Dbfetch
ID AM747291; SV 1; circular; genomic DNA; STD; VRL; 2742 BP. XX AC AM747291; XX DT 07-JAN-2010 (Rel. 103, Created) DT 07-JAN-2010 (Rel. 103, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus - Bitter Gourd DNA A, complete sequence, DE isolate Mn-05 XX KW c1 gene; c2 gene; c3 gene; c4 gene; coat protein; complete viral segment; KW cp gene; pre-coat protein; replication association protein; KW replication enhancer protein; transcription activator protein; v2 gene. XX OS Tomato leaf curl New Delhi virus - Bitter Gourd OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2742 RA Tahir M.; RT ; RL Submitted (16-JUN-2007) to the INSDC. RL Tahir M., School of Biological Sciences, University of the Punjab, Lahore, RL 54590, PAKISTAN. XX RN [2] RA Tahir M., Haider M.S., Briddon R.W.; RT "Diversity of Begomovirus in Punjab Pakistan"; RL Unpublished. XX DR MD5; 445cb9dcbb5eb4f920ceaec9d8e38d92. XX FH Key Location/Qualifiers FH FT source 1..2742 FT /organism="Tomato leaf curl New Delhi virus - Bitter Gourd" FT /host="Bitter Gourd" FT /isolate="Mn-05" FT /mol_type="genomic DNA" FT /country="Pakistan:Multan" FT /isolation_source="leaves" FT /collected_by="Muhammad Tahir" FT /collection_date="18-Jun-2005" FT /clone="BGAM" FT /db_xref="taxon:337450" FT CDS 41..460 FT /transl_table=1 FT /gene="v2" FT /product="pre-coat protein" FT /function="movement" FT /db_xref="GOA:D2N1V4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2N1V4" FT /protein_id="CAO00516.1" FT /translation="MKSTLHGFFTAWGPINRLAHQVWIHKHVGVHYCTNFPESVHGLRC FT MLAVKYLQEIEKSYSPDTIGYDLVRDLILVLRAKNYGEATSRYHHFNARIEGTPTSQLR FT QPLWSSCSCPHCPRHKSKGLDQQADEQKTQNVQNV" FT CDS 282..1052 FT /transl_table=1 FT /gene="cp" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:D2N1V5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D2N1V5" FT /protein_id="CAO00517.1" FT /translation="MAKRPADIIISTPVSKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1049..1459) FT /transl_table=1 FT /gene="c3" FT /product="replication enhancer protein" FT /db_xref="GOA:D2N1V6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2N1V6" FT /protein_id="CAO00518.1" FT /translation="MMMDSRTGEYITADRAESGVYTWEIRNPLYFKILDHASRPFLTQH FT DIIKIQIQFNHNMRKALGLHKCFLTFKIFTGLRPQTGLFLRVFRTQVLRYLDMLGVIGI FT NNVFRAVYHVLDNVLEQTIEIWSSYDIKLDIY" FT CDS complement(1179..1598) FT /transl_table=1 FT /gene="c2" FT /product="transcription activator protein" FT /db_xref="GOA:D2N1V7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2N1V7" FT /protein_id="CAO00519.1" FT /translation="MQSSSHSKSHSIPVAKTSLPHKRKKSIRRKRVDLPCGCTYYISIN FT CHDDGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFGPRQQTILNTARHNQDSNTVQPQH FT AESAGTSQVFSNFQDLHGLTPSDWAFLESFQNPGP" FT CDS complement(1501..2586) FT /transl_table=1 FT /gene="c1" FT /product="replication association protein" FT /db_xref="GOA:D2N1V8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2N1V8" FT /protein_id="CAO00520.1" FT /translation="MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLQTLENPTSKKFIK FT ICRELHEDGSPHIHVLIPFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINMGNKDDALKVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPPELVDWVNVNVVCAAARPFRPISIIIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFMCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPTQEEEEHSQEAS" FT CDS complement(2253..2429) FT /transl_table=1 FT /gene="c4" FT /product="C4 protein" FT /function="pathogenicity determinant" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2N1V9" FT /protein_id="CAO00521.1" FT /translation="MGLRISMFSSHSKGNSSARITDSSTWFPQVGQHISIRTFRELNRH FT RTSKHTSIKTETF" XX SQ Sequence 2742 BP; 752 A; 592 C; 601 G; 797 T; 0 other; accgaatggc cgcgcacatt tttagctggg ccttcaacca atgaaatcca cgctacatgg 60 cttctttact gcgtggggac caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggagtc cattattgca cgaatttccc tgaaagcgtt catggtctga ggtgcatgct 180 agctgtaaaa tatcttcaag agatagaaaa gagctattcc ccagacacga tcggctacga 240 tcttgtccga gatctcatcc ttgtccttcg agcaaagaac tatggcgaag cgaccagcag 300 atatcatcat ttcaacgccc gtatcgaagg tacgccgacg tctcaacttc gacagcccct 360 atggagctcg tgcagttgtc cccattgccc gcgtcacaaa agcaaaggcc tggaccaaca 420 ggccgatgaa cagaaaaccc agaatgtaca gaatgtatag aagtcccgac gtgccaaggg 480 gctgtgaagg cccttgtaaa gtgcagtcct ttgagtctag gcacgatgtc tctcatattg 540 gcaaggtcat gtgtgttagt gatgttacac gaggaactgg actcacacat cgcgtaggga 600 agcgattttg tgtgaaatcc gtctatgtgc tggggaagat atggatggat gaaaacatca 660 agacaaaaaa ccatactaac agtgtcatgt tttttttagt tcgtgatcgt cgtcctacag 720 gatctccaca agattttggg gaagttttta acatgtttga caatgaaccg agcacagcaa 780 cggtgaagaa catgcatcgt gatcgttatc aagtcttacg gaagtggcat gcgaccgtga 840 cgggaggaac atatgcatct agggagcaag cattagttag aaagtttgtt agggttaata 900 attatgtagt ttataatcaa caagaggccg gcaagtatga gaatcatact gaaaacgcat 960 taatgttgta tatggcctgt actcatgcat caaatcctgt atatgctact ttgaaaatcc 1020 ggatctattt ttatgattcg gtaacaaatt aataaatatc cagttttata tcatatgaac 1080 tccatatctc aatcgtttgc tccaatacat tatccaatac atgataaact gctctaaata 1140 cattattaat tcctataaca cctagcatat ccaggtacct aaggacctgg gttctgaaaa 1200 ctctcaagaa aagcccagtc tgagggcgta agcccgtgaa gatcttgaaa gttagaaaac 1260 acttgtgaag tcccagcgct ttccgcatgt tgtggttgaa ctgtatttga atcttgatta 1320 tgtcgtgctg tgttaagaat ggtctgctgg cgtggtccaa aattttgaaa tacaggggat 1380 ttcgaatttc ccaggtatat acgccactct ctgctcgatc cgcagtgatg tactcccctg 1440 tgcgtgaatc catcatcatg gcagttgatc gatatataat acgtacaccc acacggcaga 1500 tcaactcgct tcctgcgaat gctcttcttc ctcttgtgtg ggagcgatgt tttcgcgacc 1560 ggaatagagt ggctcttcga gtgtgatgaa gactgcattc ttgattgccc actgcttcag 1620 tgctgcattt ttttcctcgt ccagatattc cttatagctg ctgtttggac ctttattgca 1680 catgaagata gtgggaattc ctcctttaat catgaccggc tttccgtact ttgtattgct 1740 ttgccagtca cgctgggccc ccatgaattc tttaaagtgc tttaaatagt ggggatcgac 1800 gtcatcaatg acgttgtacc atgcatcatt gctatacacc tttgggctca gatcgagatg 1860 tccacacaag taattgtgtg gtcctaagca acgagcccac attgttttgc ccgttctact 1920 atcaccctct atgattatgc ttataggtct aaatggccgc gcagcggcac aaacaacatt 1980 tacattgacc caatcgacga gttctggagg aactctgtcg aaggaagaaa ttgaaaatgg 2040 agaaacgtaa acctcagaag gaggttgaaa aatacgatct aaattggtat ttaaattgtg 2100 aaactgcaga acataatcct ttggagctaa ttcctttaat actttcaacg catcgtcttt 2160 atttcccata ttaatcgcct ttgcatatgc atcgttggcc gtctgctgtc caccacgagc 2220 agatcgtcca tcgatctgga aaacacccca ttctagaacg tctccgtctt tatcgatgta 2280 tgctttgacg tccgatgccg atttagctcc ctgaatgttc ggatggaaat gtgctgaccg 2340 acttggggaa accaagtcga agaatctgtt attcttgcac tggaatttcc cttcgaatgg 2400 gatgagaaca tggatatgcg gagacccatc ctcgtgaagc tcccgacaga ttttgatgaa 2460 tttcttcgaa gtcgggtttt ctagggtttg caattgggaa agtgcctctt ctttagttag 2520 agagcatttt ggatacgtga ggaaatagtt tttggcattt attctaaaac gacttggcgg 2580 agccataaaa cttgtcgttt gggtctggtg tctctcaact ctctctatgt aattggtgtc 2640 tggggtccta tatataggta agaccctaaa tggcagaatt gtaattttga aaataaaatt 2700 actttaattc aaattcccta aagcggccat tcgcataata tt 2742 //