ID AM296025; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC AM296025; XX DT 19-JUN-2007 (Rel. 92, Created) DT 25-JAN-2008 (Rel. 94, Last updated, Version 3) XX DE Oat dwarf virus complete genome, isolate SxA25 XX KW C1-1 gene; Coat protein; complete genome; rep gene; RepA; Replicase; KW V1 gene; V2 gene. XX OS Oat dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2740 RA Schubert J.; RT ; RL Submitted (04-AUG-2006) to the INSDC. RL Schubert J., Institute of Resistance Research, Federal Centre for Breeding RL Research, Theodor-Roemer-Weg 4, Aschersleben, D-06449, GERMANY. XX RN [2] RX DOI; 10.1016/j.virusres.2007.03.018. RX PUBMED; 17449126. RA Schubert J., Habekuss A., Kazmaier K., Jeske H.; RT "Surveying cereal-infecting geminiviruses in Germany--diagnostics and RT direct sequencing using rolling circle amplification"; RL Virus Res. 127(1):61-70(2007). XX DR MD5; e4d70ad126c00212ce7092835de910cb. DR GrainGenes; AM296025; AM296025. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Oat dwarf virus" FT /host="Avena sativa" FT /isolate="SxA25" FT /mol_type="genomic DNA" FT /country="Germany:Saxony-Anhalt" FT /isolation_source="Avena sativa" FT /collected_by="Antje Habekuss" FT /collection_date="2006" FT /note="possibly new virus of genus Mastrevirus" FT /db_xref="taxon:497863" FT misc_feature join(2524..2740,1..184) FT /function="long intergenic region" FT /note="bi-directional promoter" FT CDS 185..436 FT /gene="V1" FT /product="hypothetical protein" FT /function="transport protein" FT /db_xref="GOA:A6GVJ4" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A6GVJ4" FT /protein_id="CAL30138.1" FT /translation="MEISQYTPPLPYRDQLYTAPVSTESSDLAWRTFVFVIFGCLVAVG FT IIYLAYTLFLKDCILVWKAKRQKKTEEIGYGNTPARPQ" FT CDS 433..1206 FT /gene="V2" FT /product="Coat protein" FT /db_xref="GOA:A6GVJ5" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A6GVJ5" FT /protein_id="CAL30139.1" FT /translation="MTDLKSKGKRKRDEGESSGRWKGAVYKRRKTQYKVVPVRPPALCV FT LRQQWITPDKQSVVVTNTPRIDLITCFAAGKGDDNRHTNQTIMYKFHLQGSVYVADASS FT KFVTPLRLYHWLVYDAEPKQAMPGIEDIFTMPWNVLPSTWTIWRAWAHRFVVKRKWHVD FT LVSDGKKVGSSTADTRYNYVVGKNIVDCNKFIKGLRVSTEWMNTGDGKIGDIKKGALYL FT VTCTRAGVTGDSASTGFSVVCNLTHACYFKSIGLQ" FT misc_feature 1207..1376 FT /gene="short intergenic region" FT CDS complement(join(1377..1791,1887..2524)) FT /gene="rep" FT /product="Replicase" FT /function="replication complex" FT /db_xref="GOA:A6GVJ6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A6GVJ6" FT /protein_id="CAL30140.1" FT /translation="MATVASSSTRFRVYSKYLFLTYPQCILEPQYALDSLRSLLQKYKP FT LYICSVRERHEDNSPHLHVLVQCEKRASITNPNALNLRMDLSPFTTYHPNIQPANNCND FT VREYITKEVDSHEHTAEWGTFIHHTTSGRPDKDEAMKQIIESATSKEEFISMVRSRFPF FT EWSINLQRFQYTANYLFPDPIPQYTPEFPTESLICHETIQNWANTELFTVRHRSLYICG FT PTRTGKTSWARSLGIHNYYNSQVDFTNYNADALYNIIDDIPIKYVPNWKCFLGAQKDFT FT VNPKYGKKKTIRGGIPCIVLVNPDEDWLKDMTPLQSDYLYANAEIHYMEDGETFINHSF FT TFGEGATASQ" FT mRNA complement(join(1377..1791,1887..2524)) FT /gene="rep" FT exon complement(1377..1791) FT /gene="rep" FT /number=2 FT CDS complement(1724..2524) FT /gene="C1-1" FT /product="RepA" FT /function="replication complex" FT /db_xref="GOA:A6GVJ7" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A6GVJ7" FT /protein_id="CAL30141.1" FT /translation="MATVASSSTRFRVYSKYLFLTYPQCILEPQYALDSLRSLLQKYKP FT LYICSVRERHEDNSPHLHVLVQCEKRASITNPNALNLRMDLSPFTTYHPNIQPANNCND FT VREYITKEVDSHEHTAEWGTFIHHTTSGRPDKDEAMKQIIESATSKEEFISMVRSRFPF FT EWSINLQRFQYTANYLFPDPIPQYTPEFPTESLICHETIQNWANTELFTVSLDSYILCN FT SIPSDQALSNLRWMDDYTRNHQDAIDPSTFADLLEQERLPGQDL" FT intron complement(1792..1886) FT /gene="rep" FT /number=1 FT exon complement(1887..2524) FT /gene="rep" FT /number=1 XX SQ Sequence 2740 BP; 695 A; 575 C; 731 G; 739 T; 0 other; accctccgtg gccccccccg aggcccacgt ggcttttcgt acgtgggccg aggccgctag 60 tgcgcggtcc cggataagat gctgattgtg tcactgtcac acttattgtg attgtgtgca 120 atctgcacca aatggaatct gtgataactt agactataag taaggatgat tgcgaagcat 180 atggatggag atttcccagt ataccccgcc tctaccatat agagatcagc tgtatactgc 240 tcccgtctct acggagtctt ctgacttagc ctggcgaacc tttgtgttcg tgatatttgg 300 ttgcttagtt gctgtaggca tcatttatct ggcttatact cttttcctga aggactgcat 360 tcttgtctgg aaggctaaga gacagaagaa gacggaggag attggatacg ggaatacccc 420 ggcgcgtcct caatgactga tttaaagtct aaggggaagc gtaagcggga tgagggggag 480 tcatctggaa gatggaaggg agccgtatac aagaggcgta agacccagta caaggttgta 540 cctgtcaggc caccggctct ctgtgttctc cgtcagcagt ggattactcc ggacaagcag 600 agtgtggttg ttaccaacac tccgaggatt gatcttatta catgctttgc agctgggaag 660 ggcgatgata atcgccatac taaccagacc atcatgtaca agtttcacct gcaggggagt 720 gtgtacgtgg cggatgcttc ctccaagttc gtaactccgt tgaggttgta tcactggctc 780 gtctatgacg ccgagcctaa acaggccatg cctggtattg aagacatctt cacgatgcct 840 tggaatgtcc tgccatccac atggaccatc tggagagcct gggctcaccg gttcgtagtg 900 aagaggaagt ggcacgtaga cctcgtctca gacggcaaga aggttgggtc gtccaccgct 960 gatacgcggt ataactacgt agtagggaag aacatagtcg actgcaataa gttcatcaag 1020 ggtctccgtg tatccacgga atggatgaac acgggtgatg gcaagattgg tgacattaag 1080 aagggagcgc tgtatctagt tacatgtact agggctggag tcactggtga ctctgcatcc 1140 actggtttca gtgtggtctg taacttgaca catgcgtgtt atttcaagtc cattggactg 1200 caataaatat atatatatat ttctggttac aatcttatta catcggctca gctatgagca 1260 aagacaaacc aaattatcac aaacataaaa cacaccttac acaaatatat cacaacgaaa 1320 tacaacaccc tgagatatta tgtttataat gatgtacgcc gtccgcgcta ggacagtcac 1380 tgcgaagcag tggccccttc accgaaggtg aaggaatggt tgataaatgt ctcaccatct 1440 tccatatagt ggatctcggc gttggcgtac aaatagtccg actgcagggg agtcatgtcc 1500 ttcagccagt cttcatcagg gtttactaaa acgatacatg gtatgccacc cctgattgtc 1560 ttcttcttgc catacttggg gttgactgtg aaatccttct gagcaccgag gaagcatttc 1620 cagtttggca catatttaat agggatgtca tctattatat tgtataatgc atcagcatta 1680 tagttcgtga aatctacttg gctgttgtag tagttgtgga tccctagaga tcttgcccag 1740 gaagtctttc ctgttctagt aggtccgcaa atgtagaggg atctatggcg tcctggtgat 1800 tcctagtata gtcatccatc cacctgaggt tagatagagc ttggtccgaa ggaatgctat 1860 tacaaaggat gtaagaatct agacttacag tgaacagttc ggtgttggcc cagttttgaa 1920 tggtctcatg acatatcaga gattccgttg gaaactctgg tgtatactgg gggatgggat 1980 caggaaatag atagttagca gtatactgga agcgttgtag gttgatagac cattcaaacg 2040 ggaacctaga tctgaccata ctgatgaact cctccttgga ggtagcagac tcgatgatct 2100 gcttcatcgc ttcgtcctta tcaggacgac cagaagttgt gtggtggatg aatgttcccc 2160 actcagcagt atgttcatga gaatcaacct ccttggtgat gtactcacga acatcgttgc 2220 agttgttggc aggttggatg ttgggatgat atgtggtgaa tggagataag tccatccgta 2280 ggttcaaggc attgggattg gtgattgaag ctctcttctc acactgcacg agtacgtgca 2340 gatgtggtga attgtcttca tgtcgctctc tgacggagca gatatacagt ggtttatact 2400 tctggaggag agagcgaaga gaatccaagg cgtactgtgg ctcaaggatg cattgtggat 2460 atgtaaggaa taaatatttg gagtagacgc gaaacctggt ggagctggaa gcaacggtag 2520 ccatggctaa cacagaagtc cgctaggtcc ttagcagaaa tcaggggtgt cccagaaaac 2580 tctatgctta ccctccgtgt gccggtgtgc aggattcaca tcgttttgtg aatgtgtgag 2640 tagcctattt ataggcggga gttcagtgcg ggatgttagt taggccgaag gcccactaac 2700 gggtgtgcgg gttcggggga ggccacggag gtctaatatt 2740 //