ID AM849096; SV 1; circular; genomic DNA; STD; VRL; 2561 BP. XX AC AM849096; XX DT 17-JUL-2008 (Rel. 96, Created) DT 04-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Chickpea chlorotic dwarf virus complete genome, clone ccdv 14 XX KW C1 gene; C1:C2 gene; coat protein; movement protein; Rep; Rep A; V1 gene; KW V2 gene. XX OS Chickpea chlorotic dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2561 RA Nahid N.; RT ; RL Submitted (22-AUG-2007) to the INSDC. RL Nahid N., Plant Biotechnology Division, NIBGE, Jhang Road Faisalabad, P.O. RL Box 577, 38000, PAKISTAN. XX RN [2] RX DOI; 10.1007/s00705-008-0133-7. RX PUBMED; 18566736. RA Nahid N., Amin I., Mansoor S., Rybicki E.P., van der Walt E., Briddon R.W.; RT "Two dicot-infecting mastreviruses (family Geminiviridae) occur in RT Pakistan"; RL Arch. Virol. 153(8):1441-1451(2008). XX DR MD5; 5b56f233f1542052af334b77739b04fd. XX FH Key Location/Qualifiers FH FT source 1..2561 FT /organism="Chickpea chlorotic dwarf virus" FT /mol_type="genomic DNA" FT /country="Pakistan:Faisalabad" FT /isolation_source="chickpea leaf" FT /collection_date="2005" FT /clone="ccdv 14" FT /db_xref="taxon:463360" FT CDS 129..407 FT /gene="V1" FT /product="movement protein" FT /db_xref="GOA:B4ER99" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B4ER99" FT /protein_id="CAO91913.1" FT /translation="MERILYQVFPSDTNYSYDPPAVTAPSQGSSQTDFGKVVIALVVIL FT VSVGVFHLAYTLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPGP" FT CDS 420..1157 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:B4ERA0" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B4ERA0" FT /protein_id="CAO91914.1" FT /translation="MSTVTWGKKRKRSGGDSKAKSRGSSSYIPRSVSSRRESLQVATFS FT WTSSGSGIKFSPGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTIYLDSSHYMKVFR FT APFHFWLVYDKSPGANVPSTGDIFEGPSLFPHNPWTWTVSRAACHRFVVKKTWSCVVES FT NGIDPTKGQGATYYGPGPCNQVKSCNKFFKRLGVSTEWKNSATGDVGDIKEGALYIVGA FT PSQKSDVYVNGYFRVYFKSVGNQ" FT CDS complement(join(1308..1721,1808..2398)) FT /gene="C1:C2" FT /product="Rep A" FT /function="replication associated protein" FT /db_xref="GOA:B4ERA1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B4ERA1" FT /protein_id="CAO91915.1" FT /translation="MPSASKNFRLQSKYVFLTYPKCSSQRDDLFQFLWEKLTPFLIFFL FT GVASELHQDGTTHYHALIQLDKKPCIRDPSFFDFEGNHPNIQPARNSKQVLDYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK FT LFPPQPEQYVSPFTESDLRCHKDLHNWRETHLYHDEGRTGVRHPSLYICGPTRTGKTTW FT ARSLGRHNYWNGTIDFTNYDEHATYNIIVDIPFKFVPLWKQLIGCQSDFTVNPKYGKKK FT KIKGGIPSIILCNPDEDWMLSMTSQQKDYFEDNCVTHYMCDGETFFARESSSH" FT exon complement(1308..1721) FT /gene="C1:C2" FT /number=2 FT CDS complement(1520..2398) FT /gene="C1" FT /product="Rep" FT /function="replication" FT /db_xref="GOA:B4ERA2" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B4ERA2" FT /protein_id="CAO91916.1" FT /translation="MPSASKNFRLQSKYVFLTYPKCSSQRDDLFQFLWEKLTPFLIFFL FT GVASELHQDGTTHYHALIQLDKKPCIRDPSFFDFEGNHPNIQPARNSKQVLDYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK FT LFPPQPEQYVSPFTESDLRCHKDLHNWRETHLYHVSIDAYTFIHPVSYDQAQSDLEWMA FT DLTRMREGLGSDTPASTSADQLVPERPPGLEVSGDTTTGTGPSTSPTTMNTPPIISSST FT SPSSSSHCGSN" FT intron complement(1722..1807) FT /gene="C1:C2" FT /number=1 FT exon complement(1808..2398) FT /gene="C1:C2" FT /number=1 XX SQ Sequence 2561 BP; 685 A; 496 C; 636 G; 744 T; 0 other; accggcgtgg ccccacctta tcgcgagtgc tttagcacga gcggtgcaga tttaaagtag 60 aaaagttccc gcccactagg gttaaaggtg ttcacactat aaaagcatat acgatgtgat 120 ggtatttgat ggagcgtata ttgtatcagg tatttccgtc ggatacgaat tattcgtacg 180 accctcctgc agtaactgct ccttcacagg gttcatctca aacggatttc ggtaaggttg 240 ttattgcttt ggtggttatc ttggtcagcg taggtgtttt ccatctggcc tataccttgt 300 tcttgaagga ctgcatcctt ctgttcaagg cgaagaagca gagaaccaca accgaaatcg 360 ggtttggaca aaccccggct agaaatcagg atcatccagg accgtaggcg gggtgcatca 420 tgtctactgt gacatggggt aagaagcgga agcgaagcgg aggggattct aaggcgaaga 480 gtaggggctc cagttcctat attccaagat ctgtttcctc caggagagaa tcgttgcagg 540 ttgctacctt ttcctggacg agttccggtt cgggtataaa gttctctccc ggtggtgctg 600 cttatcttgt gagcaatttt ccacagggtg ccaacgataa ttgtcgtcac accaacaaga 660 ccgtgttata caaattcatg gccaagaata ctatatactt ggactctagt cactatatga 720 aagtgtttag agctccattt catttttggc tggtgtacga caagtctcct ggtgctaatg 780 ttcccagtac tggggatata tttgagggac cttcgttgtt tcctcataat ccttggacgt 840 ggactgtgtc tagggctgct tgccatcgtt ttgtggtgaa gaaaacgtgg tcatgcgtgg 900 tggagagcaa tggtattgac ccaaccaaag gtcaaggagc tacttattat gggcctgggc 960 cttgtaatca ggttaagtcc tgtaataagt tctttaagag attgggtgtg tccacagagt 1020 ggaaaaatag tgcaacgggt gatgttggtg atataaagga aggagccctt tacattgttg 1080 gtgctccttc ccaaaagtcc gatgtatatg taaatggtta tttccgagtg tacttcaagt 1140 cagttggaaa tcaataaaat gattatttta tgaatatatt tcattgtgca agtagataga 1200 aattacatat gttacataac acacgaaata aacaaaaaaa cacaatccaa aacaaacacc 1260 ccaaacaaaa taacactata tatatcctcg tatgaggaga ggcacgttca gtgactcgac 1320 gattcccgag caaaaaaagt ctccccgtca cacatatagt gggtgacgca attatcttca 1380 aagtaatcct tctgttgact tgtcattgat aacatccagt cttcgtcagg attgcaaaga 1440 attatagaag ggatcccacc ttttattttc ttcttttttc catatttagg gttgacagtg 1500 aaatcagact ggcaacctat taattgcttc cacaatggga cgaacttgaa ggggatgtcg 1560 acgatgatat tataggtggc gtgttcatcg tagttggtga agtcgatggt cccgttccag 1620 tagttgtgtc gcccgagact tctagcccag gtggtctttc cggtacgagt tggtccgcag 1680 atgtagaggc tggggtgtct gaccccagtc cttccctcat cctggttaga tcggccatcc 1740 actcaaggtc agattgtgct tgatcgtagg agacaggatg tatgaaagtg taggcatcga 1800 tgcttacatg atataggtgc gtctctctcc agttgtgcag atctttgtgg cagcggagat 1860 ctgattctgt gaagggcgac acgtactgct caggttgtgg aggaaataat ttgttggctg 1920 aatattccag ccattgaagc tttgttgccc attcatgagg gaattcttct ttgatcatgt 1980 caagatactc ctccttagac gttgcagtct ggataatagt tcgccatcgt gcgtcagatt 2040 tgcgaggaga gaccttatga tctcggaaat ctcctctggt tttaatatct ccgtcctttg 2100 atatgtaatc aaggacttgt ttagagtttc tagctggctg gatattaggg tgatttcctt 2160 caaaatcgaa aaaagaagga tccctaatac aaggtttttt atcaagctgg ataagagcat 2220 gatagtgggt agtgccatct tgatgaagct cagaagcaac accaaggaag aaaataagaa 2280 aaggtgtgag tttctcccag agaaactgga ataaatcatc tctttgagat gagcacttgg 2340 ggtaggtaag gaaaacatat ttagattgga gtctgaagtt cttgctagca gaaggcatgt 2400 tgttgtgact ccgaggggtt gcctcaaact ctatcttata accggcgtgg aggcatggag 2460 gcaagggcat tttggtaatt taagtagtta gtggaaaatg acgtcattta cttaaagacg 2520 aagtcttgcg acaagggggg cccacgccga attttaatat t 2561 //