ID AM849548; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC AM849548; XX DT 07-JAN-2010 (Rel. 103, Created) DT 07-JAN-2010 (Rel. 103, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus segment DNA A, complete sequence, clone DE SnAa XX KW C4 gene; coat protein; complete viral segment; CP gene; pre-coat protein; KW REn gene; Rep gene; replication association protein; KW replication enhancer protein; transcription activation protein; TrAP gene; KW V2 gene. XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Tahir M.; RT ; RL Submitted (23-AUG-2007) to the INSDC. RL Tahir M., School of Biological Sciences, University of The Punjab Lahore RL Pakistan, 54590, PAKISTAN. XX RN [2] RA Tahir M., Haider M.S., Briddon R.W.; RT "Diversity of the Begomoviruses in Punjab Pakistan"; RL Unpublished. XX DR MD5; 5e39c84d7f3589da2cd7df9633a6095d. DR EuropePMC; PMC5127021; 27834936. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA A" FT /host="Solanum nigrum" FT /mol_type="genomic DNA" FT /country="Pakistan:Lahore" FT /isolation_source="leaves" FT /collected_by="Muhammad Tahir" FT /collection_date="02-Jun-2004" FT /clone="SnAa" FT /db_xref="taxon:223347" FT CDS 120..458 FT /gene="V2" FT /product="pre-coat protein" FT /function="movement" FT /db_xref="GOA:D2N278" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2N278" FT /protein_id="CAO98742.1" FT /translation="MWDPLLHEFPRSVHGLKCMLAVIYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNSRIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 280..1050 FT /gene="CP" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:D2N279" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D2N279" FT /protein_id="CAO98743.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSLDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDCGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYVSKDQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1095..1457) FT /gene="REn" FT /product="replication enhancer protein" FT /db_xref="GOA:D2N280" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2N280" FT /protein_id="CAO98744.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFRTQVLRYLDMLGVIGI FT YNVIRAVYHVLDNVME" FT CDS complement(1177..1596) FT /gene="TrAP" FT /product="transcription activation protein" FT /function="enhances transcription" FT /db_xref="GOA:D2N281" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2N281" FT /protein_id="CAO98745.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCTYYITIN FT CHDHGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHHQDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT CDS complement(1499..2584) FT /gene="Rep" FT /product="replication association protein" FT /function="replication initiation" FT /db_xref="GOA:D2N282" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2N282" FT /protein_id="CAO98746.1" FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH FT NLISNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWASVNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNIIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPTEEEEEHSQEAS" FT CDS complement(2251..2427) FT /gene="C4" FT /product="C4 protein" FT /function="pathogenicity determinant" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2N283" FT /protein_id="CAO98747.1" FT /translation="MGLRISMFSSNSKGNSSARITDSSTWFPQVGQHISIRTFRELNQR FT QMSKHTSTKTETF" XX SQ Sequence 2739 BP; 740 A; 601 C; 609 G; 789 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg cccttaacca atgaaattca cgctacatgg 60 cttatttagt gcgtggggac caataaatag acttgctcac caagtttgga tccaccaaca 120 tgtgggatcc attattgcac gaatttccac gtagcgttca tggtctgaag tgcatgctag 180 ctgtaatata tctccaagag atagaaaaga actattcccc agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttctccgtg caaagaacta tggcgaagcg accagcagat 300 atcatcattt caactcccgc atcgaaagta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtctagacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtcattt gaatctaggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga gggactggac tcacacatcg cgtagggaag 600 cgattctgtg tgaaatcagt ctatgtgctg ggaaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttggtcc gtgaccgtcg tcctacagga 720 gctccccagg attgcgggga agtgtttaat atgtttgaca atgaaccaag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gttttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgtatctaa ggaccaagca ttagttagga agtttgttag ggttaataat 900 tatgtcgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt cacaaattaa taaatatcga gctttatatc atatgaagtc 1080 catacatcaa tcgttcactc cattacatta tccaatacat gataaactgc tcttattaca 1140 ttataaatcc ctataacacc tagcatatcc aggtacctaa ggacctgggt tctgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt gtatttgaat cttgatgatg 1320 tcgtgctgtg ttaggaaggg cctgctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ctcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcgt tatataatac gtacacccac acggcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctgtggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ttcttcgtcc agatattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaatccca cctttaatca tgactggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgttt tagatagtgg ggatcaacgt 1800 catcaatgat gttgtaccag gcatcattgc tatacacctt tgggctcaga tcaagatgtc 1860 cacacaagta attgtggggt cctaagcatc gagcccacat tgttttccct gttctactat 1920 ccccctctat gactatgctt atgggcctaa aaggccgcgc agcggcacac acaacattga 1980 cactggccca atcgacaagt tctggaggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacgtaaac ctcagaacga ggttggaaaa tgcgatctaa attgcttatt aaattgtgaa 2100 actgcaaaac ataatccttg ggggctaatt cctttaatac tttcaatgca tcttctttat 2160 tccccgtgtt aatcgcctta gcatatgcat cgttggccgt ctgctgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtatg 2280 ctttgacatc tgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat tcttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tctacagatc ttgatgaatt 2460 tcttcgcagt tggggtttct agggtttgca attgggaaag tgcctcttct ttagttaggg 2520 agcactttgg atatgtgagg aaatagtttt tggcatctat tctgaaacga cgtggcggag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaacttc ctctatgtaa ttggcgtctg 2640 gcgtcccata tataggtagg acgctaaatg gcaaaattgt aattttcaaa agaaaactac 2700 tttaattcaa aatcctcata gcggccattc gttaatatt 2739 //