ID AM409201; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC AM409201; XX DT 08-JAN-2007 (Rel. 90, Created) DT 07-AUG-2007 (Rel. 92, Last updated, Version 2) XX DE Tomato Yellow Leaf Curl Virus complete genome, strain TYLCV, isolate RE4 XX KW c1 gene; c2 gene; C2 protein; c3 gene; C3 protein; c4 gene; C4 protein; KW capsid; cp gene; MP; replication associated protein; v2 gene. XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Lefeuvre P.; RT ; RL Submitted (30-OCT-2006) to the INSDC. RL Lefeuvre P., Amis, Cirad - Umr Pvbmt, 7 chemin de l'IRAT, Ligne Paradis, RL Saint Pierre, 97410, REUNION. XX RN [2] RX DOI; 10.1111/j.1365-3059.2004.01154.x. RX AGRICOLA; IND43697951. RA Delatte H., Holota H., Naze F., Peterschmitt M., Reynaud B., Lett J.M.; RT "The presence of both recombinant and nonrecombinant strains of Tomato RT yellow leaf curl virus on tomato in Reunion Island"; RL Plant Pathol. 54(2):262-262(2005). XX RN [3] RX DOI; 10.1016/j.jviromet.2007.03.020. RX PUBMED; 17485124. RA Lefeuvre P., Hoareau M., Delatte H., Reynaud B., Lett J.M.; RT "A multiplex PCR method discriminating between the TYLCV and TYLCV-Mld RT clades of tomato yellow leaf curl virus"; RL J. Virol. Methods 144(1-2):165-168(2007). XX DR MD5; 2a66ebe93906772ac4c78edbbe6fa6f0. DR EuropePMC; PMC2224568; 17977971. DR EuropePMC; PMC3953851; 24598426. DR EuropePMC; PMC4531504; 26260162. DR EuropePMC; PMC4667217; 26625871. DR EuropePMC; PMC5904752; 29530481. DR EuropePMC; PMC6164481; 30177671. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /strain="TYLCV" FT /isolate="RE4" FT /mol_type="genomic DNA" FT /country="Reunion:Saint-Gilles les Hauts" FT /collection_date="2004" FT /db_xref="taxon:10832" FT CDS 148..498 FT /gene="v2" FT /product="MP" FT /db_xref="GOA:A1KQQ6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A1KQQ6" FT /protein_id="CAL64775.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARFEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT CDS 308..1084 FT /gene="cp" FT /product="capsid" FT /db_xref="GOA:Q6PMS6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6PMS6" FT /protein_id="CAL64776.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1081..1485) FT /gene="c3" FT /product="C3 protein" FT /db_xref="GOA:A1KQQ8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A1KQQ8" FT /protein_id="CAL64777.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGHFLRVFRYEVLKYVDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT CDS complement(1226..1633) FT /gene="c2" FT /product="C2 protein" FT /db_xref="GOA:A1KQQ9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A1KQQ9" FT /protein_id="CAL64778.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1542..2615) FT /gene="c1" FT /product="replication associated protein" FT /db_xref="GOA:A1KQR0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A1KQR0" FT /protein_id="CAL64779.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGNKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT CDS complement(2171..2464) FT /gene="c4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A1KQR1" FT /protein_id="CAL64780.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTDQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAINPRPSIY" XX SQ Sequence 2781 BP; 760 A; 534 C; 604 G; 883 T; 0 other; accggatggc cgcgcctttt ccttttatgt ggtccccacg agggttccac agacgtcact 60 gtcaaccaat caaattgcat actcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgttt cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gatgatatta agcacactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 ctttttggtc cgtgatagaa ggccctatgg aagcagccca atggattttg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gtgataggtt 840 tcaagtgatg agaaaatttc atgcaacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtac gagaaccata ctgaaaacgc cttattattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatacaat acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagact 1200 atctacatac ttaagaactt catatctaaa tactcttaag aaatgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggccgctg 1380 gctgtgttct gttatcttga aatagagggg attgtttatc tcccaaataa aaacgccatt 1440 ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag cgcccaattt ttcaaggata tatttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 ttattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcaattac aatacttatg 1980 ggtctccatg gccgcgcagc ggaagacacg acgttctcag cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttctctt ttaatatatt gagggcctcg gatttattgc ctgaattgag tgcttcggca 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgccatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgttcggatg gaaatgtgct gatctgtttg gggataccag gtcgaagaac 2400 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggagttctct gcaaactttg atgtattttt tatttgttgg ggtttctagg 2520 ttttttaatt gggaaagtgc ttcctcttta gagagagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaatcgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tatttatacc tggacaccta atggctattt 2700 ggtaatttcg taaaagtaca ttgcaattca aaatttaaaa ttcaaaaatc taatcattaa 2760 agcggccatc cgtataatat t 2781 //