ID AM849097; SV 1; circular; genomic DNA; STD; VRL; 2581 BP. XX AC AM849097; XX DT 17-JUL-2008 (Rel. 96, Created) DT 04-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Chickpea chlorotic dwarf virus complete genome, clone ccdv 6 XX KW C1 gene; C1:C2 gene; coat protein; movement protein; Rep; Rep A; V1 gene; KW V2 gene. XX OS Chickpea chlorotic dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2581 RA Nahid N.; RT ; RL Submitted (22-AUG-2007) to the INSDC. RL Nahid N., Plant Biotechnology Division, NIBGE, Jhang Road Faisalabad, P.O. RL Box 577, 38000, PAKISTAN. XX RN [2] RX DOI; 10.1007/s00705-008-0133-7. RX PUBMED; 18566736. RA Nahid N., Amin I., Mansoor S., Rybicki E.P., van der Walt E., Briddon R.W.; RT "Two dicot-infecting mastreviruses (family Geminiviridae) occur in RT Pakistan"; RL Arch. Virol. 153(8):1441-1451(2008). XX DR MD5; 2ac1532c4ebc11abdb972383a4c2374f. DR EuropePMC; PMC3214926; 22047503. XX FH Key Location/Qualifiers FH FT source 1..2581 FT /organism="Chickpea chlorotic dwarf virus" FT /mol_type="genomic DNA" FT /country="Pakistan:Faisalabad" FT /isolation_source="chickpea leaf" FT /collection_date="2005" FT /clone="ccdv 6" FT /db_xref="taxon:463360" FT CDS 132..410 FT /transl_table=1 FT /gene="V1" FT /product="movement protein" FT /db_xref="GOA:B4ERA3" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B4ERA3" FT /protein_id="CAO91917.1" FT /translation="MERILYQVFPTDTNYSYDSPPVNTNSQGSSQTDFGKVVIALVVIL FT VSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPQP" FT CDS 423..1160 FT /transl_table=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:B4ERA4" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B4ERA4" FT /protein_id="CAO91918.1" FT /translation="MSTVTWGNKRKRSDRSSKAKSKSSGSYVPRSVSSRRESLQVATFS FT WTSSGSGIKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTVYLDPSHYPKVFK FT CPFTFWLVYDKAPGASVPSTGDIFEGPSLFPANPWTWTVSRAACHRFVVKKTWSVVVES FT NGVDPGKAQSSSYYGPGPCNQIKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGA FT PSQKSDVYVNGYFRVYFKSVGDQ" FT CDS complement(join(1316..1729,1816..2406)) FT /transl_table=1 FT /gene="C1:C2" FT /product="Rep A" FT /function="replication associated protein" FT /db_xref="GOA:B4ERA5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B4ERA5" FT /protein_id="CAO91919.1" FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL FT GLATELHQDGTTHYHALVQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK FT LFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQEPRRPGARVPSLYICGPTRTGKTTW FT ARSLGRHNYWNGTIDFTTYDEHATYNIIVDIPFKFVPLWKQLIGCQFDFTVNPKYGKKK FT KIKGGVPSIILTNRDEDWIPAMSEHQKEYFTDNCEIHYMDDGETFFARESSSH" FT exon complement(1316..1729) FT /gene="C1:C2" FT /number=2 FT CDS complement(1528..2406) FT /transl_table=1 FT /gene="C1" FT /product="Rep" FT /function="replication" FT /db_xref="GOA:B4ERA6" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B4ERA6" FT /protein_id="CAO91920.1" FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL FT GLATELHQDGTTHYHALVQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK FT LFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQVSIDAYTLVHPVSYQQAQSDLEWMA FT DLTRNREGLELESPASTSADQLVPERPPGLEASDDTTTGMGPSTSPRTTNTPPIISSST FT SPSSSSHCGSN" FT intron complement(1730..1815) FT /gene="C1:C2" FT /number=1 FT exon complement(1816..2406) FT /gene="C1:C2" FT /number=1 XX SQ Sequence 2581 BP; 665 A; 513 C; 653 G; 750 T; 0 other; accggcgtgg cccaccttat cgcgagcacc ttagtgcgag cggttcagat ttaaagtgga 60 aaagttcccg cccactaggg tttgctttag cttttgcttt ataaaaggcg cactaatggg 120 tagaccgtag aatggaacgt attctgtatc aggtatttcc tacggatacg aattattcgt 180 acgattctcc tcctgtgaat acgaattccc agggatcctc tcaaacggat ttcgggaagg 240 tggttatcgc cttggtggtt attctggtta gtgttggtgt gttctatctg gcttatagtc 300 tgttcttgaa ggattgtatc cttctgttta aggcgaagaa gcagaggacc accactgaaa 360 tcgggtttgg tcaaaccccg gctcgaaacc aggatcatcc tcaaccttag gcggggtgca 420 tcatgtccac tgtgacttgg ggaaacaaga ggaagcgcag cgataggtcc tcgaaggcga 480 agagtaagtc ctctgggtct tatgttccca gatctgtgtc ctccaggagg gaatcgttgc 540 aggtggctac cttttcctgg actagttctg gttcgggtat caagttctct actggtggtg 600 ctgcctacct tgtgagtaat tttccacagg gtgccaacga taactgtcgt cacaccaaca 660 agaccgtgct atacaaattc atggccaaga atacggtgta cttggatcct agtcattatc 720 ccaaggtctt taagtgcccg ttcacctttt ggctggtgta cgacaaggct cctggtgcaa 780 gtgtccctag tactggggac atatttgaag gcccctctct attccctgct aatccctgga 840 cgtggactgt gtctagggct gcctgccatc gttttgttgt gaaaaaaacg tggtcagtgg 900 tggtggagag caatggtgtt gatccaggaa aggcccaatc cagttcctat tatgggcctg 960 gaccttgtaa tcagattaag tcctgcaata agttctttaa gaggctgggt gtgtcaacgg 1020 agtggaaaaa tagttccacg ggggatgttg gtgatataaa ggaaggagcc ctgtatattg 1080 taggtgctcc ttcccagaaa tctgatgtat atgtaaatgg ttatttccga gtgtacttca 1140 agtccgttgg cgatcaataa aaatttatta ttatgaatat tttacattgt gcaagtaggt 1200 agaaattcaa tatgttacat tacacacgaa ataagcaaaa aaaacacacc taaaacaaaa 1260 gtacactacc cacgataata taactttagg ttaacccgta tgaggagagg cacgttcagt 1320 gactcgacga ttcccgggca aaaaaagttt cgccgtcatc catataatgg atctcacaat 1380 tgtctgtaaa gtattctttc tgatgctcag acatagcagg aatccagtcc tcatctctat 1440 ttgttaaaat tatggaaggg acaccacctt ttattttctt cttttttcca tacttagggt 1500 tgacagtgaa gtcgaactgg caacctatta attgcttcca caatgggacg aacttgaagg 1560 ggatgtcgac gatgatatta taggtggcgt gttcgtcgta cgtggtgaag tcgatggtcc 1620 cattccagta gttgtgtcgt ccgaggcttc tagcccaggt ggtctttccg gtacgagttg 1680 gtccgcagat gtagaggctg gggactctag ctccaggcct tctcggttcc tggttagatc 1740 ggccatccat tcaaggtcag attgagcttg ctgatatgaa actggatgga caagagtgta 1800 ggcgtcgatg cttacttggt acaggtgtgt atccctccat tgtgctagat cctcatggca 1860 gcggagatct gactcagtga acggcgacac atatgcttca ggttgtggag ggaatagctt 1920 gtttgcggag tattcaagcc attgaagctt ggtagcccat tcatgtggga actcctcctt 1980 gatcatgtca agatattcct ccttagacgt tgcagtctgg ataatagttc gccatcgtgc 2040 gtcagatttg cgaggagaga ctttatgatc tctgaaatct cctcttgttt taatatctcc 2100 gtccttggaa atgtattcaa ggacttgttt agagtttcta gctggctgga tattagggtg 2160 atttccttca aaatcgaaaa aagaaggatc cctaatccaa ggttttttat caagctggac 2220 aagagcatga tagtgggtag tgccatcttg atgaagctca gtagcaagac caaggaagaa 2280 aataagaaaa ggtgtgagtt tctcccagag aaactcgaat aaatcatctc tttgagatga 2340 gcatttaggg taggtaagga aaacatattt tgattggaat ctgaagttct tgtttgcaga 2400 aggcatgttt gttgtgactc caagggttgg cttgaaactc tatcttataa ccggcgtgga 2460 gacttgtaga caagggtagt ttggtcattt aggctgggta atggaataat gacatggcag 2520 tgacttaaag acgaagtctt tgcgaaagcg aataaggggg agccacgccg aaattaatat 2580 t 2581 //