Dbfetch
ID AM774304; SV 1; circular; genomic DNA; STD; VRL; 2758 BP. XX AC AM774304; XX DT 07-JAN-2010 (Rel. 103, Created) DT 11-AUG-2010 (Rel. 105, Last updated, Version 2) XX DE Cotton leaf curl virus-[Burewala] DNA A, complete sequence, clone KoB XX KW AC1 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; C4 protein; Coat protein; KW pre-coat protein; replication associated protein; KW replication enhancer protein. XX OS Cotton leaf curl Burewala virus - [India:Vehari:2006] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2758 RA Amrao L.; RT ; RL Submitted (24-JUL-2007) to the INSDC. RL Amrao L., Plant Biotehnology Division, NIBGE, Jhang Road, Faisalabad, P.O. RL Box 577, PAKISTAN. XX RN [2] RX DOI; 10.1016/j.virusres.2010.06.019. RX PUBMED; 20600387. RA Amrao L., Amin I., Shahid M.S., Briddon R.W., Mansoor S.; RT "Cotton leaf curl disease in resistant cotton is associated with a single RT begomovirus that lacks an intact transcriptional activator protein"; RL Virus Res. 152(1-2):153-163(2010). XX DR MD5; bd95c0b1933c527b4108834db6ddd68c. XX FH Key Location/Qualifiers FH FT source 1..2758 FT /organism="Cotton leaf curl Burewala virus - FT [India:Vehari:2006]" FT /mol_type="genomic DNA" FT /country="Pakistan:Faisalabad" FT /collected_by="Luqman Amrao" FT /collection_date="Jul-2005" FT /clone="KoB" FT /tissue_type="leaf" FT /db_xref="taxon:418448" FT CDS 132..488 FT /transl_table=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D2N246" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2N246" FT /protein_id="CAO85808.1" FT /translation="MWDPLLNEFPDTVHGLRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT CDS 292..1062 FT /transl_table=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:B7ZEN5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B7ZEN5" FT /protein_id="CAO85809.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1059..1463) FT /transl_table=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:D2N1Z7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2N1Z7" FT /protein_id="CAO85810.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY" FT CDS complement(1534..2595) FT /transl_table=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:D2N249" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2N249" FT /protein_id="CAO85811.1" FT /translation="MAAPKRFKVQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTGSAHFHPNIQGAKSSSDVKAYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRGIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYTEFLNEEKNTALKNWALKNAILITLEGPL FT YSASNQSTAQGSE" FT CDS complement(2136..2681) FT /transl_table=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2N250" FT /protein_id="CAO85812.1" FT /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIISS FT LIHSAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSAQITDS FT STWYPQPGQHISIRTFRELNQAQMSRRTSTRTGTLSSGESFRSMEDQQEEDSRQPTTLT FT PQHLTQAVSQRLLESLRN" XX SQ Sequence 2758 BP; 716 A; 549 C; 651 G; 842 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taattctccc gcctattata agtacttcgt tgctaagtat 120 gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtctta 180 ggtgtatgtt agcagttaaa tatttgcagt tagtagagaa aacttactct cctgatacat 240 tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag 300 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg tctcaacttc 360 gacagcccat atgtgagccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca 420 tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat 660 gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt tagagatcgt 720 agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc 780 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat 840 gcaactgtca ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt 900 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga gaatcattct 960 gagaatgctt taatgttgta tatggcgtgt actcacgcct ctaacccagt gtatgctacc 1020 ttgaagatac ggatctactt ctatgattcc gtgacaaatt aataaatatt gaattttatt 1080 gaagatgatt ggtctacaaa tacaacatgt tgtaatacat tccataatac atgatcaact 1140 gctctaacta cattattaat actgacaatt cctaagttat ttaaatattt tagcacttga 1200 gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca gattcggaaa 1260 gctatgaaac atttgtgtat ccccaacgct ttcctcaggt tgtgattgaa ctggatcctg 1320 atcgtgagta tatccatatt cgtcgtgaat ggacggttga cgtggctgat gatcttgaaa 1380 tagaggggat ttggaacttc ccagatatat gcgccattcc ctgcttgagc tgcagtgatg 1440 ggttcccctg tgcgtgaatc catggttgtg gcagttgatt gacagataat aagaacaccc 1500 gcattcaaga tctactctcc tcctcctgtt gcgttattcg cttccctgtg ccgtactttg 1560 attggaagct gagtacagtg gtccttcgag agtgatgagg attgcatttt ttaaggccca 1620 attctttaat gctgtgtttt tttcctcgtt gaggaattcc gtataactgc tgttcggacc 1680 aggattgcac aggaagattg tcggtatccc gcctttaatt tgaactggct ttccgtattt 1740 tgtgttggac tgccagtctc tttgggcccc catgaactct ttaaagtgtt tgaggaaatg 1800 cgggtcgacg tcatcaatga cgttgtacca ggcgtcgtta ctgtatactt tgggactcag 1860 gtctagatgt ccgcacaaat agttatgtgg tcccaatgat ctagcccaca tcgtcttccc 1920 cgttcgacta tctccctcaa ttactatacc ccgaggtcta aggggccgcg cagcggcatc 1980 gacaacgtta tcgatggccc aaacttcaag ttcttctgga acttgatcga aagaagaagg 2040 agaaaaagga gaaatatagg gagccggtgg ctcctgaaag attctgtcta gatttgcatt 2100 taaattatga aattgtagta caaaatcttt aggagctagt tccttaatga ctctaagagc 2160 ctctgactta ctgcctgcgt taagtgctgc ggcgtaagcg tcgttggctg tctgctgtcc 2220 tcctcttgct gatcttccat cgatctgaaa ctctccccac tcgagagtgt ccccgtcctt 2280 gtcgatgtac gccttgacat ctgagcttga tttagctccc tgaatgttcg gatggaaatg 2340 tgctgacccg gttggggata ccaggtcgaa gaatctgtta tttgtgcaga cgaatttgcc 2400 ctcgaactgg atgagcacat ggagatgagg gctcccatct tcgtgtaact ctctgcagag 2460 tttgatgtat tttttattcg agggtgtgtt gatggcttga atttgggaaa gtgcttcctc 2520 tttagtgagt gagcactgtg gataagtgat gaaataattt ttggcttgta ctttaaaacg 2580 tttgggggca gccattgact ttggtcaatt agagacaact gatgggcttt tactctggga 2640 attggagact ggatacaatt tatagtgtct ccaaatggca tattctgtaa ataactagaa 2700 gttcgtttga aattcaaatt ctcctttggg ctccaaaagc ggccatccgt ataatatt 2758 //