ID   AM410971; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   AM410971;
XX
DT   15-NOV-2006 (Rel. 89, Created)
DT   15-NOV-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Turnip mosaic virus partial gene for polyprotein, isolate A28, genomic RNA
XX
KW   HC-Pro protein; helper component proteinase; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Shi M.L.;
RT   ;
RL   Submitted (09-NOV-2006) to the INSDC.
RL   Shi M.L., Zhejiang University, Institute of Biotechnology, No.268,Kaixuan
RL   Road,Hangzhou, Zhejiang,310029, CHINA.
XX
RN   [2]
RA   Shi M.L., Schubert J.;
RT   "Cloning and sequence analysis of HC-Pro genes of Turnip mosaic virus";
RL   Unpublished.
XX
DR   MD5; 1dfd94ab59f1c956b4dbf6a9a32df5d7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Turnip mosaic virus"
FT                   /host="Brassica oleracea var. capitata"
FT                   /isolate="A28"
FT                   /mol_type="genomic RNA"
FT                   /country="Austria"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1374
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0JKD3"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:A0JKD3"
FT                   /protein_id="CAL69564.1"
FT                   /translation="SAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT                   AMFPCGKITCPDCVTDSELSQGQASGPSMKHRLTQLRDVIKSSYPRFKHAVQILDRYEQ
FT                   SLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIA
FT                   RYLKNRTENIEKGSLKSFRNKVSQKAHINPTLMCDNQLDKNGNFIWGERGYHAKRFFSN
FT                   YFEIIDPKKGYTQYETRIVPNGSRNVAIGKLIVPTNFEVLREQMRGEPVEPYPVTVECV
FT                   SKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT                   EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVSELGKWPSLLDVATACYFLKVFYPDV
FT                   ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT                   "
FT   mat_peptide     1..1374
FT                   /standard_name="HC-Pro protein"
FT                   /product="helper component proteinase"
XX
SQ   Sequence 1374 BP; 437 A; 289 C; 324 G; 324 T; 0 other;
     agtgcagctg gggccaactt ctggaaaggt ttcgatagat gctttcttgc ataccgcagc        60
     gataatcgag aacacacatg ctactcggga ttagacgtca ctgaatgtgg cgaagttgca       120
     gcactgatgt gtttggccat gtttccatgc ggaaagataa catgccctga ctgcgttaca       180
     gacagcgaat tatcccaagg acaggcgagt ggaccatcca tgaagcacag gttgacacag       240
     ttacgtgatg tcattaagtc tagttatcca cggttcaaac atgcagtgca aatactagat       300
     aggtatgaac aatcactgag cagtgcaaat gaaaattacc aggatttcgc agaaatccag       360
     agcataagtg atggagtgga aaaagctgca ttcccacacg tcaataagct gaacgcaata       420
     ttgatcaaag gagctacagc gacaggggag gagttctcac aagctacgaa gcatttactc       480
     gagatagcac gatacctgaa gaacagaact gagaacatcg agaagggttc gcttaagtcc       540
     ttccgcaaca aggtttccca gaaagcgcac attaacccaa cactaatgtg tgacaaccag       600
     ctcgacaaga acggaaattt catatggggt gagagaggtt atcacgcaaa acgcttcttc       660
     agcaattact tcgagataat tgatccgaaa aagggttaca ctcagtatga gacgagaata       720
     gtaccaaatg gatcgcgaaa cgttgcaatt ggtaaactca tagtccctac gaactttgaa       780
     gtcttaaggg aacaaatgag aggtgaaccc gtagaaccgt atccagtcac agttgagtgt       840
     gtgagcaagt cacaaggcga ttttgtccat gcatgttgct gcgtgacaac agagtcaggt       900
     gatccagtcc tatccgaaat taaaatgcca accaaacacc atctggtgat tggcaacagc       960
     ggtgatccaa agtacattga tctccctgag atcgaagaga acaagatgta catagcgaag      1020
     gaaggctatt gttacatcaa catcttctta gccatgttgg ttaatgttaa ggagtcgcaa      1080
     gcaaaggaat ttacgaaagt tgttcgagat aaactagtta gcgaacttgg taaatggccc      1140
     tccctactag acgtggcgac tgcttgttat ttcttgaaag tgttctatcc agacgttgct      1200
     aacgctgagc taccacgcat gttagtggac cacaaaacaa agataatcca cgttgttgat      1260
     tcgtatgggt cactctcaac tggatatcat gttcttaaga caaacactgt ggaacaactc      1320
     atcaagttta caaggtgcaa cttggagtcg agcttgaaac actaccgcgt tggg            1374
//