Dbfetch
ID AM745758; SV 1; linear; genomic RNA; STD; VRL; 7212 BP. XX AC AM745758; XX DT 05-JUN-2008 (Rel. 96, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 2) XX DE Lettuce virus X complete genome XX KW coat protein; complete genome; CP gene; RdRp gene; KW RNA-dependent RNA polymerase; TGBp1 gene; TGBp2 gene; TGBp3 gene; KW triple-gene-block protein 1; triple-gene-block-protein 2; KW triple-gene-block-protein 3. XX OS Lettuce virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-7212 RA Winter S.; RT ; RL Submitted (05-JUN-2007) to the INSDC. RL Winter S., Plant Virus Division, DSMZ, c/o BBA, Messeweg 11/12, 38104, RL GERMANY. XX RN [2] RX DOI; 10.1007/s00705-008-0191-x. RX PUBMED; 18807116. RA Dizadji A., Koohi-Habibi M., Izadpanah K., Dietrich C., Mossahebi G.H., RA Winter S.; RT "Characterisation of lettuce virus X, a new potexvirus infecting lettuce in RT Iran"; RL Arch. Virol. 153(10):1867-1875(2008). XX DR MD5; b70d1601ef3bd92bfa41fb3e14955e41. XX FH Key Location/Qualifiers FH FT source 1..7212 FT /organism="Lettuce virus X" FT /host="Lactuca sativa" FT /mol_type="genomic RNA" FT /country="Iran:Karaj" FT /identified_by="Stephan Winter" FT /db_xref="taxon:447171" FT CDS 93..5219 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:B3CJG2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:B3CJG2" FT /protein_id="CAN88808.1" FT /translation="MSRIRNVLDRIRDPSVQTAICESAYTQIRPVLKEALINCPYALND FT NEADALENLGISVNPYAVQTHTHAAAKAIENQMLQIVGHHLPKSKVTFLFLKRSKLRYL FT RRAAALKDTFMNKEVEPKDFFRYDSDTIHSRIQEVSTSVAYMSDTLHFMTLEELAHLFE FT SSPRLDTLLATVVLPVEALHRKTSLHPAVYSINYNKDGFEYIPGNHGGGAYFHPYNTLE FT WLKVRQLECAPRYKFGRPFTLTFQMVESLGANHLFIIRRGLFETPQYRTFCRNTFVLFP FT KIFHPASSNANRPITKTKAMQMWLYVKAVKAVTERDIYAKIHQVLPTNELELYEPDELV FT HLANYFFFLSNLKSYTCYEDLLSGGLIKRLTRPVRTAVTRFIEFFAGRNDFNKLMDALK FT WEPFTYTLEPAVYKTKVGSHVIHQTMEATGRTESAVIRDLLAAHQNPDLLQPEDLIPTE FT PPTFLDRTLFQGSADSTQPRADHQRDAAPTRPTTARTTEDRQAGGPEPEPELETTTTPA FT PTPSTLVTEAAGTTPSTSHPPQTEASTSTGMPHVTQDPNPMPQSAATDEEERHKRDPTK FT MCVCASGWSPEPFFDLVPGSLVTKLKTRDAFFFSTRPDITYGHDKVSYARNDWPLVLTD FT FLRTVGFQANGALLQIYAKGPGIPWHKDDEPCYDGQPILTLNFGQATFEFSNGVKMPLK FT DGEYFVMAGPWLKLKHRVTNCSSNRMSITFRTHTHTIFGHPLPGDSVNPKPEDKPRPAP FT GNQTPPAPASKETPPPQSTHQATDDSTSPFQANTSNRTRGQAPPHPQTAGHHDGDSNEL FT PKKNFSHSPPWNAWIPLLNAHGFNGHEQQLNPEGFLIIPISDVKQLPHCPFPDTVPKLL FT QENLKRMRRFPTPITLRAKRAAAYASDVKNNRTGKLLSSMDLAWKASLAYKMQFDDLIL FT PGIVIHGCGGSGKSQMIQSFMASPLAEENNVTVITPTVELRNDWATKVPNVTAENFKTF FT EKAMIQPCNSVVVFDDYTKLPPGYIEALLMHHRNVDLFILTGDSRQSVYHESNSEAYIS FT TLSEAVEVFEPYSEFYVNATHRNVTGLANKLGVYSERQGKLRVSFSTHHLKGSRIPLLV FT PSNLKRNAFLDVGHRTMTYAGCQGLTAPKVQILLDNHTEMCSERVLYTALSRAVDQIHF FT INTGPNSSDWWAKLESTPYLKAFIDTYRDERTEALISAPREPTPPQVPAPKTHFPPAPK FT HLLEPLVASLTDKESRELFNENTGMSNAIQTEDPVVQLFQHQQAKDETLYWATIEARLS FT ISTPEANVKEFALKRDVGDVLFANYAKIMHLPDQPVPFDPRMWEISAAEVKNVYLSKPV FT GNLVNAATRQSPDFPSDKIALFLKSQWVKKTEKLGVLKVKPGQTIASFMQETVMLYGTM FT ARYLRKMRARYQPDNIFINCEKTPEDLNEFVKTRWNFNVQAHTNDFTAFDQSQDGAMLQ FT FEVLKAKFFNVPADIIEGYITIKLNANIFLGTLSIMRLSGEGPTFDANTECSIAYNATR FT FHLDDSVAQVYAGDDMALDHKVPEKASFIRLQQKLKLTSKPLYPTQTPGDYAEFCGWSF FT TPDGIMKASLKMHASIELQKRINNFHESARSYALDLKYAYDMGDLLHDHLTEAEAEYHV FT QSVRDMHLAHQQDVLVNGAASPPTSPVHSGSQARSSFVTKLVGSAKTKARNASKRRAKV FT RVVDLSTNTFA" FT CDS 5247..5951 FT /transl_table=1 FT /gene="TGBp1" FT /product="triple-gene-block protein 1" FT /db_xref="GOA:B3CJG3" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B3CJG3" FT /protein_id="CAN88809.1" FT /translation="MAVPLLHKLLLENEFQRTATPLSYPIIIFGTAGSGKTTIIRLLAA FT AYPDLHFSSFRPCLLLPNTRRSQVAANPLTPTDVLDEFLAGPNPAVSLAKFCDPLQYNC FT TDLPLPHYTSNHTYRFCPATCDLLNQLFSTTLSSRLPTAASITRPDPYSQDPSGTVVAL FT EQDLLDILKQHGAFPKKPAELTGQTLPAVAFYCSSLQDAYDADPAATFIALTRHTTKLE FT IFELDARPDPTA" FT CDS 5926..6267 FT /transl_table=1 FT /gene="TGBp2" FT /product="triple-gene-block-protein 2" FT /db_xref="GOA:B3CJG4" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:B3CJG4" FT /protein_id="CAN88810.1" FT /translation="MPGLTPPPNHEHTFQIIAIGFLCCGIIYALRTNHAPHTGDQQHSL FT PFGGHYQDGTKRVIYNSPSYPNVRCSKLLALAAILGLSAFILGNQWYSRRSVTRIHTCV FT HCSNVPPSL" FT CDS 6125..6379 FT /transl_table=1 FT /gene="TGBp3" FT /product="triple-gene-block-protein 3" FT /db_xref="GOA:B3CJG5" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B3CJG5" FT /protein_id="CAN88811.1" FT /translation="MSDAPSSWPWRRSSGCQPLSWAINGTLGALLLVFILVCIAPTYHH FT PCRVVISGHTITITDCPNAAEILRGLDVAPWNGVKFPQL" FT CDS 6410..7138 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:B3CJG6" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B3CJG6" FT /protein_id="CAN88812.1" FT /translation="MGTPQAVNTPVNNPPRPTPVLQRPPANSSGPNLADPNRAPSMEDL FT AQVKYVSSSSAVATPAQITKLGEWFVKVGIEPNSTGPAMWDLARAYADVQASRSAMLTG FT ASAADPNVSRQSLARQLDAVFLTPRQFCMYFAKVVWNILLTTQVPPASWAKLGYSYDCR FT FAAFDFFDGVLNPAALDPADGLVRQPSPREIQAHQVAKSASLARQRISEGNFVSSLSDV FT THGRIGGINSMYAIEAPPEF" XX SQ Sequence 7212 BP; 1841 A; 2422 C; 1518 G; 1431 T; 0 other; ggaaaactaa acaaaacaaa cgaaaacaaa cttaaacctc tccacacata accacaggcc 60 aaaaccggaa aacccctcca ctttcgccta ttatgtcgag aattcgtaac gttttggata 120 ggatcagaga cccctccgta caaactgcta tttgcgaatc cgcttataca caaatacggc 180 cagtcctgaa agaagcccta attaactgcc cttacgctct gaacgacaat gaggctgacg 240 cactagagaa tttaggcatc tctgtcaacc cctacgctgt tcaaacccac acccacgctg 300 cggctaaagc catcgagaat caaatgctac agattgtggg ccaccaccta cccaagtcca 360 aagtcacctt cctctttctc aagagaagca agctacgcta ccttagaaga gcggccgcac 420 tgaaagacac attcatgaac aaagaagtgg agcccaaaga cttctttcgc tacgactccg 480 acaccatcca ctcccgcata caagaagtca gcaccagcgt ggcgtacatg tccgacacct 540 tacactttat gactcttgaa gagctcgcac acctctttga gtcatcgccc cgactggaca 600 ccctcctggc caccgtagtg cttcccgtgg aggccttgca tcgcaaaacc tcactacacc 660 cggccgtgta ctccataaac tacaataaag acggctttga gtacatccct ggcaaccatg 720 gcggcggagc ttacttccac ccgtacaaca cactggaatg gctcaaagtc cggcagctcg 780 agtgtgcccc aaggtataaa ttcggccggc ccttcaccct gaccttccaa atggtcgagt 840 ccctcggtgc caaccacctc ttcataatca gacgcggtct ttttgaaaca ccccaatacc 900 gcaccttctg ccgcaacacc ttcgtgctgt tcccaaagat cttccaccca gcaagttcga 960 acgcaaaccg gccaatcacc aagaccaagg ccatgcaaat gtggctatat gtgaaggctg 1020 tcaaagcggt aaccgagaga gacatctatg cgaaaataca ccaggttctg ccgacgaacg 1080 aacttgaact ctacgagcca gacgaacttg tgcacctcgc caactacttc ttcttccttt 1140 ccaacctcaa atcttacacc tgttacgagg atctgctgtc tgggggactc atcaaaagat 1200 taacacggcc cgtacgaaca gccgtaactc gattcatcga gttcttcgcc ggccgcaatg 1260 actttaacaa gctgatggat gccctcaagt gggagccctt cacatacacg ctcgagcctg 1320 ccgtctacaa aaccaaagtg ggaagccatg tcatccacca aacgatggag gccaccggcc 1380 gaaccgaaag cgccgtcata agggacctgc tcgccgccca ccagaaccca gacctcctcc 1440 aacctgaaga ccttatccct accgaaccgc caaccttcct agacagaacc ctgttccaag 1500 gctcagccga ctctacccag ccacgcgccg accaccaacg agatgcggca ccaaccaggc 1560 cgacaactgc gcgcaccact gaagacagac aagccggcgg tcccgaaccc gagcctgagc 1620 tggaaacaac aacaacgcca gcgcccacac catcgacctt agtcactgaa gcagctggca 1680 caaccccttc caccagccat ccaccccaaa ccgaagcctc tactagcact gggatgcccc 1740 acgtcaccca agacccgaac cccatgccgc aaagcgctgc taccgacgaa gaagagcgac 1800 acaaaagaga tcccaccaaa atgtgcgtct gcgcatctgg ctggtcacct gaaccttttt 1860 tcgacctggt accaggctct ctagtcacca agctgaagac gagagacgct ttcttcttct 1920 caacacggcc agacatcaca tacggtcacg acaaggtgtc ctacgcgcgg aacgactggc 1980 ccctcgtttt aactgacttc ctacgcacag tgggcttcca agccaatggg gcactcctcc 2040 aaatttacgc caaggggcca ggcattccat ggcataaaga cgacgagccc tgctatgacg 2100 ggcagcccat attgactttg aactttggtc aagctacttt cgagttcagc aatggagtca 2160 agatgccctt aaaagatggg gaatattttg tgatggccgg cccatggctg aaactcaaac 2220 accgagtcac caactgcagc tccaaccgca tgtctatcac cttccgcact cacactcata 2280 cgatctttgg ccaccccctg cctggagaca gtgtgaaccc caaaccagag gacaaaccac 2340 gtcccgctcc tggcaaccaa acccctccag cccccgcgtc caaggaaacg ccaccgccac 2400 agtccacgca ccaggcaact gacgactcca cctccccctt tcaggcaaac actagcaacc 2460 gtacccgcgg ccaggcaccg ccccacccac agacagccgg ccaccacgat ggtgactcta 2520 acgagcttcc aaagaaaaat ttttcccact caccaccatg gaacgcctgg attcccctgc 2580 tgaacgccca cggtttcaac ggtcacgagc aacagttaaa ccctgaaggg tttctcataa 2640 ttcccattag tgacgtgaag cagctaccac actgcccctt cccagacacg gtgcccaagc 2700 tactacagga aaacctgaaa cgcatgcgcc gcttccccac gcccatcacc ctgcgagcca 2760 aacgggctgc agcctacgcc tcagacgtca agaacaaccg cacgggcaaa ctcctgagct 2820 ccatggacct cgcttggaag gctagcctcg cctacaagat gcaatttgac gatctcatac 2880 tcccagggat tgttatccac ggttgcggtg gctccggcaa gtcgcagatg attcagtctt 2940 tcatggcgtc ccccttagct gaggaaaaca acgtcacagt catcacaccc accgttgaac 3000 tacgaaatga ttgggcgacc aaggtaccta acgttacggc ggaaaatttc aaaacatttg 3060 agaaggccat gatccagcca tgcaactccg tggtggtgtt cgacgactac accaagctgc 3120 ccccaggata catcgaggcg ctgctgatgc accaccgtaa cgttgatctt ttcatcctca 3180 caggtgacag ccggcaaagt gtgtaccacg agagcaattc agaagcctac atctctaccc 3240 tctccgaagc cgtggaggtt ttcgagccct acagcgaatt ctacgtcaac gccactcacc 3300 gaaatgtcac cgggctggcc aacaaactgg gagtctactc agaaagacaa gggaagctac 3360 gagtttcctt cagcacccac catctcaaag gctcccgcat acccctactt gtgccttcca 3420 acctgaagcg gaacgctttc ttggacgtgg gccatcgaac catgacgtac gccggctgcc 3480 aaggactaac cgcaccgaaa gttcaaatct tgttggacaa ccataccgaa atgtgctcag 3540 agagggtact ctacaccgca ctatccaggg ccgtcgacca gatccatttc ataaacacag 3600 gccctaactc ctctgactgg tgggctaagc ttgagtcgac cccctacctg aaggccttca 3660 ttgacaccta ccgcgacgaa cgcactgagg ccctgatttc cgcaccccga gaacccacac 3720 ccccgcaggt gcccgctcct aagactcact ttccacctgc gccaaaacac ctgttagagc 3780 ctctggttgc gtcactcacg gacaaggaga gtagggagct attcaacgaa aacaccggca 3840 tgagcaacgc catccaaacg gaagatccag tggtgcaact gtttcaacat caacaggcaa 3900 aggacgagac tctctactgg gccaccattg aagctagact ctccatctca acccctgagg 3960 ccaatgtgaa ggaattcgcc ttgaaacgcg acgtcggaga tgtgctgttc gccaactacg 4020 caaaaattat gcacctgcca gatcaaccgg tgcccttcga cccaagaatg tgggagatct 4080 ccgccgccga ggtcaagaat gtttacctca gcaagcctgt agggaacctc gtcaacgccg 4140 ccactcgcca aagcccagac ttccccagcg acaagatcgc actgttcctg aagtcccaat 4200 gggtcaagaa gacagagaag cttggggtgt taaaagtgaa gcccggccag accatcgcct 4260 cattcatgca agagactgtc atgctctacg ggaccatggc ccgctacctc aggaagatgc 4320 gagctcgcta ccagccagac aacatattca tcaactgcga gaaaacgcct gaggacttga 4380 acgagtttgt caagactaga tggaacttca atgtacaagc ccacaccaat gatttcacgg 4440 ctttcgacca gtcacaggat ggcgccatgc tacagtttga agtcctgaaa gctaagttct 4500 tcaacgttcc ggccgacatc atcgagggtt acatcaccat taagctgaac gccaacatct 4560 tcctcgggac cctaagcatc atgcggctct ccggcgaagg ccccacattc gacgccaaca 4620 ccgagtgttc catcgcctac aatgccacga ggttccattt ggacgactcg gtggcccaag 4680 tgtacgccgg agacgatatg gccttggacc acaaagtgcc ggaaaaagct agcttcatac 4740 ggctgcaaca gaaactcaag cttacctcca agccactcta ccctacccag actcccgggg 4800 actacgctga gttctgcggt tggtcattca cacccgacgg aatcatgaaa gccagcctca 4860 agatgcacgc cagcattgaa cttcagaaac gcattaacaa tttccatgaa agcgcccgct 4920 cctacgcgct agatctgaag tatgcttacg acatgggcga tttactccac gaccatctca 4980 cggaagctga agccgaatac catgtccagt cggtacgcga catgcacctg gctcatcaac 5040 aagacgtact cgtcaacggc gcagccagcc ccccaacaag cccagtacac agtggctcac 5100 aagcgcgcag cagtttcgtc actaaacttg tcggcagtgc taagaccaag gcccgtaatg 5160 ccagcaagcg ccgtgctaag gtacgtgtgg tggacctctc caccaacacc ttcgcatagc 5220 ggggttaagt taccttcgtt ctcgaaatgg ctgtacctct tcttcacaaa ttacttctcg 5280 agaacgaatt tcaaaggaca gccacccccc tctcctaccc cattatcatc ttcggcactg 5340 caggttctgg gaaaacaacc atcattcgcc ttcttgctgc cgcttacccc gacctgcact 5400 tctccagctt ccgaccttgc ctcctccttc caaacacccg ccgttcacaa gttgccgcca 5460 acccgctcac gcccaccgac gtcctagacg aatttctcgc tgggccgaac cctgctgttt 5520 ccttagccaa gttctgcgac cccctccaat acaactgcac tgatttgccg cttccgcact 5580 acacttccaa tcatacctac cggttctgcc cagccacctg tgatctcttg aaccagcttt 5640 tcagcaccac cctttcctct cgtctgccaa ccgccgcctc gatcactcgg cccgacccgt 5700 actcacaaga cccttctggg accgtggtcg ctctcgaaca ggacctgctc gacatcctta 5760 aacaacacgg cgcctttccc aagaaaccag cagagctaac cggccagacc ctgcccgctg 5820 tcgccttcta ctgctcttca cttcaagacg cttacgacgc tgacccggcg gccaccttca 5880 ttgccctgac tcgccatacc accaagttgg agatcttcga gttagatgcc aggcctgacc 5940 ccaccgccta accacgagca cactttccag attatcgcca ttggcttcct atgttgtggc 6000 atcatatacg ccttgcggac gaaccacgcg ccccacacgg gagaccaaca gcattctctt 6060 ccctttggtg gccattacca ggacggcacg aagcgagtca tctacaactc accgtcatac 6120 ccgaatgtca gatgctccaa gctcttggcc ctggcggcga tcctcgggct gtcagccttt 6180 atcctgggca atcaatggta ctctcggcgc tctgttactc gtattcatac ttgtgtgcat 6240 tgctccaacg taccaccatc cctgtagagt ggtcatttcc ggacacacta ttacaatcac 6300 cgattgcccg aatgcagctg aaattctgcg tggtctcgat gtcgccccct ggaacggggt 6360 taagtttcct caattgtgaa actttgagaa ctttcccttt caacatacca tgggaacccc 6420 acaagctgtc aacaccccgg tcaacaaccc gcccaggccg accccagttc tccagcgtcc 6480 tccagctaac tcttccggtc ccaacctcgc cgacccaaac cgcgcacctt ccatggaaga 6540 cctcgcccag gtcaaatatg tgtcttcctc ctccgccgtc gccaccccgg cccaaatcac 6600 caaactcggc gagtggttcg tcaaagtcgg catcgaaccc aactccactg gacctgccat 6660 gtgggacctc gcccgcgctt acgctgatgt gcaggctagc cgttccgcca tgctcaccgg 6720 agcatcggct gctgacccca acgtctcaag acagtccctc gcgagacaac ttgacgcagt 6780 cttcctcacc ccgagacaat tctgcatgta cttcgcaaaa gtcgtgtgga acatcctact 6840 cactacgcaa gttcctccag ctagctgggc aaaactcgga tactcctacg attgccggtt 6900 cgccgctttc gacttcttcg acggagtgct caacccagcc gcccttgacc cagctgacgg 6960 cctcgtcagg caacccagcc cacgggaaat ccaagctcac caagttgcca agtctgcctc 7020 actcgctaga caaagaatct ccgaaggcaa cttcgtctcc agcctctccg atgtcaccca 7080 cggtcgcata ggcggcatca actccatgta cgcgatcgaa gcgccacccg aattttaata 7140 ctccttgccc aacttaaata aggaggtggt tttctacagt ttgttttcca cttacgcctt 7200 tctagcgtaa gt 7212 //