ID   AM410977; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   AM410977;
XX
DT   15-NOV-2006 (Rel. 89, Created)
DT   15-NOV-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Turnip mosaic virus partial gene for polyprotein, isolate G27, genomic RNA
XX
KW   HC-Pro protein; helper component proteinase; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Shi M.L.;
RT   ;
RL   Submitted (09-NOV-2006) to the INSDC.
RL   Shi M.L., Zhejiang University, Institute of Biotechnology, No.268,Kaixuan
RL   Road,Hangzhou, Zhejiang,310029, CHINA.
XX
RN   [2]
RA   Shi M.L., Schubert J.;
RT   "Cloning and sequence analysis of HC-Pro genes of Turnip mosaic virus";
RL   Unpublished.
XX
DR   MD5; 82ee8cd3035c01e8ea41610a1943f765.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Turnip mosaic virus"
FT                   /host="Brassica napus ssp. napus"
FT                   /isolate="G27"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1374
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0JKD9"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:A0JKD9"
FT                   /protein_id="CAL69570.1"
FT                   /translation="SAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT                   AMFPCGKITCPDCVTDSELSQGQASGPSMKHRLTQLRDVIKSSYPRFKHAVQILDRYEQ
FT                   SLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIA
FT                   RYLKNRTENIEKGSLKSFRNKVSQKAHINPTLMCDNQLDKNGNFIWGERGYHAKRFFSN
FT                   YFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMRGEPVEPYPVTVECV
FT                   SKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT                   EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVSELGKWPSLLDVATACYFLKVFYPDV
FT                   ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT                   "
FT   mat_peptide     1..1374
FT                   /standard_name="HC-Pro protein"
FT                   /product="helper component proteinase"
XX
SQ   Sequence 1374 BP; 433 A; 293 C; 327 G; 321 T; 0 other;
     agtgcagctg gagccaactt ctggaaaggt ttcgacagat gctttcttgc ataccgcagc        60
     gataatcgag agcacacatg ctactcgggc ttagacgtca ctgaatgtgg cgaagttgca       120
     gcactgatgt gtttggccat gtttccatgt ggaaagataa catgccctga ctgcgttaca       180
     gacagcgaac tatcccaagg acaggcgagt ggaccatcca tgaagcacag gttgacacag       240
     ttacgtgatg tcattaaatc tagttatcca cggttcaaac atgcagtgca aatactagat       300
     aggtatgaac aatcactgag cagtgcaaat gaaaactacc aggatttcgc agaaatccag       360
     agcataagcg atggagtgga aaaagctgca ttcccacacg tcaataagct gaacgcaata       420
     ttgatcaaag gagctacagc gacaggggag gagttctcac aagccacgaa gcatttactc       480
     gagatagcac gatacctgaa aaacagaact gagaacatcg agaagggttc gcttaagtcc       540
     ttccgcaaca aggtttccca gaaggcgcac attaacccaa cactaatgtg tgacaaccag       600
     ctcgacaaga acggaaattt catatggggt gagagaggtt atcacgcaaa gcgcttcttc       660
     agcaattact tcgagataat tgatccgaag aagggttaca ctcagtacga aacaagaata       720
     gtacccaatg gatcgcgaaa gcttgcaatt ggtaaactca tagtccctac gaattttgaa       780
     gtcctaaggg aacagatgag aggtgaaccc gtggaaccgt atccagttac agtggagtgc       840
     gtgagcaagt cacaaggtga ttttgtccat gcatgttgct gtgtgacaac agagtcaggt       900
     gatccagtcc tatctgaaat caaaatgcca accaaacatc atttggtaat tggcaacagt       960
     ggtgatccaa agtacattga tctccctgag atcgaagaga acaagatgta catagcgaag      1020
     gaaggttatt gctacatcaa tatcttctta gctatgttgg ttaatgttaa ggagtcgcaa      1080
     gcaaaggaat tcacgaaagt tgttcgagac aaactagtta gcgaacttgg taaatggccc      1140
     tctctactag acgtggcgac tgcctgttat ttcttgaaag tgttctatcc agacgttgct      1200
     aacgctgagc taccacgcat gttagtggac cacaagacaa agataatcca cgtcgttgat      1260
     tcgtatgggt cactctcgac tggatatcat gttcttaaga caaacactgt ggaacaactc      1320
     atcaagttta caaggtgcaa cttggagtcg agcttgaaac actaccgcgt cggg            1374
//