ID AM491590; SV 1; circular; genomic DNA; STD; VRL; 2732 BP. XX AC AM491590; XX DT 07-JAN-2010 (Rel. 103, Created) DT 10-NOV-2010 (Rel. 106, Last updated, Version 3) XX DE Bitter gourd yellow vein Virus-[Pakistan:Lahore:2004], segment A, complete DE sequence, clone BGAL4(1) XX KW AC4; AV3 protein; C1 gene; C2 gene; C4 gene; coat protein; CP gene; KW pre-coat protein; REn gene; rep protein; replication enhancer protein; KW transcriptional activator protein; V2 gene; V3 gene. XX OS Bitter gourd yellow vein virus-[Pakistan:Lahore:2004] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2732 RA Tahir M.; RT ; RL Submitted (05-FEB-2007) to the INSDC. RL Tahir M., School of Biological Sciences, University of the Punjab, School RL of Biological Sciences, University of the Punjab, Lahore, 54590, PAKISTAN. XX RN [2] RX DOI; 10.1007/s00705-010-0819-5. RX PUBMED; 20924621. RA Tahir M., Haider M.S., Briddon R.W.; RT "Complete nucleotide sequences of a distinct bipartite begomovirus, bitter RT gourd yellow vein virus, infecting Momordica charantia"; RL Arch. Virol. 155(11):1901-1905(2010). XX DR MD5; 504c3a2799aded8cd8e9732bbb874ae4. XX FH Key Location/Qualifiers FH FT source 1..2732 FT /organism="Bitter gourd yellow vein FT virus-[Pakistan:Lahore:2004]" FT /segment="A" FT /host="Momordica charantia" FT /isolate="Pakistan:Lahore:2004" FT /mol_type="genomic DNA" FT /country="Pakistan:Lahore" FT /isolation_source="leaf" FT /collected_by="Muhammad Tahir" FT /collection_date="02-Jul-2004" FT /clone="BGAL4(1)" FT /db_xref="taxon:884611" FT CDS 41..427 FT /gene="V3" FT /product="AV3 protein" FT /db_xref="UniProtKB/TrEMBL:D2N133" FT /protein_id="CAM33233.1" FT /translation="MKFTVHGLFTAWGPINRLAHQVFIHQHVGSIVARISRKRAWSEVH FT ASCKISPRDREELFSRYSRLRSCTRSDSCSPSKELWRSDQQISSFQRPRRRYADVSTST FT APMEPVQLSPLPASQRQRPGQTGR" FT CDS 120..458 FT /gene="V2" FT /product="pre-coat protein" FT /function="movement" FT /db_xref="GOA:D2N134" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2N134" FT /protein_id="CAM33234.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKSYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARVEGTPTSQLRQPLWSPCSCPHCPRHKDKGLDKQADEQ FT KAQNVQNV" FT CDS 280..1050 FT /gene="CP" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:D2N135" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D2N135" FT /protein_id="CAM33235.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKTKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTELTHR FT VGRRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1047..1457) FT /gene="REn" FT /product="replication enhancer protein" FT /function="replication enhancer" FT /db_xref="GOA:D2N136" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2N136" FT /protein_id="CAM33236.1" FT /translation="MMMDSRTGEYITADRAESGVYTWEIQNPLYFKILDHVSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKILTGLRPQTGLFLRVFRTQVLRYLDMLGVIGI FT NNVFRAVYHVLDNVLAQTIERWTSYDIKLDIY" FT CDS complement(1177..1596) FT /gene="C2" FT /product="transcriptional activator protein" FT /function="transcription activation" FT /db_xref="GOA:D2N137" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2N137" FT /protein_id="CAM33237.1" FT /translation="MQSSSHSRNHSIPVAKASLPQKRKKSIRGKRVDLPCGCSYYISIN FT CHDDGFTHRGVHHCGSSREWRIYLGNTKSPVFQDFGPRQQALPNTARHNQDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWAFLESLQNPGP" FT CDS complement(1499..2584) FT /gene="C1" FT /product="rep protein" FT /function="replication" FT /db_xref="GOA:D2N138" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2N138" FT /protein_id="CAM33238.1" FT /translation="MPQPKRFQIFAKNYFLTYPKCSLTKERGTFPIADPRNPNFEEIHK FT GFTGIARKWGTSSTRAHPVRRQFRCQNNRFFDLVSTTRSAHFHPNIQGAKSASDVKAYV FT EKDGDFVDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQYH FT NLVSNLDRIFTPPSEVYVSPFSISSFDRVPPELIDWANVNVVCAAARPFRPISIIIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRESIAPAEEEEEHSREES" FT CDS complement(2301..2426) FT /gene="C4" FT /product="AC4" FT /function="symptoms expression" FT /db_xref="UniProtKB/TrEMBL:D2N139" FT /protein_id="CAM33239.1" FT /translation="MGNLIYTCSSSSKAIQMSKQQILRPGFHNQVSPFPSEHSGS" XX SQ Sequence 2732 BP; 752 A; 587 C; 622 G; 771 T; 0 other; accggatggc cgcgcaaatt tttaggtggg ccctcgacca atgaaattca cggtacatgg 60 gctctttact gcgtggggac caataaatag acttgctcac caagtcttca tccaccaaca 120 tgtgggatcc attgttgcac gaatttccag aaagcgtgca tggtctgagg tgcatgctag 180 ctgtaaaata tctccaagag atagagaaga gctattctcc agatacagtc ggctacgatc 240 ttgtacgaga tctgattctt gttctccgag caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc gtcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagcccgtg cagttgtccc cattgcccgc gtcacaaaga caaaggcctg gacaaacagg 420 ccgatgaaca gaaagcccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtccttt gaatctaggc acgatgtttc gcatattggc 540 aaggtcatgt gtgttagtga tgttacacga ggaactgaac tcacacatcg cgtaggaagg 600 cgattctgtg tgaaatccgt ctatgtgctg gggaagatat ggatggatga aaacatcaag 660 acgaaaaacc atactaacag tgtcatgttt tttttagttc gtgaccgtcg tcctacagga 720 tctccacaag atttcgggga agtgtttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc gaccgtgacg 840 ggaggaacat atgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgtagttt ataatcaaca agaggccggc aagtatgaga atcatacaga aaacgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctattttt atgattcggt aacaaattaa taaatatcca gttttatatc atatgaagtc 1080 catctttcaa tcgtttgtgc caatacatta tccaatacat gataaactgc tctaaataca 1140 ttattaattc ctataacacc tagcatatcc aggtacctaa ggacctgggt tctgaagact 1200 ctcaagaaaa gcccagtctg agggcgtaag cccgtcaaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaaggg cctgctgacg tggtccaaaa tcttgaaata caggggattt 1380 tgtatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ctcccctgtg 1440 cgtgaatcca tcatcatggc agttgatgga tatataatac gaacacccac acggcagatc 1500 aactctcttc ccgcgaatgc tcttcttcct cttctgcggg agcgatgctt tcgcgaccgg 1560 aatagagtgg ttcctcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ttcttcatcc agatattctt tataactgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcct cctttaatca tgaccggctt tccgtatttg gtattgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttataccaa gcatcattgc tatacacctt tgggctcaga tcaagatgtc 1860 cacacaagta attgtgtggt cctaagcaac gagcccacat tgtcttgccc gttctactat 1920 caccctctat gattatgctt atgggtctaa atggccgcgc agcggcacac acaacattta 1980 cattggccca atcgatgagt tctggaggaa ctctgtcgaa ggaagaaatt gaaaatggag 2040 aaacataaac ctcagacgga ggtgtaaaaa tcctatctaa attactaact aaattgtgat 2100 actgtaatac aaaatctttg ggagccttct ctcttaaaat attgagggcc gcagccttgg 2160 accctgaatt gattgcctcg gcatatgcgt cgttggcaga ttggcaacct cctctagctg 2220 atcttccgtc gatctggaaa actccaaaat caacgaagtc tccgtctttc tccacatagg 2280 ctttgacatc tgaagcgctc ttagctccct gaatgttcgg atggaaatgg gctgacctgg 2340 ttgtggaaac caggtcgaag aatctgttgt tttgacatct gaattgcctt cgaactggat 2400 gagcacgtgt agatgaggtt ccccattttc gtgcaattcc cgtgaaaccc ttatgaattt 2460 cttcgaagtt ggggtttcta gggtctgcaa ttgggaaagt gcccctttct ttagtgagag 2520 agcactttgg ataagtgagg aaatagtttt tggcaaatat ttgaaaacgt tttggttgag 2580 gcatgttgac ttggtcaatc ggtactcaac aaacttggct atgcaatcgg tgatcagtac 2640 tcaatatata gttgagtacc gaatggcaga attgtaattt ggaaaacaaa ttacttaatt 2700 aatccgacta aagcggccat ccgtataata tt 2732 //