ID AM850115; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC AM850115; XX DT 30-AUG-2007 (Rel. 93, Created) DT 12-SEP-2007 (Rel. 93, Last updated, Version 2) XX DE Tomato leaf curl New Delhi virus DNA-A complete genome, isolate Himachal XX KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AC5 gene; AV1 gene; AV2 gene; KW coat protein; pre-coat protein; replication enhancer protein; KW replication initiator protein; transcriptional activator protein. XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Kumar Y.; RT ; RL Submitted (29-AUG-2007) to the INSDC. RL Kumar Y., Floriculture, Institute of Himalayan Bioresource Tech., IHBT, RL Palampur, Himachal Pradesh, 176061, INDIA. XX RN [2] RA Kumar Y., Hallan V., Zaidi A.A.; RT "Tomato leaf curl New Delhi virus from Palampur"; RL Unpublished. XX DR MD5; 3ea0ed0ada75ef14c2e621c37ef39e92. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Tomato leaf curl New Delhi virus" FT /isolate="Himachal" FT /mol_type="genomic DNA" FT /country="India:Himachal" FT /isolation_source="Potato leaf" FT /collected_by="Yogesh Kumar" FT /collection_date="10-Nov-2006" FT /identified_by="Yogesh Kumar" FT /db_xref="taxon:223347" FT CDS 120..458 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:A7WPE9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A7WPE9" FT /protein_id="CAO98803.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHLFNARIESTPSSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 280..1050 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:A7WPF0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A7WPF0" FT /protein_id="CAO98804.1" FT /translation="MVKRPADIIFSTPVSKVRRRLNFDSPFGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGSGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQESGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(310..795) FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A7WPF1" FT /protein_id="CAO98805.1" FT /translation="MHVLHRCCARFIVKHVKNFPKILWRSCRTTVTDQKKHDTVSMVFC FT LDVFIHPYLPQHIDRFHTKSLPYAMCESRSSGNITNTHDFANMRDIVPRFKGLHLTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSKGAVEVETTAYFRYGR" FT CDS complement(1047..1457) FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:A7WPF2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A7WPF2" FT /protein_id="CAO98806.1" FT /translation="MITDSRTGESITADRAESGVYTWEIRNPLYFKILKHNSRPFLRQH FT DIINIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDRLGVIGI FT YNVIRAVYHVLDNVMEQTIDVWTSYDIKLDLY" FT CDS complement(1177..1596) FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:A7WPF3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A7WPF3" FT /protein_id="CAO98807.1" FT /translation="MQSLSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLQCGCTYYCSIH FT CHDHGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFETQQQTLPKTARHHQYSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNTGP" FT CDS complement(1499..2584) FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:A7WPF4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A7WPF4" FT /protein_id="CAO98808.1" FT /translation="MTPPRRFRINAKNYFLTYPKCSLTKEDALSQLRTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI FT DKDGDVLEWGIFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEIYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNVALKQWAIKNAVFITLEEPL FT YSGRENIAPTEEEEEHSQEAS" FT CDS complement(2251..2427) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A7WPF5" FT /protein_id="CAO98809.1" FT /translation="MGLRISMFSSNSKANSSAKITDSSTWFPQVGQHISIRTFRELNQH FT RTSKSTSTKTETF" XX SQ Sequence 2740 BP; 741 A; 583 C; 610 G; 806 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattcg agctacatgg 60 cttctttgct gcgtggggac caataaatag acttactcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtttaagg tgcatgctag 180 ctgtaaaata tctccaagag atagaaaaga actattcccc agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttcttcgag caaagaacta tggtgaagcg accagcagat 300 atcatctttt caacgcccgt atcgaaagta cgccgtcgtc tcaacttcga cagccccttt 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtccttt gaatctaggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga ggatctggac tcacacatcg cgtagggaag 600 cgattttgtg tgaaatctgt ctatgtgctg gggaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttggtcc gtgaccgtcg tcctacagga 720 tctccacaag attttgggga agtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc tactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgtct ataaccaaca agagtccggc aagtatgaga atcatactga gaacgcatta 960 atgttgtata tggcctgtac tcatgcatca aatcctgtgt atgctacttt gaaaatccgg 1020 atctatttct atgattcggt aacaaattaa taaagatcga gttttatatc atatgaagtc 1080 catacatcaa tcgtttgttc cattacatta tccaaaacat gataaactgc tcttattaca 1140 ttataaattc ctattacacc aagcctatcc aggtacctaa ggacctgtgt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt gtatttgaat attgatgatg 1320 tcgtgctgtc ttaggaaggg tctgctgttg tgtttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgga ctcccctgtg 1440 cgtgaatccg tgatcatggc agtggatcga gcagtaatac gtacacccac actgcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctgtggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgataaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctacgttttt ttcttcgtcc agatattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaaatgctt tagatagtgt ggatcaacgt 1800 catcaatgac gttgtaccag gcctcattgc tatacacctt tgggctcaga tcaagatgtc 1860 cacataagta attatggggt cctaagcaac gagcccacat tgttttgccc gttctactat 1920 ccccctctat gactatgctt atgggcctga aaggccgcgc agcggcacac accacattgg 1980 acgacaccca atcgacgagt tctggcggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacataaat ctcagaagga ggttgaaaaa tgcgatctaa attggtattt aaattgtgaa 2100 actgcagaac ataatccttt ggggctaatt cctttaatac tttcaacgca tcgtctttat 2160 ttcccgtgtt aatcgcctga gcatatgcat cgttcgccgt ttgttgacca ccacgagcag 2220 atcgtccatc gatctggaaa ataccccatt ctagaacgtc tccgtctttg tcgatgtact 2280 ttttgacgtc cgatgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat ttttgcactg gaatttgcct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tctacatatc ttaatgaatt 2460 ttttcgcagt tggggtttct agggttcgca gttgggaaag tgcgtcctcc ttagttagag 2520 agcactttgg atatgtgagg aaatagtttt tggcatttat tctaaaacga cgtggtggag 2580 tcataaaact tgtcgttttg attcggcgtc cctcaactct ctctatgtaa ttggtgtctg 2640 gagtcctata tataggtaag acaccatatg gcagaattgt aattttgaaa agaaaattac 2700 tttaattcaa attccctaaa gcggccattc gtataatatt 2740 //