ID AM491589; SV 1; circular; genomic DNA; STD; VRL; 2686 BP. XX AC AM491589; XX DT 07-JAN-2010 (Rel. 103, Created) DT 15-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Pepper leaf curl Lahore Virus-[Pakistan:Lahore2:2004] segment A, complete DE sequence, clone PeAL2 XX KW AC4 Protein; C1 gene; C4 gene; coat protein; CP gene; pre-coat protein; KW REn gene; rep protein; replication associated protein; KW transcriptional activator protein; TrAP gene; V2 gene. XX OS Pepper leaf curl Lahore Virus-[Pakistan:Lahore2:2004] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2686 RA Tahir M.; RT ; RL Submitted (05-FEB-2007) to the INSDC. RL Tahir M., School of Biological Sciences, University of the Punjab, School RL of Biological Sciences, University of the Punjab, Lahore, 54590, PAKISTAN. XX RN [2] RX DOI; 10.1016/j.virusres.2009.12.007. RX PUBMED; 20079779. RA Tahir M., Haider M.S., Briddon R.W.; RT "Chili leaf curl betasatellite is associated with a distinct recombinant RT begomovirus, Pepper leaf curl Lahore virus, in Capsicum in Pakistan"; RL Virus Res. 149(1):109-114(2010). XX DR MD5; 6b3daef74cc6e62bd3f4c5eb98241baf. XX FH Key Location/Qualifiers FH FT source 1..2686 FT /organism="Pepper leaf curl Lahore FT Virus-[Pakistan:Lahore2:2004]" FT /segment="A" FT /host="Capsicum annuum" FT /isolate="Pakistan/Lahore2/2004" FT /mol_type="genomic DNA" FT /country="Pakistan:Lahore" FT /isolation_source="leaf" FT /collected_by="Muhammad Tahir" FT /collection_date="02-Jul-2004" FT /clone="PeAL2" FT /db_xref="taxon:884613" FT CDS 145..510 FT /gene="V2" FT /product="pre-coat protein" FT /function="movement protein" FT /db_xref="GOA:D2N127" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2N127" FT /protein_id="CAM33227.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEASSRYNHFHARFEGTPPSQLRQPICQPCCCPHCPRHKGKSMGQQAHES FT EAQDVQDVQEPRCSKGV" FT CDS 305..1075 FT /gene="CP" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:D2N128" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D2N128" FT /protein_id="CAM33228.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFRVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1072..1476) FT /gene="REn" FT /product="replication associated protein" FT /function="replication associated" FT /db_xref="GOA:D2N129" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2N129" FT /protein_id="CAM33229.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNRDI FT ITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLLFLNNLAVISINN FT VIRAVDHVLWHVLAQTIHVQSSNIIKFNLY" FT CDS complement(1217..1621) FT /gene="TrAP" FT /product="transcriptional activator protein" FT /function="transcription activation" FT /db_xref="GOA:D2N130" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2N130" FT /protein_id="CAM33230.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSGREWRVYLGDNKSPIFQDNRAPQQAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT CDS complement(1524..2609) FT /gene="C1" FT /product="rep protein" FT /function="Replication" FT /db_xref="GOA:D2N131" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2N131" FT /protein_id="CAM33231.1" FT /translation="MTRTQSFCVNAKNIFLTYPKCPIPKGQMLDILRSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNASQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKSNLDRIFQPPAEVYVSPCCSSSFDQVPTELEEWAAQNVVSAAARPLRPMSIVLEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGPKGTG FT QSNTKYGKPVQIKGGIPATFLCNPGPNSSYKEFLDEEKNSALRNWALKNATFITLEGPL FT YSGSNQSATQASQEGDQASSR" FT CDS complement(2195..2452) FT /gene="C4" FT /product="AC4 Protein" FT /function="symptoms expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2N132" FT /protein_id="CAM33232.1" FT /translation="MGLCISTPSSNSKVNPSSETPDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRP" XX SQ Sequence 2686 BP; 709 A; 561 C; 641 G; 775 T; 0 other; accggatggc cgcgattttt ttaagtgggc cccacaacgc acgtgctgac aaagacatgt 60 ggaccaatta aaaccgcccc tcatatctta attgtttcat ggtcccccct ataaacttgg 120 gctccaagta gtgcactctt accaatgtgg gatccattag taaacgagtt tcctgaaacc 180 gttcacggtt ttaggtgtat gttagcagtt aaatatctgc agctagtaga aaatacatat 240 tccccagaca ctctgggcta cgatttaatt agggatttaa tttcagttat tagggctaga 300 aattatgtcg aagcgtccag cagatataat catttccacg cccgcttcga aggtacgccg 360 ccgtctcaac ttcgacagcc catatgccag ccgtgctgct gcccccattg tccgcgtcac 420 aaaggcaaga gcatgggcca acaggcccat gaatcggaag cccaggatgt acaggatgta 480 caggagccca gatgttccaa gggggtgtga aggcccatgt aaggtccagt cttttgagtc 540 taggcacgat gtagttcata tagggaaggt tatgtgtatt agtgatgtta cccgtggtac 600 tggtttaacc catagagtag gtaagcgttt ccgtgttaag tctgtgtatg tattagggaa 660 gatatggatg gatgagaata tcaagaccaa gaatcacacg aatagtgtga tgttctttct 720 tgtccgtgat cgtcgtcctg ttgataaacc acaagatttt ggagaggtgt tcaacatgtt 780 tgacaacgag cctagcactg caaccgtgaa gaatatgcat agagatcgtt atcaggtctt 840 gaggaaatgg cacgcaacgg ttactggtgg ccagtacgct tcgaaggaac aggcattagt 900 taagaagttc gttagggtta acaattatgt tgtgtataac cagcaggagg ctggaaaata 960 tgaaaatcac acagagaatg ctctgatgtt gtacatggca tgtactcatg cctctaaccc 1020 tgtgtatgcg acgttgaaga tacggatcta tttctatgat tcagtatcga attaataaag 1080 attgaatttt attatatttg aactttgtac atgaattgtt tgtgctaata catgccataa 1140 tacatggtcg acagctctaa ttacattgtt tatactaatt acagctaaat tatttaaaaa 1200 cagcaacact tgggtcctaa atacccttaa gaaatgacca gtctgaggct gtaaggtcgt 1260 ccagattcgg aaggttagaa aacatttgtg tatccccaac gctttcctca ggttgtgatt 1320 gaactgtatc tgcacggtga tgatgtctcg gttcctcagg aatggcctgt tgtggtgctc 1380 ggttatcttg aaatataggg gatttgttat ctcccagata aacacgccat tctctgcctg 1440 agctgcagtg atgggttccc ctgtgcgtga atccatagcc gtggcagcgt aatgcgatga 1500 aatatgaaca gccgcaatct aggtcaacgc gacgacgcct ggtccccttc ttggctagcc 1560 tgtgttgcac tttgattgga acctgagtag agtgggcctt cgagggtgat gaaggtcgca 1620 ttctttaagg cccaatttct tagtgcgcta tttttctctt catccaagaa ctctttatag 1680 ctagaattgg gtcctggatt gcagaggaag gtagcgggaa ttccaccttt aatttgaact 1740 ggctttccgt attttgtgtt ggattgccca gtccctttgg gccccatgaa ctctttaaag 1800 tgctttagat aatgcggatc aacgtcatca atgacgttat accaggcgtc gttattgtag 1860 acctttgggc taaggtcgag atgtccacac aaatagttgt gtggtcccag ggacctggcc 1920 cacattgtct tccccgttct actctcaccc tccaacacta tactcatggg tcttaaaggc 1980 cgcgcagcgg cactgacaac gttctgtgca gcccactcct caagttctgt cggaacttga 2040 tcaaaagaag aagaacaaca aggagaaaca taaacctccg ctggaggttg aaaaatccta 2100 tctaaattag attttaaatt atgatattga aaaataaaat ctttggggag tttctccctt 2160 attattgcta aagctgcttc agccgaaccc gcatttaagg cctctgctgc agcatcatta 2220 gctgtctgtt gacctcctcg agcagatctt ccatcgatct gaaactgacc ccagtcgatg 2280 taatcactgt ccttctcgat gtaggacttg acatcagagc tggacttagc tccctggaag 2340 tttgggtgga attgggaggc gttattaggg tgagtgacat cgaaatgtct ggggtttctg 2400 aacttggatt tacctttgaa ttggatgagg gcgtggatat gcagagaccc atcctggtgt 2460 ttctcttgtg ccactctgat aaatagttta tcagatgggc aatttatcga ccgaagaatg 2520 tcgagcattt gtcctttggg tattgggcat ttggggtaag taaggaagat attttttgca 2580 ttaacacaaa acgactgcgt acgagtcata ttgaattggg gacactcaaa actctgagga 2640 atgggggaca ctggggacgc ttttatatgg tgtccccaaa ttgcaa 2686 //