ID   AM410972; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   AM410972;
XX
DT   15-NOV-2006 (Rel. 89, Created)
DT   15-NOV-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Turnip mosaic virus partial gene for polyprotein, isolate D22, genomic RNA
XX
KW   HC-Pro protein; helper component proteinase; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Shi M.L.;
RT   ;
RL   Submitted (09-NOV-2006) to the INSDC.
RL   Shi M.L., Zhejiang University, Institute of Biotechnology, No.268,Kaixuan
RL   Road,Hangzhou, Zhejiang,310029, CHINA.
XX
RN   [2]
RA   Shi M.L., Schubert J.;
RT   "Cloning and sequence analysis of HC-Pro genes of Turnip mosaic virus";
RL   Unpublished.
XX
DR   MD5; 77c9426a728411e7cca96c693dbafe9d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Turnip mosaic virus"
FT                   /host="Brassica napus ssp. napobrassica"
FT                   /isolate="D22"
FT                   /mol_type="genomic RNA"
FT                   /country="Denmark"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1374
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0JKD4"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:A0JKD4"
FT                   /protein_id="CAL69565.1"
FT                   /translation="SAAGDDFWKGFDRCFRAYRSDNREHTCYSGLDVTECGEVAALMCL
FT                   AMFPCGKITCPDCVTDSELSQGQASGPSIKHRLTQSREIIKSSYPRFKHAVQILDRYEQ
FT                   SLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIA
FT                   RYLKNRTENIEKGSLKSFRNKVSQKAHINPTLMCDNQLDKNGNFIWGERGYHAKRFFSN
FT                   YFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMRGEPVEPYPVTVECV
FT                   SKSQGDFVHACCCVTTESGDPVLSEINMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT                   EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVSELGKWPSLLDVATACYFLKVFYPDV
FT                   ANAELPRMLVDHKTKTIHVVDSYGSLSTGYHILKTNTVEQLIKFTRCNLESSLKHYRVG
FT                   "
FT   mat_peptide     1..1374
FT                   /standard_name="HC-Pro protein"
FT                   /product="helper component proteinase"
XX
SQ   Sequence 1374 BP; 430 A; 300 C; 329 G; 315 T; 0 other;
     agtgcagctg gggacgactt ctggaaaggt tttgacagat gctttcgtgc atatcgcagc        60
     gataatcgag aacacacatg ctactcgggc ttagacgtca ctgaatgtgg cgaagtcgca       120
     gcactgatgt gtttggccat gtttccatgt ggaaagataa catgtcctga ctgcgttaca       180
     gacagcgaac tgtcccaagg acaggcgagt ggaccatcca taaagcacag gctgacacag       240
     tcacgtgaga tcattaagtc tagttatcca cggttcaaac atgcagtgca aatactagat       300
     aggtatgaac aatcactgag cagtgcaaat gaaaactacc aggatttcgc agaaatccag       360
     agcataagcg atggagtgga aaaagctgca ttcccacacg tcaataagct gaatgcaata       420
     ttgatcaaag gagctacagc gacaggggag gagttctcgc aagccacgaa gcatttactc       480
     gagatagcac gatacctgaa gaacagaact gagaacatcg agaagggttc gcttaagtcc       540
     ttccgcaaca aggtttccca aaaggcgcac attaacccaa cactaatgtg tgacaaccag       600
     cttgacaaga acggaaattt catatggggt gagagaggtt atcacgcaaa gcgcttcttc       660
     agcaactact ttgagataat tgatccgaaa aagggttaca ctcagtatga aaccagaata       720
     gtaccaaatg gatcgcgaaa gcttgcaatt ggtaaactca tagtccccac gaattttgaa       780
     gtcctaaggg aacagatgag aggtgaaccc gtggaaccat atccagtcac agttgaatgc       840
     gtgagtaagt cacaaggcga ttttgtccat gcatgttgct gcgtgacaac agagtcaggt       900
     gatccagtcc tatccgaaat taacatgcca accaaacatc atctggtgat tggtaacagc       960
     ggtgatccaa aatacattga tctccccgag atcgaggaga acaagatgta catagcgaag      1020
     gaaggttatt gctacatcaa tatcttctta gctatgttgg ttaatgttaa ggagtcgcaa      1080
     gcaaaggaat tcacgaaagt tgttcgtgac aaactagtta gcgaacttgg taaatggccc      1140
     tctctactag acgtggcgac tgcctgttat ttcttgaaag tgttctatcc agacgtcgct      1200
     aatgctgagc tgccacgcat gttagtggac cacaagacaa agacaatcca cgtcgttgac      1260
     tcgtatggct cgctgtcaac tgggtatcac attctcaaga ctaacaccgt ggagcagctc      1320
     atcaagttca cgagatgtaa cttggaatca agcctgaaac attaccgcgt cggg            1374
//