ID AM711119; SV 2; linear; genomic RNA; STD; VRL; 4764 BP. XX AC AM711119; XX DT 17-AUG-2007 (Rel. 92, Created) DT 16-OCT-2008 (Rel. 97, Last updated, Version 2) XX DE Lisianthus necrotic virus, genomic RNA, strain Zantedeschia XX KW ORF5; MP gene; p19 gene; p19 protein; coat protein; replicase gene; KW movement protein; RNA-dependent RNA polymerase. XX OS Lisianthus necrosis virus OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; OC Tolivirales; Tombusviridae; Procedovirinae; Tombusvirus; OC Tombusvirus melongenae. XX RN [1] RC revised by [3] RA Chang Y.S.; RT ; RL Submitted (04-MAY-2007) to the INSDC. RL Chang Y.S., Plant Pathology, National Chung Hsing University, 250, Kuo RL Kuang Rd., Taichung 402, R.O.C, TAIWAN. XX RN [2] RA Chang Y.S., Chen Y.K.; RT "Molecular diagnosis of Lisianthus necrosis virus Zantedeschia strain"; RL Unpublished. XX RN [3] RP 1-4764 RA Chang Y.S.; RT ; RL Submitted (16-OCT-2008) to the INSDC. RL Chang Y.S., Plant Pathology, National Chung Hsing University, 250, Kuo RL Kuang Rd., Taichung 402, R.O.C, TAIWAN. XX DR MD5; b32c33a017354d490723f13c2a94e11e. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4764 FT /organism="Lisianthus necrosis virus" FT /host="Zantedeschia jucunda" FT /strain="Zantedeschia" FT /mol_type="genomic RNA" FT /db_xref="taxon:334425" FT CDS join(165..1052,1056..2621) FT /ribosomal_slippage FT /gene="replicase" FT /product="RNA-dependent RNA polymerase" FT /note="readthrough protein" FT /db_xref="GOA:A7M8Y0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:A7M8Y0" FT /protein_id="CAM98052.1" FT /translation="MDRLLNFLRPKKEIFVGDFAIGVDRRPSMDMFQLVCRLALRYMRT FT GKIECNVDSLSQFVVELLKTDCAAKWEWFMKRRSAGDYAIPLALAALPIAPLLGYATKV FT RTVSVKAFGNELTFPFRTLRPSFPRKGLLLRLAAGLALAPVCALAVYATLPREKLSVFR FT LRTEARTHMEDEREATECLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT VAQVARAKVGYLKNSPENRLIYQRVIIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVKGGLVRLPGVVTQTNRDIPSGVLLPQEVLEVRTGPPNAKDRSIFM FT VAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGILTRTPQPAKGAFSRLSPFRKAVC FT EKVGVAHRLGYDGFLSYYSGAKLRTYTRAVESLHISPVCERDSHLTTFVKAEKISTSKG FT DPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGQIFRDKW FT DKFDRPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLSKLLEWQLHNKGKGYVP FT DGTITYRKEGCRMSGDINTSLGNYLLMCAMIYGYMRHLGINEYSPANCGDDCTLIVERK FT HLKRIQGTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFEGGWKMVRNVRTAMSKD FT VHCVNNIKDLATRKAWSNAQHHGGIALSAGIPVVEKFYSRFALYEMPKRHQRIDTVTNV FT HKWRGSGGKYSVTPESRASFWQAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSIL FT DSAVA" FT CDS <165..1055 FT /codon_start=1 FT /gene="replicase" FT /product="33-kDa protein" FT /function="essential for virus replication" FT /db_xref="GOA:A7M8Y1" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:A7M8Y1" FT /protein_id="CAM98053.1" FT /translation="MDRLLNFLRPKKEIFVGDFAIGVDRRPSMDMFQLVCRLALRYMRT FT GKIECNVDSLSQFVVELLKTDCAAKWEWFMKRRSAGDYAIPLALAALPIAPLLGYATKV FT RTVSVKAFGNELTFPFRTLRPSFPRKGLLLRLAAGLALAPVCALAVYATLPREKLSVFR FT LRTEARTHMEDEREATECLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT VAQVARAKVGYLKNSPENRLIYQRVIIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVK" FT CDS 2647..3813 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:A7M8Y2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A7M8Y2" FT /protein_id="CAM98054.1" FT /translation="MEIVRRNNNNAIAINKKQLASMAATAAAGALSNYVKNNGAMIVQG FT AVNMGKKAYGAVRNRRNKGNSQAMVHVGGMGGAMMAPVAVSRQLVGSKPKFAGRTAGSV FT TVTHREYLTQVNNSPAFTTNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYVFNSVMLH FT YVPLCGTNEVGRVAMYWDKDSEDPEPVDRVELANFGILKETAPWAEAILRVPTDKTKRY FT CDDSTVVDRKLIDLGQLGISTYGGTGTNPVGDVFVSYSVTLYFPQPTNTLLSTRQLNLT FT GALEASTGPGYINVTRTPTLLTITFRSTGTFLLSGVFRDTSVAVLGVAGGIGINSQTTL FT DVVGVATSFLVNCTVSTLPATLTYGSAGITSVTANCTRATRANTATLL" FT CDS 3845..4420 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:A7M8Y3" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:A7M8Y3" FT /protein_id="CAM98055.1" FT /translation="MDTEYEQVNKPWNELYKEATLGNKLTVNVGMEDVEVPLLPSNFLT FT KVRVSLSGGYITVRRVRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTELLDLGKEI FT RLTMQHLDFSVSARSDVPIVFGFEDLVSPFLEGRELFSVSLRWQFGLSAQCYSLPPAKW FT KVMYQEEALKALKPSKKKASKTDSSRLE" FT CDS 3877..4395 FT /gene="p19" FT /product="p19 protein" FT /db_xref="GOA:A7M8Y4" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:A7M8Y4" FT /protein_id="CAM98056.1" FT /translation="MERAIQGSDAREQAYSERWDGGCGGTITPFKLPDESPSLIEWRLH FT NSEESEDKDNPLGFKESWSFGKVVFKRYLRYDGTEASLHRALGSWERDTVNDAASRFLG FT FGQIGCTYCIRFRGSCLTISGGSRTLQRLIEMAIRTKRTMLQLAPCEVEGNVSRGSPEG FT TEAFKEESE" FT CDS 4594..4713 FT /product="hypothetical protein" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:A7M8Y5" FT /protein_id="CAM98057.1" FT /translation="MPSRLCGMSLTLIGCQFSTGVAATEQHFEHGWSHPSGGL" XX SQ Sequence 4764 BP; 1212 A; 1022 C; 1335 G; 1195 T; 0 other; agaaattcct cagatttctc cctgtgaccc ggggttatcg gtgagttgcg cttgtgcttt 60 gcgtaaggga tttctctcgt acgggtacga tctacggacc agctacgggt ttgaagggcg 120 ggcctattct tcggaagggt aaattgtaac ttccgccaat aagcatggat agattactga 180 actttctgag acctaagaag gaaattttcg taggtgattt tgcgatcggg gttgacagga 240 ggccatcgat ggacatgttc caattggtgt gtaggttggc tctcagatat atgaggacag 300 ggaaaatcga gtgtaatgtg gacagtcttt cacagttcgt tgttgagttg ttaaagactg 360 attgtgcagc caagtgggaa tggttcatga aacggcgttc cgccggtgat tacgctatcc 420 ctcttgcact ggctgcactg cccattgctc cgctgttggg ctatgccacg aaggttagaa 480 cggtgagtgt aaaggcgttc gggaatgaat tgactttccc attcaggacc cttcgcccaa 540 gcttcccccg taagggcttg ctccttcggc tggcggccgg ccttgcgtta gcacctgtat 600 gcgcgcttgc tgtgtacgct accctaccac gggaaaaact gtctgtattt aggctgagaa 660 cagaagcccg cacacatatg gaggatgaga gggaagcaac ggaatgtttg gtggttgagc 720 cagctcgaga gctcaagggg aaggacgggg aggatctcct cactggtagt agaatgacga 780 aggtaattgc gtctacggga cgccctcgca ggagacctta tgcagctaaa gttgctcagg 840 ttgcaagagc taaggtgggt taccttaaga atagtcctga gaatagatta atctaccaga 900 gagtcattat tgagatcatg gacaaggatt gcgtcaggta tgttgacagg gatgtcatat 960 tgcctttagc tattggatgt tgttttgtct acccggacgg agtggaggag tcggcggcac 1020 tctggggctc tagtgagtcc ctgggtgtga aatagggagg cctagtgcgt ctacctgggg 1080 ttgtgacaca gaccaatcga gatatcccat ctggtgtgtt acttccccag gaagtgctag 1140 aggttcgcac aggacctccc aatgctaagg accgtagtat attcatggtt gctggttgcc 1200 catcacaggc acggttctta gttcataatc attgcctgaa aaaccttaag aggggtcttg 1260 tggagagagt tttctgtgtt gagagaaatg gaattctcac tcgcactcca caacctgcca 1320 aaggagcctt tagtcgtctt tccccgttca ggaaagcggt ttgtgagaag gtcggagttg 1380 cccaccgtct tgggtatgat gggtttctat catactacag cggtgcgaag ctgcgtactt 1440 acacgcgagc cgtggagagt ctgcatatct cccccgtctg tgagagggac agtcatttga 1500 ctaccttcgt caaggcggag aagatatcga cgtctaaggg tgacccagcg cctagggtga 1560 tacagcctcg taaccctagg tacaatgtgg aacttggaag atatctgcgg catatggagt 1620 ccaagctgat gaaagcggta gatggcgtgt ttggtgaaac gacatgcatt aagggctaca 1680 ccgctgatga ggtggggcag atctttaggg acaagtggga caaatttgat cgtccagtcg 1740 ctattggtct tgatgcctca cggtttgatc aacactgttc ggttgaagcg ttgcaatttg 1800 agcatagctt ctacagggcc atgtaccctg gcaacaagct cttgagcaag ttgctcgaat 1860 ggcaactcca caataagggg aaaggatatg tgcctgatgg cactattacc tatcgtaagg 1920 agggttgtcg catgagtggg gatataaaca catcacttgg taattacctg ttaatgtgtg 1980 ccatgattta tggttatatg cgccatttgg ggatcaatga gtatagtccg gcgaactgtg 2040 gggatgattg cactctcatt gtggaacgca agcatcttaa acggatacaa ggtacactac 2100 ccgagtattt cctaaatctg ggttatacta tgaaggtgga accccctgta tttcaattgg 2160 aggaggttga attctgccag gcacacccag tacagtttga aggtggttgg aagatggtcc 2220 ggaatgtccg taccgctatg agcaaggatg tacactgtgt caacaatatt aaagatctgg 2280 ctacacgcaa ggcgtggagt aatgcacaac accatggtgg catagcactt agtgctggca 2340 tacccgtggt tgagaagttt tactcccggt tcgctttgta tgagatgcca aagaggcacc 2400 aaagaattga cacagtcaca aacgtgcaca agtggcgtgg atcgggtgga aagtatagtg 2460 tgacccctga gtcaagggca agcttttggc aagcctttgg cctgacgggg gatgagcagc 2520 ttgctttaga ggaccgtctg gatagatggg agatggacct atttggagag gagggtgttg 2580 acgctcatga gcccagcatc cttgactccg ccgtagcttg accaagtgaa cacaagcgac 2640 atagcaatgg aaatcgttag gagaaacaat aataatgcaa tcgcgatcaa taagaaacag 2700 ctggcctcta tggcggctac tgccgccgct ggggctctga gcaattatgt gaagaacaat 2760 ggagcaatga ttgtacaagg tgcggtgaat atgggcaaga aagcttatgg agcagtaagg 2820 aatcgtagga ataagggtaa ttcacaggcg atggtgcacg taggtggtat gggcggggct 2880 atgatggccc ctgtggcagt atcccggcaa cttgtgggca gtaagccaaa gttcgcaggt 2940 aggactgctg gatcagtcac agtcacccac cgtgagtact taacccaggt gaacaactcc 3000 cctgctttta caaccaatgg aggtattgtc gggaatttgt tacaactcaa cccgcttaat 3060 ggcacactgt tttcgtggtt accggctatc gcgtcgaact tcgatcagta cgtctttaac 3120 agcgttatgt tgcattatgt ccccctctgt ggcacaaatg aagtagggcg tgttgcaatg 3180 tactgggata aggactctga ggatcctgag cctgtggata gagtggaatt agctaatttc 3240 ggtatactta aagagacggc cccatgggcc gaagctattc tgagggtccc aactgataag 3300 acgaaacgat actgcgatga cagtacagtg gttgacagga agcttatcga cctcggacag 3360 ctcggaatat ctacatatgg agggaccgga actaatcctg tgggggatgt gtttgtgtcg 3420 tatagcgtta cgctttactt cccacaaccc acgaataccc tactcagcac acgacagctt 3480 aaccttactg gcgccctaga agcatctact gggcccggat atattaacgt aacacgtaca 3540 ccaacgctct tgacaataac attcaggtct accggaactt tcctgctttc gggggttttc 3600 cgggatacta gtgttgctgt tcttggtgtg gcggggggca taggaattaa tagtcagacc 3660 acacttgatg ttgttggcgt agccacatca ttccttgtga actgtacagt gtccacacta 3720 cccgctacac tcacatatgg atctgctggg ataacatctg tcactgcgaa ttgcacacgg 3780 gccacaaggg ccaacaccgc aacattgcta tagtcgcctc ggggcctctt gaacagacca 3840 gtttatggat actgaatacg aacaagtcaa taaaccatgg aacgagctat acaaggaagc 3900 gacgctaggg aacaagctta cagtgaacgt tgggatggag gatgtggagg taccattact 3960 cccttcaaac ttcctgacga aagtccgagt ctcattgagt ggaggctaca taacagtgag 4020 gagagtgagg ataaagataa tccccttggt ttcaaggaaa gctggagttt cgggaaagtt 4080 gtatttaaga gatatctcag atacgacggg acggaagctt cattgcacag agctcttgga 4140 tcttgggaaa gagatacggt taacgatgca gcatctagat ttctcggttt cggccagatc 4200 ggatgtacct attgtattcg gtttcgagga tcttgtctca ccatttctgg agggtcgcga 4260 actcttcagc gtctcattga gatggcaatt cggactaagc gcacaatgtt acagcttgcc 4320 ccctgcgaag tggaaggtaa tgtatcaaga ggaagccctg aaggcactga agccttcaaa 4380 gaagaaagcg agtaagacag actcttcacg cttggagtga agtttggtgg cagctataca 4440 ccttagacta ctggttacta ctgtcaggtc ggaacccaca ctaattgagc taggtcgggc 4500 cccgtcgtag gtttggtcac ctacggaatg gggatatgga aaggatctcg taccctgtga 4560 gtcaaacgaa agttgtgctt gggatatggg tctatgccta gtaggttatg tggtatgtct 4620 ctgactttaa ttggatgcca gttttcaaca ggagtggcag cgactgaaca acactttgag 4680 cacggttggt ctcacccttc gggggggcta tagagatcac cggaagcact accggacaac 4740 cggaacattg cagaaatgca gccc 4764 //