ID AM884015; SV 2; circular; genomic DNA; STD; VRL; 2756 BP. XX AC AM884015; XX DT 04-JUN-2008 (Rel. 96, Created) DT 07-OCT-2008 (Rel. 97, Last updated, Version 2) XX DE Tomato leaf curl Palampur virus complete sequence, isolate India XX KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AC4 protein; AC5 gene; AC5 protein; KW AV1 gene; AV2 gene; coat protein; pre-coat protein; KW replication enhancer protein; replication initiator protein; KW transcriptional activator protein. XX OS Tomato leaf curl Palampur virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC revised by author [02-JUN-2008] RP 1-2756 RA Kumar Y.; RT ; RL Submitted (07-SEP-2007) to the INSDC. RL Kumar Y., Floriculture, Institute of Himalayan Bioresource Tech., IHBT, RL Palampur, Himachal Pradesh 176061, INDIA. XX RN [2] RX DOI; 10.1007/s11262-008-0286-1. RX PUBMED; 18792773. RA Kumar Y., Hallan V., Zaidi A.A.; RT "Molecular characterization of a distinct bipartite begomovirus species RT infecting tomato in India"; RL Virus Genes 37(3):425-431(2008). XX DR MD5; a032a0e212accf39a4997c1cea56fc37. DR EuropePMC; PMC3120783; 21496256. DR EuropePMC; PMC3125359; 21676270. DR EuropePMC; PMC3550709; 23637491. DR EuropePMC; PMC3723865; 28324587. DR EuropePMC; PMC5747847; 29291230. DR EuropePMC; PMC5775426; 29352245. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Tomato leaf curl Palampur virus" FT /host="Solanum lycopersicum" FT /isolate="India" FT /mol_type="genomic DNA" FT /country="India:Himachal Pradesh" FT /collected_by="Yogesh Kumar" FT /collection_date="30-Dec-2006" FT /identified_by="Yogesh Kumar" FT /tissue_type="leaf" FT /db_xref="taxon:526476" FT CDS 120..485 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:B3CJQ8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B3CJQ8" FT /protein_id="CAP03292.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLKEIEKTYSPDTIGYDLVRDL FT ISVVRARNYGEASSRYLHFNARIESTPSSELRQPVCCPCSCPYCPRHKGKGMGEQTHEP FT ETKILPDVSKLGRAQGL" FT CDS 280..1050 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:B3CJQ9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B3CJQ9" FT /protein_id="CAP03293.1" FT /translation="MVKRPADIYISTPASKARRRLNFDSPYAVRAAVPIVRATKAREWV FT NRPMNRKPRFYRMYRSSDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLKKWHSTVTGGTYASKEQALVKRFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHPSNPVYATLKIRIYFYDSVTN" FT CDS complement(310..795) FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:B3CJR0" FT /protein_id="CAP03294.1" FT /translation="MHILNSGSARFVVEHIKNFAEILWRTRRSTITHQEKHHTIRVVLG FT LDILVHPDLAKHVDGLHTESLSDAMCETGSTGNVANTHHLTNMGDIVPGFKRLHLTWAF FT TAPGHVRASIHPVKSWFPVHGSVHPFPCLCGADNRDSCTDSIRAVEVQTTACFRCGR" FT CDS complement(1047..1457) FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:B3CJR1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B3CJR1" FT /protein_id="CAP03295.1" FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKILKHDERPCLTNH FT DIITVQIQFNHNLRKALGLHKCFLTFQIWTGLRPQTGRFLRVFKTQVLKYLDMLGVVGI FT NNVIRAAYHVLDNVLQRTVDVWATYDVKLNTY" FT CDS complement(1177..1596) FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:B3CJR2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B3CJR2" FT /protein_id="CAP03296.2" FT /translation="MQSSLHSRDHSIPVAKTSLPKKKKKNIRRRRVDLQCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRVYLGRSKSPVFQNFETRRETLPHEPRHYNSPNTVQPQP FT EESTGASQVFSNIPDLDGLTPSDWAFLESFQNPGP" FT CDS complement(1499..2602) FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:B3CJR3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B3CJR3" FT /protein_id="CAP03297.2" FT /translation="MAPPTRFRINAKNYFLTYPKCSLTKEEALSQLQNLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVAPSRSAHFHPNIQGAKSASDVKTYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH FT NLMTNLDRIFPSRIEVYRSPFTVSSFDRVPPELVDWVSSNLRCSAARPFSAALPIRPIG FT LVLEGDSRTGKTMWARSLGPHNYLCGHLDLNPRVYSNDAWYNVIDDVDPHYLKHFKEFM FT GAQRDWQSNTKYGKPMMIKGGIPTIFLCNKGPQSSYKEFLDEEKNAALKQWALKNAVFI FT TLEGPLYSGRENVAPQEEEEEHPQETS" FT CDS complement(2269..2445) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B3CJR4" FT /protein_id="CAP03298.1" FT /translation="MGLRISMFSSNLKENSSAKITDSSTWLPQVGQHISIRTFRELNQR FT QMSRHTSTKTETF" XX SQ Sequence 2756 BP; 740 A; 599 C; 610 G; 807 T; 0 other; accgaatggc cgcggtgcct tttgtgtggg tccagaacca atgaaattcg agatacatgg 60 cttatttaat gcgtggggac caataaatag acttgctcac caagcttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttcctg aaagcgttca tggtcttagg tgcatgctag 180 ctgtaaaata tctcaaagag atagaaaaga cctactctcc ggacacaatc ggatacgatc 240 ttgttcgtga cctaatctct gtcgtccgtg ccagaaacta tggtgaagcg tccagcagat 300 atctacattt caacgcccgc atcgaaagca cgccgtcgtc tgaacttcga cagcccgtat 360 gctgtccgtg cagctgtccc tattgtccgc gccacaaagg caagggaatg ggtgaacaga 420 cccatgaacc ggaaaccaag attttaccgg atgtatcgaa gctcggacgt gcccaggggc 480 tgtgaaggcc catgtaaggt gcaatctttt gaatccaggc acgatgtctc ccatattggt 540 aaggtgatgt gtattagcga cgttacccgt ggaaccggtc tcacacatcg cgtcggaaag 600 cgattctgtg tgaagtccgt ctacgtgctt ggcaagatct ggatggacga gaatatcaag 660 accaagaacc acacgaatag tgtgatgttt ttcttggtgc gtgatcgtcg acctacgggt 720 gcgccacaag atttcggcga agtttttaat atgttcgaca acgaacctag cactgccact 780 gttaagaata tgcatcgtga tcgatatcaa gtgctcaaaa aatggcattc gactgtgacg 840 ggaggaacat acgcgtcgaa ggaacaagca ttagttaaac gttttattag agttaataat 900 tacgttgtat ataatcaaca agaggccggc aagtatgaga atcatactga aaatgcatta 960 atgttgtata tggcctgtac tcatccatca aatcctgtat atgcgacttt aaaaatccgg 1020 atctattttt atgattcggt aacaaattaa tatgtattaa gttttacatc atatgttgcc 1080 catacatcaa ctgttctttg caatacattg tctaatacat gataagctgc tcttattaca 1140 ttattaattc caacaacacc taacatatcg aggtacttaa ggacctgggt tttgaaaact 1200 ctcaagaaac gcccagtctg agggcgtaag cccgtccaga tctggaatgt tagaaaacac 1260 ttgtgaagcc ccagtgcttt cctcaggttg tggttgaact gtatttggac tgttataatg 1320 tcgtggttcg tgaggcaagg tctctcgtcg tgtttcaaaa ttttgaaata caggggattt 1380 ggaacgtccc agatatacac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatgtaatac gaacaaccac actgcaaatc 1500 aactcgtctc ctgcggatgt tcttcttctt cttcttgggg agcgacgttt tcgcgaccgg 1560 aatagagtgg tccctcgagt gtaatgaaga ctgcattctt caatgcccac tgtttcagtg 1620 ctgcattctt ttcttcgtcc aagaattctt tatagctgct ttgtggtcct ttattgcaca 1680 agaagatagt gggaatgccg cctttaatca tcatcggctt tccgtatttt gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccaa gcatcgttac tgtaaaccct agggtttaga tccaagtgac 1860 cgcacaagta attgtggggt cccaaactac gcgcccacat tgttttgccc gtacgactat 1920 cgccctccaa tactaaccct atgggtctaa tcgggagcgc agcggaaaaa ggccgcgcag 1980 cggaacacct caaatttgac gacacccaat cgacgagttc tggcggaact ctgtcgaagg 2040 acgaaacagt aaatggcgaa cgataaactt cgattcgaga aggaaaaatc cgatctaaat 2100 ttgtcattaa attgtgaaac tgcaacacat aatcttttgg tgctaattct tttagcacct 2160 tcaatgcgtc ttctttattt ccagtattaa ttgcttgtgc gtatgcatcg ttagctgttt 2220 gttgaccacc acgagcagat cgtccatcga tctggaaaac accccactct aaaacgtctc 2280 cgtctttgtc gatgtatgtc ttgacatctg acgctgattt agctccctga atgttcggat 2340 ggaaatgtgc tgaccgactt ggggcaacca agtcgaagaa tctgttattt ttgcactgga 2400 attttccttc aaattggatg agaacatgga tatgcggaga cccatcttcg tgaagctctc 2460 tgcagatttt tatgaatttc tttgatgtag gggtttctag gttttgtaat tgggaaagtg 2520 cctcttcttt agttagagag cactttggat atgtaaggaa atagtttttt gcatttattc 2580 tgaaacgagt tggcggagcc ataaacctcg tatttccaac cggtgtctct caacttcttg 2640 tattatattg gtgtctgggg tcctatatat acataagacc ctaaatggca taattgtaat 2700 tttagagata aaattacttt aattcaaact cctatagcgg ccattcgtat aatatt 2756 //