ID   AM410978; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   AM410978;
XX
DT   15-NOV-2006 (Rel. 89, Created)
DT   15-NOV-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Turnip mosaic virus partial gene for polyprotein, isolate G30, genomic RNA
XX
KW   HC-Pro protein; helper component proteinase; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Shi M.L.;
RT   ;
RL   Submitted (09-NOV-2006) to the INSDC.
RL   Shi M.L., Zhejiang University, Institute of Biotechnology, No.268,Kaixuan
RL   Road,Hangzhou, Zhejiang,310029, CHINA.
XX
RN   [2]
RA   Shi M.L., Schubert J.;
RT   "Cloning and sequence analysis of HC-Pro genes of Turnip mosaic virus";
RL   Unpublished.
XX
DR   MD5; 3b505ea9cb980cb0a52ce191c588f7e2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Turnip mosaic virus"
FT                   /host="Brassica rapa ssp. pekinensis"
FT                   /isolate="G30"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1374
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0JKE0"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:A0JKE0"
FT                   /protein_id="CAL69571.1"
FT                   /translation="SAAGANFWKGFDRCFLAYRGDNREHTCYTGLDVTECGEVAALMCL
FT                   AMFPCGKITCPDCVTDSELSQGQATAPSIKHKLSQLREVIKSSYPRFKHAVQILDRYEH
FT                   SLSSANENYQDFAEIQSISDGTDKAAFPHINKLNAILIKGATATGEEFSQATKYLLEIA
FT                   RYLKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNFIWGERGYHAKRFFSN
FT                   YSEIIDPKKSYAQYETRIVPNGSRRLAIGKLIVPTNFELLREQMRGEPIEPCPVTVECV
FT                   SKLQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT                   EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYLLKVFYPDV
FT                   ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRCNLESSLKHYRVG
FT                   "
FT   mat_peptide     1..1374
FT                   /standard_name="HC-Pro protein"
FT                   /product="helper component proteinase"
XX
SQ   Sequence 1374 BP; 416 A; 305 C; 341 G; 312 T; 0 other;
     agtgcagcag gtgccaactt ttggaaaggc tttgacaggt gtttccttgc atatcgcggt        60
     gacaaccgtg aacacacgtg ttacacggga ctcgacgtca ctgagtgtgg agaggttgca       120
     gcgctaatgt gcctcgctat gttcccatgt gggaagataa cttgtcccga ctgcgtgacg       180
     gatagtgagt tgtctcaagg acaggctact gcaccgtcca taaagcataa actgtcacaa       240
     ctgcgcgaag tcatcaaatc gagttaccca cgatttaaac acgcagtgca aatactagac       300
     aggtatgaac attcactcag tagtgctaat gagaactacc aggatttcgc ggagatccag       360
     agcataagcg atggtacaga caaagctgcg ttcccacaca tcaacaagct caatgcgata       420
     ttgattaagg gagcaactgc gacgggagaa gagttctcgc aagcaacgaa gtacctgctt       480
     gagattgcac ggtacttgaa gaacagaacc gagaatattg agaaaggctc gcttaagtct       540
     ttcagaaata agatctcgca gaaagcgcat atcaacccaa cactgatgtg cgacaaccag       600
     ctcgataaga atggcaattt catatggggc gagagaggct atcatgcaaa gcgtttcttt       660
     agcaattact ccgagataat cgatccgaag aaaagttacg ctcaatacga gacgaggata       720
     gtgccaaacg gatcacgaag gcttgcaatc ggtaagctca tagtcccgac gaactttgag       780
     ttgttgcgcg agcagatgag aggcgagccc atagaaccgt gtccagtgac agtcgaatgc       840
     gtgagtaaat tgcaaggcga ctttgttcat gcatgttgct gcgtaacaac cgaatcaggc       900
     gatccagtcc tttctgaaat caagatgcca accaagcacc atttggttat tggaaacagc       960
     ggcgacccga agtacattga ccttcctgag attgaggaga ataaaatgta tatagcaaag      1020
     gaaggttatt gttacattaa tatcttccta gctatgttag tgaatgtcaa ggagtcgcaa      1080
     gcgaaggagt tcacgaaagt ggttagagac aaacttgtcg gagaactcgg caaatggcct      1140
     acgctgttag atgtggcaac cgcttgctac ttgctgaaag tgttctaccc agacgttgcc      1200
     aatgctgagc taccgcgcat gctagtggac cacaagacga aaataatcca cgtcgttgac      1260
     tcatacggat cattgtccac ggggtaccat atcctcaaga caaacaccgt agaacaactc      1320
     atcaagttca ctaggtgcaa cttggaatcg agtttgaaac actaccgtgt tggt            1374
//