ID   AM921994; SV 1; circular; genomic DNA; STD; VRL; 2735 BP.
XX
AC   AM921994;
XX
DT   14-DEC-2008 (Rel. 98, Created)
DT   04-APR-2013 (Rel. 116, Last updated, Version 2)
XX
DE   Wheat dwarf virus complete genome, isolate SA6PstFL1
XX
KW   complete genome.
XX
OS   Wheat dwarf virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2735
RA   Schubert J.;
RT   ;
RL   Submitted (06-DEC-2007) to the INSDC.
RL   Schubert J., Institute of Resistance Research, Federal Centre for Breeding
RL   Research, Erwin-Baur-Str. 27, D-06484 Quedlinburg, GERMANY.
XX
RN   [2]
RA   Schubert J., Habekuss A., Qui Y., Zhou X.;
RT   "Appearance of defective forms of Barley dwarf virus";
RL   Unpublished.
XX
DR   MD5; 1dfeb78a207fa2e17a2f6a30da24ad34.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2735
FT                   /organism="Wheat dwarf virus"
FT                   /isolate="SA6PstFL1"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Saxony-Anhalt, Zappendorf"
FT                   /isolation_source="Hordeum vulgare"
FT                   /collected_by="A. Habekuss"
FT                   /collection_date="12-Mar-2007"
FT                   /identified_by="J. Schubert"
FT                   /db_xref="taxon:10834"
FT   misc_feature    join(2501..2735,1..172)
FT                   /function="bidirectional promoter"
FT                   /note="long intergenic region"
FT   CDS             173..445
FT                   /gene="v1"
FT                   /product="transport protein"
FT                   /db_xref="GOA:Q5K2S1"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:Q5K2S1"
FT                   /protein_id="CAP57986.1"
FT                   /translation="MDQVFTPPRSIRADQYQAPYDPGSSDYAWRTFVFVSFGLLISVGV
FT                   VWLAYTLFLKDCILVWKAKKQRRTEEIGYGNTPARPNGDQQGLPR"
FT   CDS             417..1199
FT                   /gene="v2"
FT                   /product="coat protein"
FT                   /db_xref="GOA:A6GVG4"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:A6GVG4"
FT                   /protein_id="CAP57987.1"
FT                   /translation="MVTNKDSRGKGKRKLEEGESSGRWKGQVYKRRKQTYKVVPVRPPA
FT                   LCVYRYNWLNSDKTNIVVGNTPRIDLITCFAAGKADNNRHTNQTILYKFNLQGTCYVSD
FT                   SSCMFITPIRVYHWLVYDAEPKQATPDSTDIFTMPWNLLPSSWTVQRAWSHRFVVKRKW
FT                   CVNLVSDGRKVGSKTVDSRYNYVVGKNIVDASKFVKGLRVTTEWMNTGDGKIGDIKKGA
FT                   LYLVTCTRGGITGDSASISFEVVCAYTHACYFKSIGIQ"
FT   regulatory      1200..1370
FT                   /note="short intergenic region"
FT                   /regulatory_class="promoter"
FT   CDS             complement(join(1371..1784,1871..2500))
FT                   /gene="rep"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:B7FDA9"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:B7FDA9"
FT                   /protein_id="CAP57988.1"
FT                   /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY
FT                   IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR
FT                   DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW
FT                   SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNEHLYSESPGRHKSIYIC
FT                   GPTRTGKTSWARSLGIHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF
FT                   TVNPKYGKRKMIRGGIPCIILGQPDEDWLKDMTPEQSDYMYSNAVIHYMYEGESFFAFG
FT                   ENVTASQ"
FT   exon            complement(1371..1784)
FT                   /gene="rep"
FT                   /number=2
FT   CDS             complement(1706..2500)
FT                   /gene="repA"
FT                   /product="replication associated protein A"
FT                   /db_xref="GOA:A6GVG6"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:A6GVG6"
FT                   /protein_id="CAP57989.1"
FT                   /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY
FT                   IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR
FT                   DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW
FT                   SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNEHLYSVSLESYILCTST
FT                   PADKAVTDLEWMDDYSRSHRDGISPSTSAVRQEQERLPGQDL"
FT   intron          complement(1785..1870)
FT                   /gene="rep"
FT                   /number=1
FT   exon            complement(1871..2500)
FT                   /gene="rep"
FT                   /number=1
XX
SQ   Sequence 2735 BP; 690 A; 601 C; 746 G; 698 T; 0 other;
     accctgcgtg gtgggtcccg aggcgcactc ggcttttcgt gagtgcgccg aggctttttg        60
     gaccacgtct ttatgtcatc acatcaatta ttgttggtga gtcatcacat attccacctg       120
     caattatgtg ccatcgctta gcttataagg aagtgtcggg gaaggtttct cgatggatca       180
     ggtctttaca ccgccgcgtt ctatacgggc agatcaatac caggcccctt acgatcccgg       240
     gtcctccgac tacgcctggc ggacctttgt gttcgtctcc ttcggtttgt taatatccgt       300
     aggagttgtt tggttggctt acactctgtt cttgaaggac tgcatattag tgtggaaggc       360
     gaagaagcag aggaggaccg aggaaattgg ttacggtaat acaccggcca gaccaaatgg       420
     tgaccaacaa ggactcccga ggtaagggaa agaggaagct cgaggagggc gaatcgagtg       480
     gaaggtggaa ggggcaagtg tataagcggc gtaagcagac ctacaaggta gtacctgtga       540
     ggccacccgc cctgtgtgtg tatcggtata actggctcaa ttcagacaag accaatatcg       600
     tggtgggtaa cacccctcgg attgatctga ttacctgctt tgcagcgggc aaggccgata       660
     ataatcggca tacaaatcag accatcctct acaagtttaa cctacagggg acctgttacg       720
     tgtcggactc ctcatgtatg ttcataaccc caatcagggt ttatcactgg ttggtctatg       780
     atgcagagcc gaagcaggct acgcctgact ccactgacat ctttacgatg ccttggaatc       840
     tgctgccgag ttcatggact gtgcagaggg cttggtcgca tcggttcgtg gtgaagagga       900
     agtggtgcgt gaacctggtc tccgatggaa ggaaggttgg atccaagacg gtggactccc       960
     gctacaacta cgtagtgggg aagaatatcg ttgacgcctc caagttcgtg aagggtttgc      1020
     gcgtgacgac ggagtggatg aacacgggtg acggcaagat aggcgatatt aagaagggtg      1080
     ccctgtatct agtaacctgt actcgtggag gtatcactgg agacagtgcc tccatttcat      1140
     tcgaagttgt atgtgcctat acgcacgcgt gttacttcaa atccattggg attcaataaa      1200
     taaaatagta ttttattcat ctcatgtcat tcgattacag atgctcggct acgagcaaag      1260
     ataaaccaaa ctatgacata caacacactc ataaccaaaa catcgaaaaa agaaatacaa      1320
     ggggcgagat cacacaattt tagaaaccgt agccgtccgc gctaggacag tcactgcgaa      1380
     gcagtgacat tttcgccgaa ggcgaagaat gattcaccct catacatata atgtatcaca      1440
     gcgttagagt acatgtaatc cgactgttca ggagtcatat ccttgagcca atcttcgtct      1500
     ggctgaccta aaatgatgca aggtatacca ccccgtatca tttttcgctt cccgtactta      1560
     ggattgacgg tgaagtcacg ctgagccccg acgaagcact tccagtttgg cgtgaacttg      1620
     aatggaatgt cgtcaattat gttgtacttg gcgttgacgt cataggtcgt gaaatcaact      1680
     aggctgttgt agtagttgtg gatccctaga gatcttgccc aggaagtctt tcctgttctt      1740
     gtcggaccgc agatgtagat ggacttatgc cgtcccggtg actcctggaa taatcgtcca      1800
     tccactctaa atcagttacg gccttatccg caggagtgga agtacaaagg atgtatgatt      1860
     cgaggcttac ggagtagaga tgttcatttt tccagctttc aatggtctca tgacacatga      1920
     gggactcgat gggaaactca ggtgtgtaag tgctaactgg gtctgggaat aggtggcgtg      1980
     cagtgtattc gaagtctttc agacggatag accattcaaa cggaaaacga tggcagacca      2040
     tgctgagaaa ttcctctctc gaggtactcg actcaatgat ctgtttcata tccgcgtctc      2100
     ggtctttacg acccggagtg gtaactgcta cgaatgttcc ccactcagcc gtgttgacat      2160
     cggagtcaac ctccttcatg atgtaatcac gaacttggtt gcagtctttg gcagcttgaa      2220
     tgttaggatg aaaaaatgaa aatggtgatg tgttcatacc aatgttgaga gcattgggat      2280
     tggtgatgga agcacgaagc ttgttttgca cgagtacgtg cagatgtggt gatccatctt      2340
     cgtggagttc cctaactgca gctatgtaca gaggttcata tttggccaag agagtgcgaa      2400
     gagagtccaa ggcgtactgt ggctctagga tgcattgagg atatgttagg aagaggtatt      2460
     tggaatagac acggaacctg ggtgcagatg aagaggccat agtagcaagc agaagcccgg      2520
     caggtcctta gcgaaaaaac ggggtgtgct cgcgaactct actctctacc ctgcgtggga      2580
     gtgtgcagaa ttcacaccga tgggctcggt gtccacggtt taaatattgc aggtttaggt      2640
     gggaacgcgg gaccctgtct tttcggcgcg aaagcgacgg gtggtcccgc gtgtggtttg      2700
     tggctcgggg acccgccacg caggaatcta atatt                                 2735
//