ID AM883057; SV 1; linear; genomic RNA; STD; VRL; 4449 BP. XX AC AM883057; XX DT 06-SEP-2008 (Rel. 97, Created) DT 06-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Rice yellow mottle virus ORF4, ORF1, ORF2a and ORF2b, complete genome, DE isolate Tz202, genomic RNA XX KW ORF1; ORF2a; ORF2b; ORF4. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4449 RA Fargette D.; RT ; RL Submitted (04-SEP-2007) to the INSDC. RL Fargette D., Drv, Ird, BP 64501, Montpellier 34394, FRANCE. XX RN [2] RA Pinel-Galzi A., Hebrard E., Fargette D.; RT "Theme and variations in the evolutionary pathways to virulence of an RNA RT plant virus species"; RL Unpublished. XX DR MD5; be519c1a7bd789ff07c60d62e06d7126. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4449 FT /organism="Rice yellow mottle virus" FT /isolate="Tz202" FT /mol_type="genomic RNA" FT /country="Madagascar" FT /db_xref="taxon:31744" FT CDS 83..556 FT /product="P1 putative movement protein and gene silencing" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:B5D689" FT /protein_id="CAP03075.1" FT /translation="MTRLEVLIRPTEQTAAKAIAVGYTHALTWVWYPQTWDVDSVNDPV FT LRADFNPDKVGWVTVSFACTQCTAHHYTCEQVKFFTNIPSVHYDVVCADCERRVQQDDE FT IDREHQERNAEISACNARALSEGRPASLVYLSRDACDIPGHSGTCRYNRYLNF" FT CDS 610..2427 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:B5D690" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:B5D690" FT /protein_id="CAP03076.1" FT /translation="MGSSAVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEVEPLSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVREREKYHAEERRKSGQPSWADRFGDDDG FT EDVDIETSHPVAPSISKTRQKRSKRIEQFVDAVSECSFSFESAHEEVTPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTNGTPLETPFLPTACHSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQLLKDLAGLREGVKQSSTPSSSKPAGSTERYVPPGSRKQSSHSKKGTQK FT SPPGVASGTSGGSTTSSMKSKESSAKPVK" FT CDS 2094..3605 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:B5D691" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B5D691" FT /protein_id="CAP03077.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAIPVFPALEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAKAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNTASSPGVPLAGLANSNGEVRKLGRDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTREQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGSFSGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRK FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWSRIEQYLRGIGRVSHKDGQEGQE FT NQLQPKPARQEEPTSSWAFGGAPASTGSGGSGLPDIWDGSWSTIF" FT CDS 3448..4167 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:B5D692" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B5D692" FT /protein_id="CAP03078.1" FT /translation="MARKGKKTNSSQNQQGKKNRRPRGRSVEPRLQRAPVAQASRISGM FT VPGPLSSNVWPVNRSVEFLMDFKRSATSVDATIFNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADTVPSDTGKMSRTAGFVTSSVWYGAEGCHLLTGG FT SARNAVVASMDCSRVDWKRVTSSIPSDVDPNVVNTILPARLAVRSSIKPAVDDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4449 BP; 987 A; 1153 C; 1267 G; 1042 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg ccgaacaatt 60 gtagccgcgc tgctcgtcgt gcatgacacg gttggaagtt cttatacgac cgacagagca 120 gactgcggca aaagccatcg ccgtgggcta tacgcacgca ctcacctggg tttggtatcc 180 gcagacctgg gacgttgatt ctgtgaacga tccagttctc agagccgact tcaaccccga 240 taaggttggt tgggtgaccg tgtcgtttgc ctgtacccag tgcacagctc atcactatac 300 gtgtgagcag gtgaagttct tcaccaacat cccgtcagtt cactacgacg tggtgtgtgc 360 tgattgcgag cgccgtgttc agcaggacga cgagatcgac cgtgagcacc aagagcgcaa 420 cgcagaaatt tctgcttgca acgctcgagc tttgagcgag ggaagaccag caagtctggt 480 gtacctttct cgggacgctt gtgatatccc tgggcactcc ggaacgtgcc ggtataacag 540 gtacctcaac ttttgagggt gccaacctgc cgacatccaa ggaacggtct tggctcagac 600 taacacggga tgggctcttc tgctgttggt cgctttctca ctcgaaccaa ggaaacgacg 660 agggtggact ccaacctcct catcgtcttg gctgggttga tagcggccgc gatagtttca 720 gagcgcctac ccgtgacggc gtcattgtgg gcaatcccct cagctatcat agcaaattgg 780 atcgtgctgt cagctcacga gagcttcagc cggttcgtgg agggggttga ggttgaaccc 840 ttgtcaacac ttcggtacgg caaggttcag tccgctccac ggttcgatcc ctcccgaggt 900 tatgtggtcg atgtttctta caacggtcac gtgattccgg tgatattgga cttcaccacg 960 acgacagctt tgtcggttcc ccaaagagta aaccctgggg tctcgatgga ggcgagtcgt 1020 ggggggctcc caccgacgtc cgtcaaactc gaagatgtgc cgccgagcgt tgtggtcttg 1080 taccacgact ccgtcaggct aggcctggga actagggtgc gaactcccac aggtcgtgat 1140 ctcctcatga ccaatcacca tatcgctgcc ctggaaccta atggtatcgc gtacaagggt 1200 catctcaaga aggtggctct cgacgcgcca gtcattgcat gtgaccatcc acacatagac 1260 tgcgcgtttt acgaggtgcc tcccaagatt tggtctctct tgggggtcaa gtctgccagt 1320 ttgaagcctc tggttaaaca aactgcggtg tcactcttcg gtggctcgtc atctactgac 1380 ttctcaagtt gtgttgggat agcccagatt ggggacaatc cgtttctgat aaggcatcaa 1440 agcacaactt gcagtggatg gtcgggctcc ccgctctacc acaaaggttg cgtggttggc 1500 ttgcatatag gtgctgcgga tggttataat gtggcatcta atgtagcctg gtacttccat 1560 accttcaaga aggaagtggt cgttgagtct cctttcgaga tctacggcaa attccgggag 1620 gcgaactctg aggagtatga cgagagtcta cgacatggag ttcaatatgc ggagtatgac 1680 ttctctggtg ataccattcg ggcgtcttca aacacctggg tgcgtgagag agagaagtac 1740 cacgctgagg aacgtcgtaa gtccggccag cctagctggg cagaccgttt tggtgacgac 1800 gatggcgagg atgttgatat cgagacatcg catcccgtag caccgtcaat atctaaaacg 1860 cggcagaaac ggtcaaagcg cattgagcag ttcgtcgatg cggtttctga gtgttccttc 1920 tcgtttgagt cagctcacga ggaggtgacc cctgagacct cagcttatga ccacgttcct 1980 ttaaactgcc agggggcggg ctcgagccta cgggcgagtc cgcccttgga cggcttatcc 2040 aactcggaga ataccaatgg gactcccttg gagactccct tccttccgac ggcatgccat 2100 tcagctacgt tggaaaatcg ggtgtcatct ttggagaaca tgctgggaaa agtgtctgcg 2160 cagctgtcaa agacgcaatc ccagtattcc cagctcttga aggatttggc tggcctgaga 2220 gagggagtaa agcagagctc gactccctca tcctccaagc cggccggttc aacagaacgg 2280 tatgtccctc cgggctcgcg aaagcagtcc agtcactcca agaaaggtac ccaaaagtcc 2340 cccccaggcg ttgcctcagg gacgagtgga ggttcgacga catcttcgat gaagtcgaaa 2400 gaatcctctg cgaaaccggt gaagtgaata ccgcttcctc gccgggggtg ccgcttgcgg 2460 gtcttgccaa ttcaaatggt gaggttcgca agctggggag agatttggta tgtttagctg 2520 tggtagagcg actgaatgcc ttagcctcgg ttgacccccg ccagcataac tggacaccca 2580 gggagctggt agagaagggt ctttgtgacc ccgtgcgctt gtttgtcaag aacgagccac 2640 acccacagaa gaaattgcgt gaacgtcgat tcaggctgat ctcttctgtt tctctagttg 2700 accagctggt ggagcggatg cttttcgggc ctcagaacaa caccgagatt tcgacttggt 2760 ggcagtggcc ctcgaagccg ggcatgggtc tgttgacccg tgaacaaatc cgtctggtgt 2820 gggacgatgt gttccagaag caccaagccc accctgcggc tgaggcagac atatcggggt 2880 ttgactggtc cgttcaggac tgggagttgt ggtcagacct cgcgatccga attaacagag 2940 ggagtttctc aggaaacctc aggaaagcgg ctatcagccg ttattactgt ttcatgaact 3000 ctgttttcca gctctcagat ggaaccctca tccagcagga gttgcccgga ttaatgaaat 3060 ccggctctta ctgcacctct tcaacaaact cgcgcatacg ctgcctcatg gccgagctca 3120 tcggctcgcc gtggtgtata gctatgggag atgattctgt ggaggggtgg atcgaggggg 3180 cccaatccaa gtacgccgcg ctgggtcaca cctgcaagga gtactaccca tgcaagacca 3240 ggggccgtga gctcctggaa ttcaatttct gttcacactt gatcaggaag ggtcatgctg 3300 agctaacttc atggccgaag gcgttgtttc gctttctgtc tagcaagcat gaggattttg 3360 aagatctgtg ggttgagctt cacacgtgcg gggtgtggag caggatcgaa caatatctac 3420 gtgggatagg gcgtgtctcc cacaaagatg gccaggaagg gcaagaaaac caactccagc 3480 caaaaccagc aaggcaagaa gaaccgacgt cctcgtgggc gttcggtgga gccccggctt 3540 caacgggctc cggtggctca ggcctcccgg atatctggga tggttcctgg tccactatct 3600 tctaatgtct ggccggttaa ccgctccgtg gaattcctca tggattttaa acggagcgcc 3660 acctcggtag atgcgaccat attcaactgt gtgccgttca atctaccccg agtgtggagt 3720 cttgcgcgtt gttactcctt gtggaagcca acaaggtggg atgtcgtcta ccttcccgag 3780 gttagtgcgg caacggctgg aagtatcgag atgtgttatc tctacgacta tgccgacaca 3840 gtcccaagtg acacgggtaa gatgagcagg acggcgggct tcgtcacctc tagcgtttgg 3900 tacggcgcag agggctgcca tttgttaact ggcggctcag cacgcaatgc cgtggtcgcc 3960 tcgatggatt gttcccgagt cgactggaaa cgcgttacta gttcaattcc tagtgacgtg 4020 gatcccaacg tcgtaaacac catactgcca gctaggctag ctgtgcggtc gtcgattaaa 4080 ccggcggttg atgatacacc aggcaagctg tatgctatcg tcagtatggt cctgcgggat 4140 ccagttgacc caacacttaa cacgtgaaac tggatctggt ggagataggt gttagtatca 4200 gtcatgacca acggattagc tcagagatcg actaccctga aaaggatgtt gagcgtttgc 4260 gaacgcgagc ttggtcctaa gagtgcatac tggtacctgt cccacgtgag gagttgcact 4320 cacattaatc caaagcaacc caaacactgg atagtgttta cccggctggt ttcggagctg 4380 ccgggaggac ctctgcacac tccgaattct ctatttcatc cgagagaatt ctcgggatgg 4440 gtgggggag 4449 //