ID AM296018; SV 1; circular; genomic DNA; STD; ENV; 2734 BP. XX AC AM296018; XX DT 19-JUN-2007 (Rel. 92, Created) DT 04-APR-2013 (Rel. 116, Last updated, Version 4) XX DE Wheat dwarf virus complete genome, isolate SxA18 XX KW C1-1 gene; Coat protein; complete genome; rep gene; RepA; Replicase; KW V1 gene; V2 gene. XX OS Wheat dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2734 RA Schubert J.; RT ; RL Submitted (04-AUG-2006) to the INSDC. RL Schubert J., Institute of Resistance Research, Federal Centre for Breeding RL Research, Theodor-Roemer-Weg 4, Aschersleben, D-06449, GERMANY. XX RN [2] RX DOI; 10.1016/j.virusres.2007.03.018. RX PUBMED; 17449126. RA Schubert J., Habekuss A., Kazmaier K., Jeske H.; RT "Surveying cereal-infecting geminiviruses in Germany--diagnostics and RT direct sequencing using rolling circle amplification"; RL Virus Res. 127(1):61-70(2007). XX DR MD5; 1910d2f58fa9b81e57935edd1cee2d3c. DR GrainGenes; AM296018; AM296018. XX FH Key Location/Qualifiers FH FT source 1..2734 FT /organism="Wheat dwarf virus" FT /environmental_sample FT /isolate="SxA18" FT /mol_type="genomic DNA" FT /country="Germany:Saxony-Anhalt" FT /isolation_source="Avena sativa" FT /collected_by="Antje Habekuss" FT /collection_date="2003" FT /db_xref="taxon:10834" FT misc_feature join(2500..2734,1..171) FT /function="long intergenic region" FT /note="bi-directional promoter" FT CDS 172..444 FT /gene="V1" FT /product="hypothetical protein" FT /function="transport protein" FT /db_xref="GOA:A6GVG3" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A6GVG3" FT /protein_id="CAL30107.1" FT /translation="MDQVFTPPRSIRADQYQAPYDPGSSDYAWLTFVFVSFGLLISVGV FT VWLAYTLFLKDCILVWKAKKQRRTEEIGYGNTPARPNGDQQGLPR" FT CDS 416..1198 FT /gene="V2" FT /product="Coat protein" FT /db_xref="GOA:A6GVG4" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A6GVG4" FT /protein_id="CAL30108.1" FT /translation="MVTNKDSRGKGKRKLEEGESSGRWKGQVYKRRKQTYKVVPVRPPA FT LCVYRYNWLNSDKTNIVVGNTPRIDLITCFAAGKADNNRHTNQTILYKFNLQGTCYVSD FT SSCMFITPIRVYHWLVYDAEPKQATPDSTDIFTMPWNLLPSSWTVQRAWSHRFVVKRKW FT CVNLVSDGRKVGSKTVDSRYNYVVGKNIVDASKFVKGLRVTTEWMNTGDGKIGDIKKGA FT LYLVTCTRGGITGDSASISFEVVCAYTHACYFKSIGIQ" FT misc_feature 1199..1369 FT /gene="short intergenic region" FT CDS complement(join(1370..1784,1871..2499)) FT /gene="rep" FT /product="Replicase" FT /function="replication complex" FT /db_xref="GOA:A6GVG5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A6GVG5" FT /protein_id="CAL30109.1" FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR FT DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW FT SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNEHLYSESPGRHKSIYIC FT GPTRTGKTSWARSLGIHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF FT TVNPKYGKRKMIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVIHYMYEGESFFAFG FT ENVTASQ" FT mRNA complement(join(1370..1784,1871..2499)) FT /gene="rep" FT exon complement(1370..1784) FT /gene="rep" FT /number=2 FT CDS complement(1705..2499) FT /gene="C1-1" FT /product="RepA" FT /function="replication complex" FT /db_xref="GOA:A6GVG6" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A6GVG6" FT /protein_id="CAL30110.1" FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR FT DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW FT SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNEHLYSVSLESYILCTST FT PADKAVTDLEWMDDYSRSHRDGISPSTSAVRQEQERLPGQDL" FT intron complement(1785..1870) FT /gene="rep" FT /number=1 FT exon complement(1871..2499) FT /gene="rep" FT /number=1 XX SQ Sequence 2734 BP; 692 A; 599 C; 742 G; 701 T; 0 other; accctgcgtg gtgggtcccg aggcgcactc ggcttttcgt gagtgcgccg aggcttttgg 60 accacgtctt tatgtcatca catcaattat tgttggtgag tcatcacata ttccacctgc 120 aattatgtgc catcgcttag cttataagga agtgtcgggg aaggtttctc gatggatcag 180 gtctttacac cgccgcgttc tatacgggca gatcaatacc aggcccctta cgatcccgga 240 tcctccgact acgcctggct gacctttgtg ttcgtctcct tcggtttgtt aatatccgta 300 ggagttgttt ggttggctta cactctgttc ttgaaggact gcatattagt gtggaaggcg 360 aagaagcaga ggaggaccga ggaaattggt tacggtaata caccggccag accaaatggt 420 gaccaacaag gactcccgag gtaagggaaa gaggaagctc gaggagggcg aatcgagtgg 480 aaggtggaag gggcaagtgt ataagcggcg taagcagacc tacaaggtag tacctgtgag 540 gccacccgcc ctgtgtgtgt accggtataa ctggctcaat tcagacaaga ccaatatcgt 600 ggtgggtaac acccctcgga ttgatctgat tacctgcttt gcagcgggca aggccgataa 660 taatcggcat acaaatcaga ccatcctcta caagtttaac ctacagggga cctgttacgt 720 gtcggactcc tcatgtatgt tcataacccc aatcagggtt tatcactggt tggtctatga 780 tgcagagccg aagcaggcta cgcctgactc cactgacatt tttacgatgc cttggaatct 840 gctgccgagt tcatggactg tgcagagggc ttggtcgcat cggttcgtgg tgaagaggaa 900 gtggtgcgtg aacctggtct ccgatggaag gaaggttgga tccaagacgg tggactcccg 960 ctacaactac gtagtgggga agaatatcgt tgacgcctcc aagttcgtga agggtttgcg 1020 cgtgacgacg gagtggatga acacgggtga cggcaagata ggcgatatta agaagggtgc 1080 cctgtatcta gtaacctgta ctcgtggagg tatcactgga gacagtgcct ccatttcatt 1140 cgaagttgta tgtgcctata cgcacgcgtg ttacttcaaa tccattggga ttcaataaat 1200 aaaatagtat tttattcatc tcatgtcatt cgattacaga tgctcggcta cgagcaaaga 1260 taaaccaaac tatgacatac aacacactca taaccaaaac atcgaaaaaa gaaatacaag 1320 gggcgagatc acacaatttt agaaaccgta gccgtccgcg ctaggacagt cactgcgaag 1380 cagtgacatt ttcgccgaag gcgaagaatg attcaccctc atacatataa tgtatcacag 1440 cgttagagta catgtaatcc gactgttcag gagtcatatc cttgagccaa tcttcgtctg 1500 ggttaactaa aatgatgcaa ggtataccac cccgtatcat ttttcgcttc ccgtacttag 1560 gattgacggt gaagtcacgc tgagccccga cgaagcactt ccagtttggc gtgaacttga 1620 atggaatgtc gtcaattatg ttgtacttgg cgttgacgtc ataggtcgtg aaatctacta 1680 ggctgttgta gtagttgtgg atccctagag atcttgccca ggaagtcttt cctgttcttg 1740 tcggaccgca gatgtagatg gacttatgcc gtcccggtga ctcctggaat aatcgtccat 1800 ccactctaaa tcagttacgg ccttatccgc aggagttgaa gtacaaagga tgtatgattc 1860 gaggcttacg gagtagagat gttcattttt ccagctttca atggtctcat gacacatgag 1920 ggactcgatg ggaaactcag gtgtgtaagt gctaactggg tctgggaata gatggcgtgc 1980 agtgtattcg aagtctttca gacggataga ccattcaaac ggaaaacgat ggcagaccat 2040 gctgagaaat tcctctctcg aggtactcga ctcaatgatc tgtttcatat ccgcgtctcg 2100 gtctttacga cccggagtgg taactgctac gaatgttccc cactcagccg tgttgacatc 2160 ggagtcaacc tccttcatga tgtaatcacg aacttggttg cagtctttgg cagcttgaat 2220 gttaggatga aaaaatgaaa atggtgatgt gttcatacca atgttgagag cattgggatt 2280 ggtgatggaa gcacgaagct tgttttgcac gagtacgtgc agatgtggtg atccatcttc 2340 gtggagttcc ctaactgcag ctatgtacag aggttcatat ttggccaaga gagtgcgaag 2400 agagtccaag gcgtactgtg gctctaggat gcattgagga tatgttagga agaggtattt 2460 ggaatagaca cggaacctgg gtgcagatga agaggccata gtagcaagca gaagcccggc 2520 aggtccttag cgaaaaaacg gggtgtgctc gcgaactcta ctctctaccc tgcgtgggag 2580 tgtgcagaat tcacaccgat gggctcggtg tccacggttt aaatattgca ggtttaggtg 2640 ggaacgcggg accctgtctt ttcggcgcga aagcgacggg tggtcccgcg tgtggtttgt 2700 ggctcgggga cccgccacgc aggaatctaa tatt 2734 //