ID AM883056; SV 1; linear; genomic RNA; STD; VRL; 4447 BP. XX AC AM883056; XX DT 06-SEP-2008 (Rel. 97, Created) DT 06-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Rice yellow mottle virus ORF4, ORF1, ORF2a and ORF2b, complete genome, DE isolate Mg16, genomic RNA XX KW ORF1; ORF2a; ORF2b; ORF4. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4447 RA Fargette D.; RT ; RL Submitted (04-SEP-2007) to the INSDC. RL Fargette D., Drv, Ird, BP 64501, Montpellier 34394, FRANCE. XX RN [2] RA Pinel-Galzi A., Hebrard E., Fargette D.; RT "Theme and variations in the evolutionary pathways to virulence of an RNA RT plant virus species"; RL Unpublished. XX DR MD5; 23e04dbeba0d61af5a4316e1ffc05cf9. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4447 FT /organism="Rice yellow mottle virus" FT /isolate="Mg16" FT /mol_type="genomic RNA" FT /country="Madagascar" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1 putative movement protein and gene silencing" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:B5D685" FT /protein_id="CAP03071.1" FT /translation="MTRLEVLIRPTLQTVEKAIAAGYTHTLTWIWHSQIWDVNGVSDPT FT LAADFNPERAGWVSVSFACTRCTAHYYTCEQVKFFTNIPSVHYDVVCADCERSVQLDDE FT IDREHDERNAEISACNARALSEGRPASLVYLSRDACDIPEHAGSCRFDKYLNF" FT CDS 607..2424 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:B5D686" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:B5D686" FT /protein_id="CAP03072.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIALSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKRDVVVESPFEIYGKFREANS FT EEYDESLRHGVKYEEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAVSECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSVTLSLPTECPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSTKSKESSAKPAK" FT CDS 2091..3605 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:B5D687" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B5D687" FT /protein_id="CAP03073.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPPGLAQAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLTGLANSNGEVRRLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMSLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTKGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWSRIERYLRGIGRVSHKDGQEGQE FT NQLQSRPARQEEEPASSWAFGGAPASTGSSGSGVPDIWDGSWTTIF" FT CDS 3445..4164 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:B5D688" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B5D688" FT /protein_id="CAP03074.1" FT /translation="MARKGKKINSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSNAWPVHSVEFLMDFKRSATSADAVAFNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADAIPSDTGKMSRTAGFVTSSVWYGAEGCHLLNGG FT SARNAVVASMDCSRVGWRRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVDDVPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4447 BP; 966 A; 1139 C; 1287 G; 1055 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtatccacgc tgctacgtgt atgacacggt tggaagttct tatacgaccg actttgcaga 120 ccgtggaaaa ggccattgcc gcgggctata cgcacacgct cacctggatt tggcattctc 180 agatctggga cgttaacggt gtgagtgatc ccactcttgc cgctgacttc aaccccgaga 240 gggctggttg ggtgtctgtg tcatttgcct gtactcggtg cacggctcac tactacacgt 300 gtgagcaggt gaaattcttc accaacatcc cgtcggttca ttacgacgtg gtgtgtgctg 360 attgtgagcg cagtgttcag ctggacgacg agatcgaccg cgaacacgac gagcgtaacg 420 cagagatttc tgcctgcaac gctcgggctt tgagtgaggg tcgaccagcc agtctggttt 480 acctctctcg ggacgcttgc gacattcccg agcacgccgg aagctgccgg tttgataagt 540 acctcaactt ttgagggaac attctgccga catccaagga gcggtcgtgg ttcagactaa 600 cacgggatgg gctcttctgt tgttggtcgc tttctcactc gcaccaagga aacgacgagg 660 gtggactcca acctcctcat cgtcttggct gggttgatag cggccgcgat agtctcagag 720 cgcctgcccg tgacggcgtc attgtgggca atcccctcag ctatcatagc aaactggatc 780 gcgctgtcag ctcacgagag cttcagccgg ttcgttgagg gggttgagat tgagcctatg 840 tccacgcttc ggtatgggaa ggttcagtct gctccccggt ttgatccctc ccggggttat 900 gtggtcgatg tttcgtacaa cggccacgtg attccggtga tattggactt cactacgact 960 acggctctgt cggttcccca aagagtaaac cctggggtct cgatggaggc tagtcgtggg 1020 gggctcccac cgacgtccgt caaactcgaa gatgtgccgc cgagcgttgt ggttttgtac 1080 cacgactctg tcaggctagg ccttggaact agggtgcgaa ctcccacggg tcgtgatttg 1140 ctcatgacca atcaccatat cgctgctcta gagcccaatg gcatcgcgta taagggtcac 1200 cttaagaaag tggctctaga cgcgccagtc atcgcatgtg accatccaca catagactgt 1260 gcgttttacg aggtgcctcc caagatctgg tctctcttgg gggtcaagtc tgccagtttg 1320 aaacctttgg ttaaacagac tgcggtgtca ctcttcggag gctcgtcatc cactgacttc 1380 tcgagttgtg ttgggatagc ccagattggg gataatccat tcctgataag gcatcaaagc 1440 acaacttgca gtggctggtc gggctccccg ctctaccaca aaggttgcgt ggttggctta 1500 catataggtg ctgcggatgg ttataatgtg gcatctaatg tagcctggta cttccatacc 1560 ttcaaaaggg atgttgttgt tgagtctcca ttcgagattt acggcaaatt ccgggaagca 1620 aactctgagg agtatgacga aagtctgcgc catggagtga aatatgagga gtacgatttc 1680 tctggtgaca caatccgggc gtcttccaac acctgggtgc gtgagagaga gagataccac 1740 gctgaggaac gtcgtaagtc cggccagctc agctgggcag atcgttttgg tgacgacagt 1800 ggcgaggatg ttgatatcga gacatcgcat cccgtagcac cgtcaatatc caaaacgcgg 1860 cggaaacggt caaagcgcgt tgagcagttc gtcgacgcgg tttctgagtg ctccttctcg 1920 ttcgagtcag ctcacgaggg gattgtgcca gagacctcag cttatgacca cgttccttta 1980 aactgccagg gggcgggctc gagccttcgg gcgagtccgc ccttggacgg cttatccaac 2040 tcggagaata ccgctgggac tccctcggtg accctctccc ttccgacgga atgcccttca 2100 gctacgttgg aaaatcgggt gtcatctttg gagaacatgc tgggaaaagt gtctgcgcag 2160 ctgtcaaaga cgcaatctca gtattcccag atcttgaagg atttggctgg cctgagaggg 2220 gaagtaaagc agagcttgac tccctcatcc tccaagccgg ccggttcaac agaacggtat 2280 gtccccccgg gctcgcgcaa gcagtccaat cactccaaga aaagtaccca aaagtccccc 2340 ccaggcgatg cctcagggac gagtggaggt tcgacgacat cttcgacgaa gtcgaaagaa 2400 tcctctgcga aaccggcgaa gtgaactccg cttcttcgcc gggggtgccg ctgacgggcc 2460 ttgccaattc caatggtgag gttcggaggc ttgcgagaga tttggtatgt ttagctgtgg 2520 tggagcgatt gaatgcctta gcctcggttg acccccgcca gcataactgg acacccaggg 2580 agctggtaga gaaaggtctt tgtgaccctg tgcgtttgtt tgttaagaac gagccacacc 2640 cacagaagaa attgcgtgaa cgcagattca ggctgatttc ttctgtttct ctagttgacc 2700 agctggtgga gcggatgctt ttcgggccgc agaacaacac tgagatttca acttggtggc 2760 agtggccttc gaagccgggc atgagtttgt tgacccctga acaaatccgt ttggtgtggg 2820 acgacgtgtt ccagaagcac caagcccacc ctgcggctga ggcagacata tcggggtttg 2880 attggtccgt tcaggactgg gagttgtggt cagacctcgc gatccgtata aacaggggga 2940 attttcaggg aaacctcagg aaagcggcta tcagccgtta ctactgtttt atgaactctg 3000 ttttccagct ctcagatgga actctcatcc agcaggagtt acccgggctt atgaagtccg 3060 gctcttactg cacctcatcc accaattcac gcatacgctg cctaatggct gagctaatcg 3120 gctcgccctg gtgcatagct atgggtgatg attcggtgga aggatggatt gagggtgccc 3180 agtccaagta cgccgcgttg ggtcacacct gcaaggagta ctacccatgc aagaccaagg 3240 ggcgtgagct cctggaattc aacttctgtt cacacttgat caggaggggt catgctgagc 3300 tcacttcatg gccgaaggcg cttttccgct ttctgtcgag caagcatgag gactttgaag 3360 atctgtgggt tgagcttcac acgtgcgggg tgtggagcag gatcgaacga tatctgcgtg 3420 ggatagggcg agtctcccac aaagatggcc aggaagggca agaaaatcaa ctccaatcaa 3480 ggccagcaag gcaagaagaa gagccggcgt cctcgtgggc gttcggcgga gccccagctt 3540 caacgggctc cagtggctca ggcgtcccgg atatctggga cggttcctgg accactatct 3600 tctaatgcct ggccggtcca ctccgtggaa ttcctgatgg attttaagcg gagtgccaca 3660 tcggcggatg cggtagcatt caattgtgtg ccgtttaatc tgcctcgggt gtggagtctt 3720 gcacgttgtt actcgctgtg gaagccaaca cggtgggatg tagtttacct ccctgaggtg 3780 agcgcggcga cagctggaag tattgagatg tgttatctct acgactatgc tgatgccatc 3840 ccaagtgaca cgggcaagat gagcaggacg gcgggcttcg tcacctctag cgtttggtac 3900 ggcgcggagg gctgccattt gttgaatggc ggttcagcac ggaatgccgt agtcgcctcg 3960 atggattgct ctcgagtcgg ctggagacgc gtaactagtt caattcctag tagcgtggat 4020 cccaacgtcg taaataccat actgccagca aggctagctg tgcggtcgtc gatcaaaccg 4080 acggtcgatg atgtgccggg gaaactctat gccatcgtca gtatggtcct gcgggatccg 4140 gttgatccaa cactcaatac gtgaaccgga ttcaatggag ataggtattg gcaccagtga 4200 tgatccacgg attagctcag agatcgacta ccctgaaaag gatgttgagc gtttgcgaac 4260 gcgggctgag tcctacgaga tgatactggc gcctatccca tgtggggaat cgcacccacg 4320 tttcaaccca aagcgatcca cacgctggat agcgtttacc tggttggttt cggagctgcc 4380 aggaggacct tttcacactc cgaattccac attctttccg agagaattct cgggatgggt 4440 gggggag 4447 //