Dbfetch
ID AM712436; SV 1; circular; genomic DNA; STD; VRL; 2764 BP. XX AC AM712436; XX DT 10-JAN-2009 (Rel. 98, Created) DT 27-FEB-2009 (Rel. 100, Last updated, Version 3) XX DE Pedilathus leaf curl virus-Pedilanthus [Pakistan:Multan:2004] complete DE genome XX KW C4 gene; coat protein; complete genome; CP gene; precoat protein; REn gene; KW Rep gene; replication associated protein; replication enhancer protein; KW transcriptional activator protein; TrAP gene; V2 gene. XX OS Pedilanthus leaf curl virus [Pakistan:Multan:2004] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2764 RA Tahir M.; RT ; RL Submitted (18-MAY-2007) to the INSDC. RL Tahir M., School of Biological Sciences, University of The Punjab Lahore, RL 54590, PAKISTAN. XX RN [2] RX DOI; 10.1111/j.1439-0434.2008.01464.x. RX AGRICOLA; IND44155660. RA Tahir M., Haider M.S., Iqbal J., Briddon R.W.; RT "Association of a Distinct Begomovirus and a Betasatellite with Leaf Curl RT Symptoms in Pedilanthus tithymaloides"; RL J. Phytopathol. 157(3):188-193(2009). XX DR MD5; e7dcd91eac3e82eb600ebd441c1c1174. XX FH Key Location/Qualifiers FH FT source 1..2764 FT /organism="Pedilanthus leaf curl virus FT [Pakistan:Multan:2004]" FT /mol_type="genomic DNA" FT /country="Pakistan:Multan" FT /isolation_source="leaves" FT /collected_by="Muhammad Tahir" FT /collection_date="03-Sep-2004" FT /clone="ptv3(2)" FT /db_xref="taxon:587313" FT CDS 97..501 FT /transl_table=1 FT /gene="V2" FT /product="precoat protein" FT /function="movement" FT /db_xref="GOA:B7ZER2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B7ZER2" FT /protein_id="CAN84506.1" FT /translation="MVPPINLVRKLCFTFTYVGSVIDEFPETVHGFRCMLAVKYLQLVE FT STYSPDTLGFDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPICEPCCCPH FT CPRHKGKGMGEQAHEQKAQDVQDVQKSRCS" FT CDS 305..1075 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:B7ZER3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B7ZER3" FT /protein_id="CAN84507.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1072..1476) FT /transl_table=1 FT /gene="REn" FT /product="replication enhancer protein" FT /db_xref="GOA:B7ZER4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B7ZER4" FT /protein_id="CAN84508.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFTMNQDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINN FT VIRAVDHVLWNVLHHVVNIEQSYSIKFNIY" FT CDS complement(1217..1621) FT /transl_table=1 FT /gene="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:B7ZER5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B7ZER5" FT /protein_id="CAN84509.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHSHGFTHRGTHHCSSSREWRVYLGDSKSPLFQDNRAPQQAIHHEPRHHNRPDTVQSQP FT EESVGDTQMFPSLQNLDDLTASDWSFLKGL" FT CDS complement(1524..2696) FT /transl_table=1 FT /gene="Rep" FT /product="replication associated protein" FT /db_xref="GOA:B7ZER6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B7ZER6" FT /protein_id="CAN84510.1" FT /translation="MPFGTHYILSTDIQVINIQNPIGTHLTKSMAPPKRFQIYARNYFL FT TYPHCSLTKEEALSQIQALDTPTNKKFIKICRELHEDGSPHLHVLIQFEGKYRCQNQRF FT FDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLEWGEFQIDGRSARGGQQSANDAY FT AAALNAGSKSEALRVIKELAPKDYVLQFHNLNANLDRIFTPPVEVYVSPFSSSSFDQVP FT EELEVWAAENVMDAAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYS FT NEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSY FT KEFLDEEKNSALKNWALKNAIFVTLEGPLYPGSNQSAAQASQEGDQASTC" FT CDS complement(2150..2452) FT /transl_table=1 FT /gene="C4" FT /product="C4 protein" FT /function="pathogenicity determinant" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B7ZER7" FT /protein_id="CAN84511.1" FT /translation="MGALICTCSSSSKGNTGAKISDSSTWSPQPGQHISIRTFRELNQA FT PTSSPIWRRTETPSNGESFRSMEDLLEGGNNQPTTLTPQRLTQAVSQRLLESLRS" XX SQ Sequence 2764 BP; 737 A; 562 C; 650 G; 815 T; 0 other; accggatggc cgcgcttttt ttatggcccc cacagagcac taactgacaa tgacatgtgg 60 accaatgaga atggctcctc atagcctaat tatttcatgg tcccccctat aaacttagtg 120 cgcaagttgt gtttcacatt cacatatgtg ggatccgtta ttgacgagtt tcccgaaacc 180 gttcacggtt ttaggtgtat gttagcagtt aaatatttgc agttagtaga aagtacgtat 240 tccccagata ctctgggatt cgatttaatt cgggatttaa tttcagtgat aagggctagg 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga aggtacgccg 360 ccgtctcaac ttcgacagcc catatgcgag ccgtgctgct gcccccattg tccgcgtcac 420 aaaggcaagg gcatgggcga acaggcccat gaacagaaag cccaggatgt acaggatgta 480 cagaagtcca gatgttccta gaggatgtga aggcccatgt aaggtccagt catttgagtc 540 cagacatgat atccagcaca ttggtaaagt catgtgtgtt agtgatgtta ctcgtggtat 600 tgggcttacc cacagggtag gcaagagatt ttgtgttaag tccgtttatg ttctgggtaa 660 gatctggatg gatgagaaca ttaaaactaa gaatcatacg aatagtgtta tgttttttct 720 tgttagagat cgtaggcccg ttgacaagcc tcaagatttt ggcgaggttt ttaacatgtt 780 tgataatgag cccagcacgg cgactgtgaa gaatgttcat cgtgatagat accaggtatt 840 aaggaagtgg tacgcaactg tgacaggcgg tcaatatgca tctaaggagc aggctctcgt 900 gaagaagttt attagggtta ataattatgt tgtgtacaac cagcaagagg ctgggaagta 960 tgagaatcat actgagaatg cgttgatgtt gtatatggcg tgtacgcacg cctctaaccc 1020 tgtgtatgct acattgaaga tacggatcta cttctatgat tcagtatcga attaataaat 1080 attaaatttt attgaatatg attgttctat atttacaaca tgatgtaata cattccataa 1140 tacatgatca actgctctaa ttacattgtt aatactgata actcctaaat tatctaaata 1200 cttaagtact tgggtcttaa agacccttaa gaaacgacca gtcggaggct gtgaggtcat 1260 ccagattctg aaggctagga aacatttgtg tatccccaac gctttcctca ggttgtgatt 1320 gaactgtatc tggacggtta tgatgtcttg gttcatggtg aatggcctgt tgtggtgctc 1380 tgttatcttg aaatagaggg gattttgaat ctcccagata aacacgccat tctctgcttg 1440 agctgcagtg atgagttccc cggtgcgtga atccatgact gtgacaggct agtgctatga 1500 aataagaaca tccacaaggg agatcaacac gtcgacgcct ggtccccttc ttggctagcc 1560 tgtgctgcac tttgattgga acctgggtag agtgggcctt cgagggtgac gaagatcgca 1620 ttctttaaag cccaattttt gagtgcagaa ttcttctctt cgtccaagaa ctctttatag 1680 cttgaattgg gtcctggatt gcagaggaag atagtgggaa ttccgccttt aatttgaact 1740 ggctttccgt attttgtgtt gctttgccag tccctttggg cccccatgaa ttctttgaag 1800 tgctttagat aatgcggatc gacgtcatca atgacgttgt accaggcctc attactgtag 1860 acctttggac taaggtctaa gtgaccacac aaataattat gtggacccag tgacctagcc 1920 cacatcgtct tccccgtacg actatcgccc tctatgacaa tacttttagg tctcaatggc 1980 cgcgcagcgg catccatcac gttttcagca gcccagactt caagttcttc cggaacttga 2040 tcaaaagaag aagaagaaaa aggagataca taaacctcca caggaggtgt aaaaatccta 2100 tctaaattag catttaaatt atgaaattgt aatacataat cttttggagc taactcctta 2160 atgactctaa gagcctctga cttactgcct gcgttaagcg ctgcggcgta agcgtcgttg 2220 gctgattgtt gcccccctct agcagatctt ccatcgatct gaaactctcc ccattcgagg 2280 gtgtctccgt ccttctccag ataggacttg acgtcggagc ttgatttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctggttggg gagaccaggt cgaagaatcg ctgattttgg 2400 cacctgtatt tcccttcgaa ctggatgagc acgtgcagat gagggctccc atcttcgtgg 2460 agttccctgc agatcttgat gaatttttta ttggtgggtg tatctagggc ttgtatttgg 2520 gaaagtgctt cttctttagt aagagagcag tgtgggtaag tgaggaaata atttctggca 2580 tatatttgaa aacgcttagg aggagccatt gacttggtca aatgggtacc aattgggttc 2640 tggatgttta tcacctgtat atcggtactc aatatatagt gagtaccaaa tggcataatt 2700 gtaataaaag aactctaatt tgaaattcaa acgaaaaggc taaagcggcc atccgtctaa 2760 tatt 2764 //