ID AM883058; SV 1; linear; genomic RNA; STD; VRL; 4446 BP. XX AC AM883058; XX DT 06-SEP-2008 (Rel. 97, Created) DT 06-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Rice yellow mottle virus ORF4, ORF1, ORF2a and ORF2b, complete genome, DE isolate Tz209, genomic RNA XX KW ORF1; ORF2a; ORF2b; ORF4. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4446 RA Fargette D.; RT ; RL Submitted (04-SEP-2007) to the INSDC. RL Fargette D., Drv, Ird, BP 64501, Montpellier 34394, FRANCE. XX RN [2] RA Pinel-Galzi A., Hebrard E., Fargette D.; RT "Theme and variations in the evolutionary pathways to virulence of an RNA RT plant virus species"; RL Unpublished. XX DR MD5; d321d79cfbfa4f3614f0f37e41976bb1. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4446 FT /organism="Rice yellow mottle virus" FT /isolate="Tz209" FT /mol_type="genomic RNA" FT /country="Madagascar" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1 putative movement protein and gene silencing" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:B5D693" FT /protein_id="CAP03079.1" FT /translation="MTRLEVLIRPTEQTVAKANAVGYTHALTWVWHSQTWDVDSVNDPV FT LRADFDPNGVGWVAVSFACTQCTAHYYTCEQVKFFTNIPSVHYDVVCADCERRVQQDDE FT VDREHQERNAEISACNARALSEGRPASLVYLSRDACDIPEHSETCRFDKYLNF" FT CDS 608..2425 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:B5D694" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:B5D694" FT /protein_id="CAP03080.1" FT /translation="MGSSAVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEVEPLSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVTLDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGSVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVREREKYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRIEQFVDAVSECSFSFESAHEGITPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFNSESTTGTPLATPSLPTECLSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSSHSKKSTQK FT SPPGDASGTSGGSTTSSMRSKESSAKPAK" FT CDS 2092..3603 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:B5D695" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B5D695" FT /protein_id="CAP03081.1" FT /translation="MPFSYVGKSGVVFGEHAGKSVCAAVKDAIAVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAEAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT FCETGEVNSASSPGVPLASLANANGEVRKLGRDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTREQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGSFSGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYALLGHTCKEYYPCKTRGRELVEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIEQYLRGIGRVSHKDGQEGQE FT NQLQPKSARQEEPAPPWAIGGAPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3446..4165 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q4QZL2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q4QZL2" FT /protein_id="CAP03082.1" FT /translation="MARKGKKTNSNQNQQGKKSRRPRGRSAEPRLQRAPVAQASRISGT FT VPGPLSSNVWPINRSVEFLMDFKRSATSTEATILNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEISAAAAGSIEMCYLYDYADTVPNDTGKMSRTAGFVTSSVWYGAEGCHLLTGG FT SARNAVVASMDCSRVDWKRVTSSIPSGVDPNVVNTILPARLAVRSSIKPAVDDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4446 BP; 982 A; 1149 C; 1268 G; 1047 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg ccgaacaatt 60 gtagccacac tgcatcgtgt atgacacggt tggaagttct tatacgaccg actgagcaga 120 ctgtggcaaa agccaacgcc gtgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgattct gtgaacgatc cagttctcag agccgacttc gaccccaacg 240 gggttggttg ggtagctgtg tcgtttgcct gtactcagtg cacggctcat tactatacgt 300 gtgagcaggt gaagttcttc accaacatcc cgtcggttca ttacgacgtg gtgtgtgctg 360 attgcgagcg ccgtgttcag caggacgacg aggtcgaccg tgagcaccaa gagcgcaacg 420 cagagatttc cgcctgcaac gctcgagcct tgagtgaggg gaggccagca agtctggtat 480 acctctctcg ggacgcttgt gatatccctg agcactccga aacgtgtcgg ttcgacaagt 540 acctcaactt ttgaggaagc cagtctgccg acatccaagg aacggtcttg gctcagacta 600 acacgggatg ggctcttctg ctgttggtcg ctttctcact cgaaccaagg aaacgacgag 660 ggtggactcc aacctcctca tcgtcttggc tgggttgata gcggccgcga tagtttcaga 720 gcgcctaccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaattggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgtggag ggggttgagg ttgaaccctt 840 gtcaacactt cggtacggca aggttcagtc cgccccacgg tttgatccct cccgaggtta 900 cgtggtcgat gtttcctaca acggccacgt gattcccgtg atattggact tcaccacgac 960 gacagctttg tcggttcccc aaagagtaaa ccctggggtc tcgatggagg cgagtcgtgg 1020 ggggctccca ccgacgtccg tcaaactcga agatgtgccg ccgagcgttg tggttttgta 1080 ccatgactct gtcaggctag gcctgggaac tagggtgcga actcccacag gtcgtgatct 1140 cctcatgacc aatcaccata tcgctgctct ggaacctaat gggatcgcgt acaagggtca 1200 ccttaagaaa gtgactctgg acgcgccagt catcgcatgt gaccatccac acatagactg 1260 cgcgttttac gaagtccctc ccaagatttg gtctctcttg ggggtcaagt ctgccagttt 1320 gaaacccttg gttaaacaaa ctgcggtgtc actcttcggt ggctcgtcat ctactgactt 1380 ctcaagttgt gttgggatag cccagattgg ggataatcca ttcctgataa ggcatcaaag 1440 cacgacttgc agtgggtggt cgggctctcc gctctaccac aaaggtagcg tggttggctt 1500 acatataggt gctgcggatg gttataatgt ggcatctaat gtggcctggt acttccatac 1560 cttcaagaag gaagtagtcg ttgagtctcc ttttgagatt tacggcaaat tccgggaggc 1620 taactctgag gagtatgacg agagtctacg acacggagta gaatatgcgg agtacgactt 1680 ctctggtgat accatccggg cgtcttccaa cacttgggtg cgtgagagag agaagtacca 1740 cgctgaggaa cgtcgtaagt ccggccagct tagctgggca gatcgttttg gtgacgacag 1800 tggcgaggat gttgatatcg agacatcgca tcccgtagca ccgtcaatat ctaagacgcg 1860 gcggaaacgg tcaaagcgca ttgagcagtt cgtcgatgcg gtttctgagt gctccttctc 1920 gttcgagtca gctcacgagg ggataacccc agagacctct gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagcctacg ggcgagtccg cccttggacg gcttattcaa 2040 ctcggagagt accactggga ctcccttggc gactccctcc cttccgacgg aatgcctttc 2100 agctacgttg gaaaatcggg tgtcgtcttt ggagaacatg ctgggaaaag tgtctgcgca 2160 gctgtcaaag acgcaatcgc agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcatc ctccaagccg gccggttcaa cagaacggta 2280 tgtccctccg ggctcgcgga agcagtccag tcactccaag aaaagtaccc aaaagtcccc 2340 cccaggcgat gcctcaggga cgagtggagg ttcgacgaca tcttcgatga ggtcgaaaga 2400 atcttctgcg aaaccggcga agtgaattcc gcttcctcgc cgggggtgcc acttgcgagc 2460 ctcgccaatg ccaatggtga ggtccgtaag ttggggagag acttggtatg tttagctgtg 2520 gtggagcgat tgaatgcctt agcctcggtt gacccccgcc agcataactg gacacccagg 2580 gagctggtag agaaaggtct ttgtgaccca gtgcgcttgt tcgtcaagaa cgagccacac 2640 ccacagaaga aattgcgtga acgtcgattc aggctgatct cttctgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggccc cagaacaaca ctgagatttc aacttggtgg 2760 cagtggcctt caaagccggg catgggtctg ttgacccgtg aacaaatccg tttggtgtgg 2820 gacgatgtgt tccaaaagca ccaagcccac cctgcggctg aggcagacat atcggggttt 2880 gactggtccg ttcaggactg ggagttgtgg tcagacctcg cgatccgtat taacagaggg 2940 agtttctccg gaaacctcag gaaagcggct atcagccgtt attactgttt tatgaactct 3000 gttttccagc tctcagatgg aaccctcatc cagcaggagt tgcccggact gatgaagtct 3060 ggctcttact gcacatcctc gactaattcg cgcatacgtt gcctcatggc tgagctcatt 3120 ggttcgcctt ggtgcattgc tatgggcgat gattctgttg aaggatggat cgagggggcc 3180 caatccaagt acgccttgtt aggtcatacc tgcaaggagt actacccgtg caaaaccagg 3240 ggccgcgagc tcgtggaatt caacttctgt tcacatctga tcaggagggg tcatgctgag 3300 ctaacctcat ggccgaaggc gctgtttcgc tttctgtcta gcaagcatga ggattttgaa 3360 gatctgtggg ttgagcttca cacgtgcggg gtgtggggca ggatcgaaca atatctgcgt 3420 gggatagggc gagtctccca caaagatggc caggaagggc aagaaaacca actccaacca 3480 aaatcagcaa ggcaagaaga gccggcgccc ccgtgggcga tcggcggagc cccggcttca 3540 acgggctcca gtggctcagg cctcccggat atctgggacg gttcctggtc cactatcttc 3600 taacgtctgg ccgattaacc gctccgtgga attcctaatg gattttaagc ggagcgccac 3660 atccacagaa gcgaccatac ttaattgtgt gccgtttaat ctgccccggg tgtggagtct 3720 tgcgcgttgt tattccttgt ggaagccaac aaggtgggat gtcgtctatc tcccagagat 3780 tagtgcggcg gcagctggaa gtattgagat gtgttatctc tacgactatg ctgacacagt 3840 cccaaatgac acgggtaaga tgagcaggac ggcgggcttc gtcacctcca gcgtttggta 3900 cggcgcggag ggctgccatt tgttaactgg tggctcagca cggaatgccg tggttgcctc 3960 gatggattgc tctcgagtcg actggaaacg cgtcactagt tctatcccta gtggcgtgga 4020 tcccaacgtc gtaaatacca tactgccagc taggctagct gtgcgatcgt cgatcaaacc 4080 ggcggttgat gatacaccag gcaaactgta tgctatcgtc agtatggtcc tgcgggaccc 4140 agttgatcca acactcaata cgtgatctgg gcccagtgaa gataggtatt ggcaccagtg 4200 atgaccaacg gattagctca gagatcgact cccctgaaaa ggatgttgag cgtttgcgaa 4260 cgcgggctta atcctaagag gccatactgg tgtctatctc acgtgaggag tcgcactcac 4320 cttaatccaa agcgacccag gcactggaca gtgcttaccc ggctggtttc ggagctgccg 4380 ggaggacctc ttcacactcc gaattcctca tgttttccga gagaattctc gggatgggtg 4440 ggggag 4446 //