ID   AM410985; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   AM410985;
XX
DT   15-NOV-2006 (Rel. 89, Created)
DT   15-NOV-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Turnip mosaic virus partial gene for polyprotein, isolate H1, genomic RNA
XX
KW   HC-Pro protein; helper component proteinase; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Shi M.L.;
RT   ;
RL   Submitted (09-NOV-2006) to the INSDC.
RL   Shi M.L., Zhejiang University, Institute of Biotechnology, No.268,Kaixuan
RL   Road,Hangzhou, Zhejiang,310029, CHINA.
XX
RN   [2]
RA   Shi M.L., Schubert J.;
RT   "Cloning and sequence analysis of HC-Pro genes of Turnip mosaic virus";
RL   Unpublished.
XX
DR   MD5; 0c727ca80183c8af0a99af150e64d44b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Turnip mosaic virus"
FT                   /host="Alliaria petiolata"
FT                   /isolate="H1"
FT                   /mol_type="genomic RNA"
FT                   /country="Hungary"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1374
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0JKE7"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:A0JKE7"
FT                   /protein_id="CAL69578.1"
FT                   /translation="SAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT                   AMFPCGKITCPDCVTDSELSQGQASGPSMKHRLAQLRDVIKSSYPRFKHAVQILDRYEQ
FT                   SLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIA
FT                   RYLKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDRNGNFIWGERGYHAKRFFSN
FT                   YFEIIDPKKGYTQYGTRAVPNGSRKLAIGKLIVPTNFEVLREQMKGEPVEPYPVTVECV
FT                   SKLQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT                   EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDV
FT                   ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT                   "
FT   mat_peptide     1..1374
FT                   /standard_name="HC-Pro protein"
FT                   /product="helper component proteinase"
XX
SQ   Sequence 1374 BP; 446 A; 302 C; 326 G; 300 T; 0 other;
     agtgcagcag gagccaactt ctggaaaggc ttcgacagat gctttctcgc ataccgtagt        60
     gacaatcgcg agcatacatg ctattcaggg ttagatgtca ctgagtgcgg cgaggtggca       120
     gcactgatgt gtttggctat gttcccatgc ggaaagataa cctgccctga ctgtgtaaca       180
     gatagtgagc tatcccaagg acaagcaagc ggaccatcta tgaagcacag gttggcacag       240
     ctacgcgatg tcatcaagtc aagctaccca cgcttcaagc atgcagtgca gatactagat       300
     aggtatgagc aatcactgag cagtgcaaac gagaactacc aagatttcgc agaaatccag       360
     agcataagcg atggagttga aaaagctgca ttcccacacg tcaacaagct aaacgcaata       420
     ttgatcaaag gggccacagc aacaggagag gaattctcgc aggctacgaa gcacttgctc       480
     gagatagcac gatacctgaa gaacagaacc gagaacattg agaagggttc actgaagtcc       540
     tttcgcaaca agatttccca gaaagcgcac atcaacccaa cactaatgtg tgacaaccag       600
     ctcgatagaa atggaaattt catatggggt gagagaggat accatgcaaa acgattcttc       660
     agcaactact ttgaaataat cgatccaaag aaaggctaca cccaatacgg gacaagagcg       720
     gtaccaaatg ggtcacggaa acttgcaatc ggcaaactaa tagtcccaac gaacttcgaa       780
     gttttaaggg aacagatgaa aggcgaaccg gtagaaccat acccagtaac agtcgagtgt       840
     gtgagcaagt tacagggtga cttcgtccat gcatgttgtt gtgtcacaac agaatcaggc       900
     gacccagtct tgtctgagat caaaatgcca accaaacacc atctagtgat tggtaacagc       960
     ggtgatccaa agtacataga tctccctgag atcgaggaga ataaaatgta catagcgaaa      1020
     gaaggttatt gttacatcaa tatcttccta gccatgttgg taaatgtcaa ggagtcgcag      1080
     gcaaaggagt tcacgaaagt tgttagggac aaactagttg gcgaacttgg caagtggccc      1140
     actctgttag atgtagcaac cgcttgttat ttcctgaaag tattttaccc agacgttgct      1200
     aacgccgaat tgccacgcat gctagtggac cataagacaa agataattca tgtcgttgat      1260
     tcatatgggt cactgtcaac tggatatcat gtccttaaga caaacactgt ggaacaactc      1320
     atcaaattca cgagatgtaa tttggagtca agcttgaaac actaccgcgt tgga            1374
//