ID   AM410987; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   AM410987;
XX
DT   15-NOV-2006 (Rel. 89, Created)
DT   15-NOV-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Turnip mosaic virus partial gene for polyprotein, isolate U17, genomic RNA
XX
KW   HC-Pro protein; helper component proteinase; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Shi M.L.;
RT   ;
RL   Submitted (09-NOV-2006) to the INSDC.
RL   Shi M.L., Zhejiang University, Institute of Biotechnology, No.268,Kaixuan
RL   Road,Hangzhou, Zhejiang,310029, CHINA.
XX
RN   [2]
RA   Shi M.L., Schubert J.;
RT   "Cloning and sequence analysis of HC-Pro genes of Turnip mosaic virus";
RL   Unpublished.
XX
DR   MD5; 83ba646bb40c1280e21565451c531ed7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Turnip mosaic virus"
FT                   /host="Brassica napus ssp. rapifera"
FT                   /isolate="U17"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1374
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0JKE9"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:A0JKE9"
FT                   /protein_id="CAL69580.1"
FT                   /translation="SAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT                   AMFPCGKITCPDCVTDSELSQGQASGPSMKHRLTQLRDVIKSSYPRFKHAVQILDRYEQ
FT                   SLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATAAGEEFSQATKHLLEIA
FT                   RYLKNRTENIEKGSLKSFRNKVSQKAHINPTLMCDNQLDKNGNFIWGERGYHAKLFFSN
FT                   YFEIIDPKKGYTQYETRVVPNGSAKLAIGKLIVPTNLEVLREQMRGEPVGPYPVPVECV
FT                   SKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT                   EGYCYINIFLAMLVNVKESQAKEFTKVVRGKLVSELGKWPSLLDVATACYFLKVFYPDV
FT                   ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT                   "
FT   mat_peptide     1..1374
FT                   /standard_name="HC-Pro protein"
FT                   /product="helper component proteinase"
XX
SQ   Sequence 1374 BP; 425 A; 294 C; 329 G; 326 T; 0 other;
     agtgcagccg gggccaactt ctggaaaggt ttcgacagat gctttcttgc ataccgcagc        60
     gataatcgag aacacacatg ctactcggga ttggacgtca ctgaatgtgg cgaagttgca       120
     gcactgatgt gcttggccat gtttccttgt ggaaagataa catgccctga ctgcgttaca       180
     gacagcgaac tatcccaagg acaggcgagt ggaccatcca tgaagcacag attgacacag       240
     ttacgtgatg tcattaagtc tagttatcca cgatttaaac acgcagtgca aatactagat       300
     aggtatgaac aatcactaag cagcgcaaat gagaactacc aggatttcgc agaaatccag       360
     agcataagcg atggagtgga aaaagctgca ttcccacatg tcaataagct gaacgctata       420
     ttgatcaaag gagctacagc ggcaggggag gagttctcgc aagcaacgaa gcatttactc       480
     gagattgcac gatacctgaa gaacagaact gagaacatcg agaagggttc gcttaaatcc       540
     ttccgcaaca aggtctccca gaaggcgcat attaacccaa cactaatgtg tgacaaccag       600
     ctcgacaaga atggaaattt catatggggt gaaagaggtt atcacgcaaa gcttttcttt       660
     agcaattact tcgagataat tgatccgaaa aagggctaca ctcagtatga aaccagggtt       720
     gtaccaaatg gatcggccaa gcttgcaatt ggtaaactca tagtccctac gaatcttgaa       780
     gtcctaaggg aacagatgag aggtgagccc gtgggaccgt atccagtacc agttgagtgc       840
     gtgagcaagt cacaaggcga ttttgtccat gcgtgttgct gcgtgacaac agagtcaggt       900
     gatccagtcc tatccgaaat caaaatgcca actaaacatc atctggtgat tggcaacagt       960
     ggtgatccaa agtacattga tctccctgag atcgaggaga acaagatgta catagcgaag      1020
     gaaggttatt gctacatcaa tatcttttta gctatgttgg ttaatgttaa ggagtcacaa      1080
     gcaaaggaat tcacgaaagt tgttcgaggc aaactagtta gtgagcttgg taaatggcct      1140
     tctctactag acgtggcaac tgcctgttat ttcttgaaag ttttctatcc agacgttgct      1200
     aacgctgagc taccacgcat gttagtagat cacaagacaa agataatcca cgttgtcgat      1260
     tcgtacggat cactctcgac tggatatcat gttctcaaga caaacactgt ggaacaactc      1320
     atcaagttca caaggtgcaa cttggagtcg agcttgaaac actaccgtgt cggg            1374
//