Dbfetch
ID AM502338; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC AM502338; XX DT 17-JUN-2007 (Rel. 92, Created) DT 17-JUN-2007 (Rel. 92, Last updated, Version 1) XX DE African cassava mosaic virus DNA-A, clone 27-ug226-2 XX KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; coat protein. XX OS African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Stanley J.; RT ; RL Submitted (16-MAR-2007) to the INSDC. RL Stanley J., Department of Disease and Stress Biology, John Innes Centre, RL Colney Lane, Norwich NR74 7UH, UNITED KINGDOM. XX RN [2] RA Sserubombwe W.S., Briddon R.W., Baguma Y.K., Ssemakula G.N., Bull S., RA Bua A., Otim-Nape G.W., Stanley J.; RT "Diversity of begomoviruses associated with mosaic disease of cultivated RT cassava (Manihot esculenta Cranz) and its wild relative (Manihot glaziovii) RT in Uganda."; RL Unpublished. XX DR MD5; 30b3b471fb29cd8bc240d292fb6d4bb7. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="African cassava mosaic virus" FT /mol_type="genomic DNA" FT /country="Uganda:Kalangala" FT /clone="27-ug226-2" FT /db_xref="taxon:10817" FT CDS 136..477 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A6H318" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A6H318" FT /protein_id="CAM59417.1" FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL FT VSVIRARNYVEATRRYHHFHSRLQGSSKTELRQPIQEPCYCPHCPRHKSKTGLDEQAHV FT QKAHDVQDV" FT CDS 296..1072 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:A6H319" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A6H319" FT /protein_id="CAM59418.1" FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW FT MNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRGDVKHLGICKVISDVTRGPGLTH FT RVGKRLCIKSIYILGKIWMDENIKKQNHTNNVIFYLLRDRRPYGNAPQDFGQIFNMFDN FT EPSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" FT CDS complement(1069..1473) FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:A6H320" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A6H320" FT /protein_id="CAM59419.1" FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDV FT ITVQVRFNHNLRKGLGIHKCFLNFKIWTTLQPQTGLFLRVFRYQVIKYLDNMGVISINN FT VIRAADHVLFNVIAKTIQCQLTHEIKFNVY" FT CDS complement(1214..1621) FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:A6H321" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A6H321" FT /protein_id="CAM59420.1" FT /translation="MQSSSPSQNHSTQVPIKVNHRQFKKRAIRRRRVDLVCGCSYYLHI FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTATIPAEPGRHNSPGSIQSQ FT PEEGAGDSQMFSQLQDLDDLTASDWSFLKGL" FT CDS complement(1530..2606) FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:A6H322" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A6H322" FT /protein_id="CAM59421.1" FT /translation="MRTPRFRIQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIKI FT CRELHQNGEPHLHALIQFDPKITITNNRLFDCVHPSCSTSFHPNIQGAKSSSDVKSYLD FT KDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN FT LNSNLDRIFQEPPAPYVSPFLCSSFDQVPVEIEEWVADNVRDSAARPWRPNSIVIEGDS FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIEDVDPHYLKHFKEFMGSQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPLY FT SGSNQSQSQTIQEASHTA" FT CDS complement(2150..2701) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A6H323" FT /protein_id="CAM59422.1" FT /translation="MPFRDTYIMSPINRRRCSRVSLVECLQLTWSKCELLVLEFKPRMS FT FSHTQSVLYPKNTYCHSFKHSLSHQTLSSLKYVESCIRMGNLTCMPSSNSTPKSRLRTI FT VSSIVYTQAVAPVSTPTFKVPNPAQMSSPIWIRTETPSNGDNFKSMDDLLEAVNNQRMM FT LTPKRLTAAVSQKLLMSFGN" XX SQ Sequence 2781 BP; 745 A; 554 C; 689 G; 793 T; 0 other; accggttggc cccgcccccc tttaaacgtg gtccccgcgc actacgtatg tcggccaatc 60 aggttgtagc gttaaaggtt atgtattagt ggtgggccac tatatacttg caggcgaagt 120 tgtggctagt gcgcaatgtg ggatccactg gtgaatgagt ttccagactc ggtgcatggg 180 ctgaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 240 actttgggcc acgatctggt tagggatcta gtctcagtta tcagggctcg taattatgtc 300 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaagactgaa 360 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 420 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 480 cccagacata cctaggggct gtgaaggccc atgtaaggtt cagtcgtttg agcagagggg 540 tgatgtgaag caccttggta tctgtaaggt gattagtgat gtgactcgtg ggcctgggct 600 gacacacagg gtcggaaaga ggctttgtat caagtccatt tacattcttg gtaagatctg 660 gatggatgaa aatattaaga agcagaatca cactaataac gtgatttttt acctgcttag 720 ggatagaagg ccttatggca atgcgcccca agactttggg cagatattta acatgtttga 780 taacgagcct agtactgcaa caattaagaa cgatttgagg gacaggtttc aggtgttgag 840 gaaatttcat gccactgttg ttggtggtcc atctggcatg aaggagcagg cgttggtgaa 900 aaggttttac aggttgaatc atcacgtgac ttataatcat caggaggcag ggaagtatga 960 gaatcacaca gagaatgctt tgcttctgta catggcatgt actcatgcct ccaatcctgt 1020 atatgcgacg ttgaaaatac gtatatactt ctatgacagt attggcaatt aataaacatt 1080 gaattttatt tcatgagtca actgacactg aatagttttt gcaattacat tgaacaaaac 1140 atgatcagca gctctaatta cattgttaat tgagataaca cccatattat ccaagtattt 1200 aattacttgg tatctaaaga cccttaagaa aagaccagtc tgaggctgta aggtcgtcca 1260 gatcttgaag ttgagaaaac atttgtgaat ccccagcccc ttcctcaggt tgtgattgaa 1320 tcgaacctgg actgttatga cgtcctggtt cagcaggaat ggtcgctgtt ggtgcctggt 1380 tattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg 1440 agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat 1500 atgaacagcc acagacaaga tccactcgtc tacgccgtat ggctcgcttc ttgaattgtc 1560 tgtgattgac tttgattgga acctgagtag agtggttctg tgagggtgat gaagattgca 1620 ttctttaatg cccaggcctt tagcgcctct tgcttttcct cgtctagaaa ctctttatag 1680 gacgaggtag gtcctggatt gcagaggaag atagtgggaa ttccaccttt aatttgaacg 1740 ggtttcccgt atttcgtgtt ggactgccag tccctctggg accccatgaa ttccttaaag 1800 tgcttcaggt agtggggatc gacgtcctca atgacgttgt accaggcagc attattgaag 1860 acctttggac taaggtccag gtgtccacac aggtaattat gtgggcctaa agatcgggcc 1920 catatcgttt tccctgttct gctatcacct tctatgacaa tactattggg tctccatggc 1980 cgcgcagcgg aatctctaac attatcagcg acccattctt caatttcaac aggaacttgg 2040 tcaaaggaag aacataggaa gggagaaaca taaggagctg gtggctcctg gaaaatccta 2100 tctaaattac tatttagatt atgaaattga agtacaaagt cctttgggac taattcccga 2160 atgacattaa gagcttctga cttactgccg ctgttaagcg ctttggcgta agcatcattc 2220 gctgattgtt gaccgcctct agcagatcgt ccatcgattt gaaattgtcc ccattcgacg 2280 gtgtctccgt ccttatccag ataggacttg acatctgagc tggatttggc accttgaatg 2340 ttggggtgga aactggtgct acagcttggg tgtacacaat cgaagagacg attgttcgta 2400 atcgtgattt tggggtcgaa ttggatgagg gcatgcaagt gaggttcccc attctgatgc 2460 agctctctac atattttaat gaacttaggg tttgatggga gagagagtgt ttgaatgaat 2520 gacagtaggt gttctttggg tatagaacac tttgggtatg tgagaaagac attcttggct 2580 tgaattctaa aacgaggagt tcgcattttg accaagtcaa ttggagacac tcaactagag 2640 acactcttga gcatctcctc ctattaattg gagacattat ataggtgtct ctaaatggca 2700 ttattgtaat aagttgaact ttaatttgaa tgaaaaggct caaaaggcgc agaacaccca 2760 aggggccaac cgtataatat t 2781 //