaatagaca cggaacctgg gtgcagatga agaggccata gtagcaagca gaagcccggc      1680
     aggtccttag cgaaaaaacg gggtgtgctc gcgaactcta ctctctaccc tgcgtgggag      1740
     tgtgcagaat tcacaccgat gggctcggtg tccacggttt aaatattgca ggtttaggtg      1800
     ggaacgcggg accctgtctt ttcggcgcga aagcgacggg tggtcccgcg tgtggtttgt      1860
     ggctcgggga cccgccacgc aggaatctaa tatt                                  1894
//