ID AM494935; SV 3; linear; genomic RNA; STD; VRL; 4319 BP. XX AC AM494935; AM494936; XX DT 24-JUN-2008 (Rel. 96, Created) DT 24-JUN-2008 (Rel. 96, Last updated, Version 1) XX DE Grapevine leafroll-associated virus 11 partial HSP70 gene for heat shock DE protein 70, HSP90 gene for heat shock protein 90, cp gene for coat protein DE and partial cpd gene for coat protein duplicate, genomic RNA XX KW coat protein; coat protein duplicate; cp gene; cpd gene; KW heat shock protein 70; heat shock protein 90; HSP70 gene; HSP90 gene. XX OS Grapevine leafroll-associated virus 11 OC Viruses; Riboviria; Closteroviridae; Ampelovirus; unclassified Ampelovirus. XX RN [1] RC revised by author [31-MAR-2008] RP 1-4319 RA Maliogka V.I.; RT ; RL Submitted (26-FEB-2007) to the INSDC. RL Maliogka V.I., School of Agriculture, Aristotle University of Thessaloniki, RL Plant pathology lab, P.O.B. 269, 54124, Thessaloniki, GREECE. XX RN [2] RX DOI; 10.1016/j.virusres.2008.02.015. RX PUBMED; 18403040. RA Maliogka V.I., Dovas C.I., Katis N.I.; RT "Evolutionary relationships of virus species belonging to a distinct RT lineage within the Ampelovirus genus"; RL Virus Res. 135(1):125-135(2008). XX DR MD5; 83197c594ce5690bc647d91e94e7bcc0. DR EuropePMC; PMC2970810; 20703503. XX FH Key Location/Qualifiers FH FT source 1..4319 FT /organism="Grapevine leafroll-associated virus 11" FT /isolate="GLRaV-De1" FT /mol_type="genomic RNA" FT /country="Greece" FT /isolation_source="grapevine" FT /db_xref="taxon:446568" FT CDS <1..1575 FT /gene="HSP70" FT /product="heat shock protein 70" FT /db_xref="GOA:B3KYD9" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:B3KYD9" FT /protein_id="CAM35950.2" FT /translation="TFSTLCFSAGRGVEGCVPESDTIYIPTVVGIRKDGTYTIGLGALL FT EPDVMVYRDIKRYFGMNKFNAETYRNKLKPKFEVIVKDWSAYIGPTSGEKGKARSVIAL FT ACMFVSALAKMAVSMTGNAVTLSVCSVPAEYSSYMRNFIFQGCTLAKIMVQAVVNEPTA FT AGLSAFVNVDKNSMEYMVVYDFGGGTFDASLMAVGSSYVCVVDSLGDNYLGGRDVDNAL FT LDVVVNKLGVSESSLDPFSMEALKIDMVDNPSSVVRRVLTKSGEVKTLNLTSEQFRNLC FT RPFIDRAKAIIERLLVRNEVKSCVAVLIGGSSVLPGVRNSVASLRSVSKVLFDRETYRA FT AVAIGAAIYAQTFAGESRYRLIDCVSNSLSDERLPLRAVTVFPKGHPIPSTVATNFKMP FT TYDTGVVLHEGESSFINENARTFSASLKTAQFPGGKTYVSEFKVSEDGRLDVTMNGALL FT VNKVVPEKPLDAEYSEVFLSSDDKRIKPEVNDIKSFYSKILGEPSLASKDLGSRREVYS FT KHGLVCD" FT CDS 1556..3193 FT /gene="HSP90" FT /product="heat shock protein 90" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:B3KYE0" FT /protein_id="CAO86170.1" FT /translation="MALSATSTYVRVTKTDENFLNLLRTFKGVNDVDSFADEVLNFLNT FT RFSDISGRFSLGDYSCNTWYNGVSGAVGAWPDSEGWGRHLLANFIVSNNVLAHMYYPLA FT SEIKAAVATPTSVFTDKLSRVGKPVTETSKFPYKVSKFDAGKRAEEFGKPTKHTQDLIF FT SIGNYLGRLPTKDEVLGVKSLPIAAVRKGSMLLDVGSDVTLNERKLATLNLRGKNKLGD FT PVEGVFFKIRAKEIEAVAFFMFDENIVADVLNLPGVQWAILSCIKKYPIQADSFEDRID FT GLVYVQAQARKLLEGLIPMRGEVDIDIALSKGTLLKGEVFRGDAKVVAPRFQRNTVGGL FT LMRIGSRFSVKEYSELTRRLVGALLNRNLTLDVTYTQAVLMLLQRYIHYRTNALRFVNL FT PAQLDYLFKSEVKRVDFTGVDEVFSKYQNTIPEIERAWCAPLADVAYMLLKDTGGSFAK FT WKDLQDIPAHMNFDFVGYVDPKLLSANELKFQTQLLDRFRSKDTPIRGFLLGARKGNPI FT DYLVDSAGIGGVEKSMVKRLVGRTGDAL" FT CDS 3250..4059 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:B3KYE1" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:B3KYE1" FT /protein_id="CAO86171.1" FT /translation="MSGTVDPAVPSVPTSSPLPESEADKRAREEKEKRELEEIESLPVV FT QGRTTVGTFEALISSTNGVLDISKVEIPRLFNVTIPGVVSGKHKVLGAKAIWNLGKAKG FT ISESDKHQIQFLMQAFQDFITHSTSPKVSSASNRTITGKYDGKEVTVAHDEIKTALDNS FT IGSFGYENTPRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDCLHVDAR FT LFGYDASLAAELGKMVAINKPSNGSRVTHNLYEDTKVAPDIFLGNRR" FT CDS 4093..>4319 FT /gene="cpd" FT /product="coat protein duplicate" FT /db_xref="GOA:B3KYE2" FT /db_xref="UniProtKB/TrEMBL:B3KYE2" FT /protein_id="CAO86172.1" FT /translation="MEVTLCLSKVKEDIPSTCDELFYLRNAGVFAAVLPTERLSFFYDK FT LSVGNNSDRNKYRELFCFLDNLGNVVATNNG" XX SQ Sequence 4319 BP; 1202 A; 802 C; 1141 G; 1174 T; 0 other; accttttcaa cactatgctt ttctgctggg agaggcgttg aaggttgtgt ccctgagagt 60 gacacaattt acataccaac cgtggtcggt atcagaaaag atggaacgta cacgataggt 120 ctgggagcgt tgttggaacc agacgtgatg gtgtaccgag acatcaagag gtattttggt 180 atgaacaaat tcaatgctga gacttacagg aacaagctga aacctaagtt cgaagtgata 240 gtgaaagatt ggtcagctta cattggacca acttctggag agaaagggaa ggctagaagt 300 gtcatagctt tggcctgtat gttcgtatcg gctttggcaa aaatggcagt ttctatgact 360 gggaatgccg tcactctgtc tgtttgttct gtgccggctg aatacagctc ttatatgaga 420 aatttcatct tccaaggctg tactctggca aagattatgg ttcaggctgt tgtgaacgag 480 ccaactgctg ctgggctgag tgctttcgtc aacgtcgaca agaattcaat ggagtacatg 540 gtagtttacg attttggagg aggcactttc gacgcttcat tgatggccgt tgggtcgtca 600 tacgtatgcg tggtagattc gctcggtgat aattaccttg gaggtagaga cgtcgacaac 660 gcgcttctgg acgtagttgt taacaagttg ggcgtgagtg agagctcatt ggaccccttt 720 tccatggaag cgctaaaaat agatatggtt gataacccat cctctgttgt taggagggta 780 ttgactaagt ctggtgaagt aaagacgttg aacctcacga gtgaacaatt cagaaacctc 840 tgtcgacctt ttatagacag ggcgaaagca ataatcgaga gattgttggt aaggaacgag 900 gtcaaaagct gtgtagctgt actgataggc ggttcttccg tgttaccagg tgtgaggaat 960 tccgtagcta gccttagaag tgtttctaaa gtgctatttg acagagaaac ctacagagca 1020 gcagtggcta tcggagccgc tatttatgct caaacgtttg ctggtgagtc tagatatcga 1080 ctgatagact gtgtttcgaa tagtttatca gatgagagac tgccgctgag ggcagtgact 1140 gtgtttccta aaggtcaccc cataccatcc acagttgcga cgaatttcaa gatgccaact 1200 tacgatacag gtgttgtgct acatgaaggg gaatcgtctt tcataaatga gaacgcaagg 1260 acgttttcgg cgtctctgaa gactgcacag ttcccaggag ggaagactta cgttagtgag 1320 tttaaggtgt ctgaggatgg aagactggat gtaactatga atggcgcact gttggtaaat 1380 aaggtcgtac cggagaaacc tctagacgca gaatactctg aagtgtttct gagttctgat 1440 gataagcgaa tcaaacctga ggttaatgat attaaatcgt tttattccaa gatcttaggt 1500 gaaccatctc ttgcgagtaa agacttgggt tcgagaaggg aagtgtactc caaacatggc 1560 cttgtctgcg actagcacct atgtcagggt gactaagacg gacgaaaatt tcttgaatct 1620 gttaagaacg ttcaaagggg ttaacgacgt tgattcgttc gccgatgaag ttttaaattt 1680 tttaaatact aggttttctg acatctctgg caggttttct ttaggtgatt actcttgcaa 1740 tacctggtat aacggagttt ccggagcagt tggagcttgg ccagattctg aaggttgggg 1800 ccgtcacttg ttggctaact ttatagtttc taataatgtg ctggcacaca tgtactaccc 1860 gctagccagt gagataaagg ctgccgtcgc tactccaacg tctgtgttta cagacaaact 1920 gagtagagtg ggtaagcccg ttaccgagac atcgaagttt ccatacaaag tgtcgaagtt 1980 tgatgctggg aagagagcgg aagagttcgg taagcccaca aaacacactc aagacttaat 2040 attcagcata ggaaactact taggtaggtt accgacaaaa gatgaggtct tgggtgtgaa 2100 atcactgcca atcgctgctg taaggaaagg tagtatgctg ttagacgtcg gttctgacgt 2160 tactttaaat gagcgaaagt tggcaactct gaatttgagg ggtaagaaca agttgggtga 2220 tcctgtcgaa ggagtcttct tcaaaatcag ggcgaaagag atagaggcgg tggctttttt 2280 catgtttgat gaaaatattg ttgccgatgt tttgaatctt ccaggtgtgc agtgggccat 2340 tttgagctgc attaagaagt atcctattca ggcagactca tttgaagaca gaatcgatgg 2400 attggtgtat gtgcaagcac aagcaaggaa gttactggaa ggtttgatac ctatgcgagg 2460 agaagtggat atcgacatag ctctcagcaa aggcacattg ctaaaaggag aggtgttcag 2520 gggcgacgca aaggttgtgg caccccgctt ccaaaggaac actgtcggtg gtctgctaat 2580 gagaataggg tcgaggtttt cagtcaaaga gtattccgag ctgacgcgca gattggtggg 2640 agccttgttg aacaggaacc taacacttga cgtaacttac actcaagcag tactgatgtt 2700 gctccaaagg tacatacatt ataggactaa tgctctgagg tttgtaaatt tgcctgcgca 2760 actggactac ttgttcaaaa gcgaagtgaa gagagtggac tttactgggg tagatgaagt 2820 tttctctaaa tatcaaaaca ctattccgga gatagagagg gcttggtgtg ccccactagc 2880 agacgtagcc tacatgttat tgaaggatac gggcggttca ttcgccaagt ggaaggactt 2940 acaagacatt ccagcacaca tgaattttga tttcgtcggt tacgtcgatc caaaattgtt 3000 gtcggctaac gaattgaagt ttcaaactca gctgctagac aggttcaggt ctaaagacac 3060 tccgattaga ggttttctat tgggcgcgag gaaagggaat cctattgatt accttgttga 3120 ctctgccggt attggcgggg tagagaaaag tatggtaaaa cgattggtgg gtcgaactgg 3180 agatgctctg tgagtattca ttttttatat acttttgttt tattaaagtt tgtatttaag 3240 cttaacagga tgtctggcac cgtagatcca gcagtaccta gtgttcccac atcatcaccg 3300 ctgcctgaga gtgaggctga caagagggcg agagaagaaa aagagaaaag ggaattggag 3360 gagatagaat ctcttcctgt tgttcaaggg aggacgactg taggcacctt cgaagctctg 3420 ataagcagca caaatggtgt gttggacata tcaaaggtgg aaattccgcg cctcttcaat 3480 gtgactatac ccggcgttgt ttcgggtaag cacaaagtac tgggagccaa ggccatctgg 3540 aacctgggga aagcaaaggg aatatctgaa agcgacaaac atcagataca atttctgatg 3600 caagcctttc aagacttcat aacgcactca acatcgccca aagtgtcgag tgcttccaac 3660 agaaccataa ccggaaaata tgacgggaag gaagtcactg tggcccatga cgagataaag 3720 acggccttgg ataattctat aggttccttc ggttatgaga acactccgag gcaatttggg 3780 agagctttca cagccgcgat agtgcaaggg atatcctcag gaaaattgga ggtaaacacg 3840 aagatatgcg cttcacacgg tgtaccaccg aattattacc catactctcc ggactgctta 3900 cacgttgatg ctaggctgtt cggttatgat gcatctctcg cggctgaatt gggtaagatg 3960 gtggcgatta acaaaccgtc caatggaagc agggtcactc acaatctata tgaggacact 4020 aaggtggccc cagacatttt cctgggtaac aggagataag gtcagtgact tcttatattt 4080 tcgtttgaaa atatggaggt tacgctatgc ttgtctaaag tgaaggaaga tattccgtct 4140 acttgtgatg agctatttta tttgcggaac gctggggttt ttgcggcagt tttgccgacc 4200 gagcgtttat ctttctttta tgataaactt agtgtgggga acaatagcga tagaaataaa 4260 taccgggaac tgttctgttt cttggataac ttaggcaatg tagtagctac aaataacgg 4319 //