Dbfetch

Dbfetch

ID   AM411434; SV 1; linear; genomic RNA; STD; VRL; 473 BP.
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AC   AM411434;
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DT   17-NOV-2006 (Rel. 89, Created)
DT   17-NOV-2006 (Rel. 89, Last updated, Version 1)
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DE   Pepper mild mottle virus partial CP gene for capsid protein, genomic RNA,
DE   isolate PMMoV-SaltoBR12
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KW   capsid protein; CP gene.
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OS   Pepper mild mottle virus
OC   Viruses; Riboviria; Virgaviridae; Tobamovirus.
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RN   [1]
RP   1-473
RA   Sakate R.K.;
RT   ;
RL   Submitted (14-NOV-2006) to the INSDC.
RL   Sakate R.K., Producao Vegetal/Defesa Fitossanitaria, Faculdade de Ciencias
RL   Agronomicas-UNESP, Botucatu, Sao Paulo/18610-307, BRAZIL.
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RN   [2]
RA   Cezar M.A.P., KRause-Sakate R., Kobori R.F., Pavan M.A.;
RT   "Occurrence and genetic variability of tobamoviruses infecting Capsicum
RT   spp.";
RL   Unpublished.
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DR   MD5; f4e0304aebcc6e003f15cd46683dbb53.
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FH   Key             Location/Qualifiers
FH
FT   source          1..473
FT                   /organism="Pepper mild mottle virus"
FT                   /host="Capsicum annum"
FT                   /isolate="PMMoV-SaltoBR12"
FT                   /mol_type="genomic RNA"
FT                   /PCR_primers="fwd_name: Tob-Uni1, fwd_seq:
FT                   atttaagtggasggaaaavcact, rev_name: Tob-Uni2, rev_seq:
FT                   gtygttgatgagttcrtgga"
FT                   /db_xref="taxon:12239"
FT   CDS             <1..>473
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:A0PFM4"
FT                   /db_xref="InterPro:IPR001337"
FT                   /db_xref="InterPro:IPR036417"
FT                   /db_xref="UniProtKB/TrEMBL:A0PFM4"
FT                   /protein_id="CAL69732.1"
FT                   /translation="MAYTVSSANQLVYLGSVWADPLELQNLCTSALGNQFQTQQARTTV
FT                   QQQFSDVWKTIPTATVRFPATGFKVFRYNAVLDSLVSALLGAFDTRNRIIEVENPQNPT
FT                   TAETLDATRRVDDATVAIRASISNLMNELVRGTGMYNQALFESASGLTWATTP"
XX
SQ   Sequence 473 BP; 127 A; 100 C; 116 G; 130 T; 0 other;
     atggcttaca cagtttccag tgccaatcaa ttagtgtatt taggttctgt atgggctgat        60
     ccattagagt tacaaaatct gtgtacttcg gcgttaggca atcagtttca aacacaacag       120
     gctagaacta cggttcaaca gcagttctct gatgtgtgga agactattcc gaccgctaca       180
     gttagatttc ctgctactgg tttcaaagtt tttcgatata atgccgtgct agattctcta       240
     gtgtcggcac ttctcggagc ctttgatact aggaacagga taatagaagt tgaaaatccg       300
     caaaatccta caactgccga gacgcttgat gcgacgaggc gggtagatga tgcgacggtg       360
     gccattaggg ccagtataag taacctcatg aatgagttag ttcgtggcac gggaatgtac       420
     aatcaagctc tgttcgagag cgcgagtgga ctcacctggg ctacaactcc tta              473
//