ID   AM410986; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   AM410986;
XX
DT   15-NOV-2006 (Rel. 89, Created)
DT   15-NOV-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Turnip mosaic virus partial gene for polyprotein, isolate N23, genomic RNA
XX
KW   HC-Pro protein; helper component proteinase; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Shi M.L.;
RT   ;
RL   Submitted (09-NOV-2006) to the INSDC.
RL   Shi M.L., Zhejiang University, Institute of Biotechnology, No.268,Kaixuan
RL   Road,Hangzhou, Zhejiang,310029, CHINA.
XX
RN   [2]
RA   Shi M.L., Schubert J.;
RT   "Cloning and sequence analysis of HC-Pro genes of Turnip mosaic virus";
RL   Unpublished.
XX
DR   MD5; 8acaf377e71c8a240f4c7b247944e256.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Turnip mosaic virus"
FT                   /host="Raphanus sativus"
FT                   /isolate="N23"
FT                   /mol_type="genomic RNA"
FT                   /country="Nepal"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1374
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0JKE8"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:A0JKE8"
FT                   /protein_id="CAL69579.1"
FT                   /translation="SAAGANFWKGFDRCFLAYRGDNREHTCYTGLDVTECGEVAALMCL
FT                   AMFPCGKITCPDCVTDSELSQGQASGPSIKHKLAQLREVIKSSYPRFKHAVQILDRYEQ
FT                   SLSSANENYQDFAEIQSISDGTDKAAFPHINKLNAILIKGATATGEEFSQATKYLLEIA
FT                   RYLKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNFIWGERGYHAKRFFSN
FT                   YFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMKGEPREPHPVTVECV
FT                   SKLQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPETEENKMYIAK
FT                   EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDV
FT                   ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRCNLESSLKHYRVG
FT                   "
FT   mat_peptide     1..1374
FT                   /standard_name="HC-Pro protein"
FT                   /product="helper component proteinase"
XX
SQ   Sequence 1374 BP; 456 A; 289 C; 316 G; 313 T; 0 other;
     agtgcggcgg gagccaattt ttggaaagga tttgacaggt gtttcctcgc atatcgaggt        60
     gacaaccgtg aacatacatg ttatacggga ttggatgtca ccgagtgtgg agaagtcgca       120
     gcgctaatgt gtttagccat gttcccatgt ggaaaaataa cttgtcctga ctgcgtaaca       180
     gacagcgagt tgtctcaagg gcaggcaagt ggaccatcca taaaacacaa gttagcacaa       240
     ctacgtgagg ttatcaagtc cagttatcca cggttcaaac atgcagtgca aatactcgac       300
     agatatgagc agtcattgag cagtgcaaat gagaactacc aggacttcgc agaaattcaa       360
     agcataagtg atggaacaga caaagcagcg tttccgcaca ttaacaaact aaatgcaata       420
     ctaattaagg gagcaacagc aactggagag gaattctcgc aagcaacgaa gtacttgctt       480
     gagatagccc ggtatctgaa gaatagaacc gagaatattg aaaagggttc gcttaaatcc       540
     ttccgcaata agatctctca aaaggcgcac ataaacccaa cactgatgtg tgacaatcag       600
     ctcgacaaga acggcaattt catatggggc gagagaggtt atcacgcgaa gaggttcttt       660
     agtaactact tcgagataat cgatccaaag aaaggctaca ctcaatacga gacgagaata       720
     gtgccaaatg ggtcacgaaa gctcgcaatt ggcaaactca tagttccaac gaacttcgaa       780
     gtcctgaggg agcagatgaa aggcgaaccc agagaaccac atccagtcac agttgagtgc       840
     gtaagcaagc tacagggcga cttcgttcat gcgtgctgtt gtgttacaac agagtcgggc       900
     gatccagtct tatctgaaat taaaatgcca actaagcacc acctggtaat tggtaatagc       960
     ggcgacccaa agtacatcga tctccctgaa actgaggaaa acaagatgta catagcgaaa      1020
     gaaggttatt gctacattaa tatcttctta gctatgctag ttaatgttaa agagtcacaa      1080
     gcaaaagaat ttacaaaagt agtcagagac aaactggttg gagaacttgg caaatggccc      1140
     actttgttgg atgtagcgac tgcttgttac ttcctaaaag tgttttaccc tgacgtcgcc      1200
     aacgctgaat tgccacgcat gctagtggat cacaaaacaa agattatcca cgtagtcgac      1260
     tcgtatggat cactgtcaac aggataccac atcctcaaga caaacaccgt agagcaactt      1320
     atcaaattca ctaggtgcaa tttagaatca agtttgaagc actatcgtgt tgga            1374
//